RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 IGLV7-43P04211 117 aa9.76□□□□□ -0.85
HOXD3-201ENST00000249440 IGLV7-46A0A075B6I9 117 aa9.75□□□□□ -0.85
HOXD3-201ENST00000249440 MRPL34Q9BQ48 92 aaKnown RBP9.75□□□□□ -0.85
HOXD3-201ENST00000249440 DNAH6Q9C0G6 4158 aa9.73□□□□□ -0.85
HOXD3-201ENST00000249440 PSPHP1O15172 72 aa9.73□□□□□ -0.85
HOXD3-201ENST00000249440 LY6G6CO95867 125 aa9.72□□□□□ -0.85
HOXD3-201ENST00000249440 PCOTHQ58A44 107 aa9.71□□□□□ -0.86
HOXD3-201ENST00000249440 RYR2Q92736 4967 aa9.69□□□□□ -0.86
HOXD3-201ENST00000249440 FAT2Q9NYQ8 4349 aa9.69□□□□□ -0.86
HOXD3-201ENST00000249440 A0A087X002 238 aa9.68□□□□□ -0.86
HOXD3-201ENST00000249440 NOTCH2NLQ7Z3S9 236 aa9.68□□□□□ -0.86
HOXD3-201ENST00000249440 DNAH11Q96DT5 4516 aa9.68□□□□□ -0.86
HOXD3-201ENST00000249440 CIRBP-AS1Q8TBR5 109 aa9.68□□□□□ -0.86
HOXD3-201ENST00000249440 RYR3Q15413 4870 aa9.68□□□□□ -0.86
HOXD3-201ENST00000249440 CD164Q04900 197 aa9.67□□□□□ -0.86
HOXD3-201ENST00000249440 C1orf195Q5TG92 126 aa9.67□□□□□ -0.86
HOXD3-201ENST00000249440 SPINK6Q6UWN8 80 aa9.67□□□□□ -0.86
HOXD3-201ENST00000249440 COA5Q86WW8 74 aa9.66□□□□□ -0.86
HOXD3-201ENST00000249440 Q8N9P0 234 aaPredicted RBP9.66□□□□□ -0.86
HOXD3-201ENST00000249440 LIMD2Q9BT23 127 aa9.66□□□□□ -0.86
HOXD3-201ENST00000249440 A8MUN3 132 aa9.66□□□□□ -0.86
HOXD3-201ENST00000249440 SSBP3-AS1Q7Z2R9 100 aa9.66□□□□□ -0.86
HOXD3-201ENST00000249440 DNAH5Q8TE73 4624 aa9.63□□□□□ -0.87
HOXD3-201ENST00000249440 SEC61GP60059 68 aa9.61□□□□□ -0.87
HOXD3-201ENST00000249440 PKD1P98161 4303 aa9.6□□□□□ -0.87
HOXD3-201ENST00000249440 Q5VV11 94 aa9.6□□□□□ -0.87
HOXD3-201ENST00000249440 LOC101927531A0A1B0GV80 90 aa9.59□□□□□ -0.87
HOXD3-201ENST00000249440 KRTAP10-2P60368 255 aa9.59□□□□□ -0.87
HOXD3-201ENST00000249440 C8orf87E5RJ46 101 aa9.57□□□□□ -0.88
HOXD3-201ENST00000249440 PKHD1P08F94 4074 aa9.57□□□□□ -0.88
HOXD3-201ENST00000249440 PRR15LQ9BU68 103 aa9.56□□□□□ -0.88
HOXD3-201ENST00000249440 Q5W150 140 aa9.55□□□□□ -0.88
HOXD3-201ENST00000249440 KRTAP13-3Q3SY46 172 aa9.53□□□□□ -0.88
HOXD3-201ENST00000249440 CHKB-CPT1BH3BT56 60 aa9.53□□□□□ -0.88
HOXD3-201ENST00000249440 HRES1P13985 223 aa9.51□□□□□ -0.89
HOXD3-201ENST00000249440 Q6ZSA8 131 aa9.51□□□□□ -0.89
HOXD3-201ENST00000249440 LINC00313P59037 77 aa9.5□□□□□ -0.89
HOXD3-201ENST00000249440 KRTAP13-2Q52LG2 175 aa9.49□□□□□ -0.89
HOXD3-201ENST00000249440 Q75L30 129 aa9.48□□□□□ -0.89
HOXD3-201ENST00000249440 KRTAP10-1P60331 282 aa9.47□□□□□ -0.89
HOXD3-201ENST00000249440 SPAG11AQ6PDA7 123 aa9.47□□□□□ -0.89
HOXD3-201ENST00000249440 LINC01558Q9Y6Z2 57 aa9.46□□□□□ -0.9
HOXD3-201ENST00000249440 LRP1BQ9NZR2 4599 aa9.45□□□□□ -0.9
HOXD3-201ENST00000249440 FAM229AH3BQW9 127 aa9.44□□□□□ -0.9
HOXD3-201ENST00000249440 DYNC1H1Q14204 4646 aaKnown RBP9.41□□□□□ -0.9
HOXD3-201ENST00000249440 A6NED7 52 aa9.4□□□□□ -0.9
HOXD3-201ENST00000249440 ACYP2P14621 99 aa9.4□□□□□ -0.9
HOXD3-201ENST00000249440 A8MU10 97 aa9.4□□□□□ -0.9
HOXD3-201ENST00000249440 KRTAP1-4P0C5Y4 121 aa9.39□□□□□ -0.91
HOXD3-201ENST00000249440 VPS13BQ7Z7G8 4022 aa9.35□□□□□ -0.91
HOXD3-201ENST00000249440 KRTAP16-1A8MUX0 517 aa9.34□□□□□ -0.91
HOXD3-201ENST00000249440 LCA10Q71F78 164 aa9.34□□□□□ -0.91
HOXD3-201ENST00000249440 PRR26Q8N8Z3 221 aa9.34□□□□□ -0.91
HOXD3-201ENST00000249440 DMAC1Q96GE9 116 aa9.34□□□□□ -0.91
HOXD3-201ENST00000249440 RETNLBQ9BQ08 111 aa9.34□□□□□ -0.91
HOXD3-201ENST00000249440 IGKV2-30P06310 120 aa9.34□□□□□ -0.91
HOXD3-201ENST00000249440 PMAIP1Q13794 54 aa9.34□□□□□ -0.91
HOXD3-201ENST00000249440 PLA2G1BP04054 148 aaKnown RBP9.33□□□□□ -0.92
HOXD3-201ENST00000249440 EPPK1P58107 5090 aaKnown RBP9.32□□□□□ -0.92
HOXD3-201ENST00000249440 CDC42SE1Q9NRR8 79 aa9.31□□□□□ -0.92
HOXD3-201ENST00000249440 ATP11AUNQ6ZP68 121 aa9.31□□□□□ -0.92
HOXD3-201ENST00000249440 TYMSOSQ8TAI1 123 aa9.31□□□□□ -0.92
HOXD3-201ENST00000249440 SPINK1P00995 79 aa9.29□□□□□ -0.92
HOXD3-201ENST00000249440 SPTSSBQ8NFR3 76 aa9.28□□□□□ -0.92
HOXD3-201ENST00000249440 APOBP04114 4563 aaKnown RBP9.28□□□□□ -0.92
HOXD3-201ENST00000249440 SPINK7P58062 85 aa9.24□□□□□ -0.93
HOXD3-201ENST00000249440 J3QL48 77 aa9.23□□□□□ -0.93
HOXD3-201ENST00000249440 FAT1Q14517 4588 aa9.23□□□□□ -0.93
HOXD3-201ENST00000249440 A0A1B0GVY2 172 aa9.22□□□□□ -0.93
HOXD3-201ENST00000249440 IGKV2D-30A0A075B6S6 120 aa9.21□□□□□ -0.93
HOXD3-201ENST00000249440 RPS29P62273 56 aaKnown RBP9.17□□□□□ -0.94
HOXD3-201ENST00000249440 LINC00304Q8N9R0 145 aa9.17□□□□□ -0.94
HOXD3-201ENST00000249440 A0A1B0GU69 56 aa9.14□□□□□ -0.95
HOXD3-201ENST00000249440 C7orf65Q6ZTY9 151 aa9.13□□□□□ -0.95
HOXD3-201ENST00000249440 A6NN06 94 aa9.13□□□□□ -0.95
HOXD3-201ENST00000249440 KIAA1109Q2LD37 5005 aa9.12□□□□□ -0.95
HOXD3-201ENST00000249440 KTN1-AS1Q86SY8 53 aa9.11□□□□□ -0.95
HOXD3-201ENST00000249440 HSPG2P98160 4391 aa9.1□□□□□ -0.95
HOXD3-201ENST00000249440 RYR1P21817 5038 aa9.06□□□□□ -0.96
HOXD3-201ENST00000249440 SMR3BP02814 79 aaPredicted RBP9.06□□□□□ -0.96
HOXD3-201ENST00000249440 KRTAP17-1Q9BYP8 105 aa9.02□□□□□ -0.97
HOXD3-201ENST00000249440 UQCR11O14957 56 aa8.98□□□□□ -0.97
HOXD3-201ENST00000249440 SPATA8Q6RVD6 105 aa8.98□□□□□ -0.97
HOXD3-201ENST00000249440 Q8N1X5 172 aa8.97□□□□□ -0.97
HOXD3-201ENST00000249440 C20orf166-AS1Q96NR2 134 aa8.96□□□□□ -0.97
HOXD3-201ENST00000249440 C9orf92A6NGG3 77 aa8.96□□□□□ -0.98
HOXD3-201ENST00000249440 A8MUU9 505 aa8.95□□□□□ -0.98
HOXD3-201ENST00000249440 PKHD1L1Q86WI1 4243 aa8.94□□□□□ -0.98
HOXD3-201ENST00000249440 KRTAP10-4P60372 401 aaPredicted RBP8.94□□□□□ -0.98
HOXD3-201ENST00000249440 MIR22HGQ0VDD5 57 aa8.94□□□□□ -0.98
HOXD3-201ENST00000249440 KRTAP3-3Q9BYR6 98 aa8.93□□□□□ -0.98
HOXD3-201ENST00000249440 KRTAP3-2Q9BYR7 98 aa8.93□□□□□ -0.98
HOXD3-201ENST00000249440 RBM12B-AS1Q9P1G2 102 aa8.92□□□□□ -0.98
HOXD3-201ENST00000249440 LRP1Q07954 4544 aaKnown RBP8.89□□□□□ -0.99
HOXD3-201ENST00000249440 BIRC6Q9NR09 4857 aa8.85□□□□□ -0.99
HOXD3-201ENST00000249440 MYCBP2O75592 4640 aa8.84□□□□□ -0.99
HOXD3-201ENST00000249440 LCE2DQ5TA82 110 aaPredicted RBP8.79□□□□□ -1
HOXD3-201ENST00000249440 KRTAP3-1Q9BYR8 98 aa8.78□□□□□ -1
HOXD3-201ENST00000249440 FLG2Q5D862 2391 aaPredicted RBP8.76□□□□□ -1.01
HOXD3-201ENST00000249440 ABCA13Q86UQ4 5058 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms