RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SPINK6Q6UWN8 80 aa11.08□□□□□ -0.64
CPSF3-201ENST00000238112 CIRBP-AS1Q8TBR5 109 aa11.06□□□□□ -0.64
CPSF3-201ENST00000238112 DNAH8Q96JB1 4490 aa11.05□□□□□ -0.64
CPSF3-201ENST00000238112 KMT2AQ03164 3969 aa11.05□□□□□ -0.64
CPSF3-201ENST00000238112 PRR15LQ9BU68 103 aa11.05□□□□□ -0.64
CPSF3-201ENST00000238112 DNAH17Q9UFH2 4485 aa11.03□□□□□ -0.64
CPSF3-201ENST00000238112 DNAH2Q9P225 4427 aa11.02□□□□□ -0.64
CPSF3-201ENST00000238112 CHKB-CPT1BH3BT56 60 aa11.02□□□□□ -0.64
CPSF3-201ENST00000238112 LY6G6CO95867 125 aa10.98□□□□□ -0.65
CPSF3-201ENST00000238112 LOC101927531A0A1B0GV80 90 aa10.98□□□□□ -0.65
CPSF3-201ENST00000238112 SSBP3-AS1Q7Z2R9 100 aa10.97□□□□□ -0.65
CPSF3-201ENST00000238112 FBN3Q75N90 2809 aa10.97□□□□□ -0.65
CPSF3-201ENST00000238112 MEGF8Q7Z7M0 2845 aa10.94□□□□□ -0.66
CPSF3-201ENST00000238112 TGP01266 2768 aa10.94□□□□□ -0.66
CPSF3-201ENST00000238112 Q75L30 129 aa10.93□□□□□ -0.66
CPSF3-201ENST00000238112 C8orf87E5RJ46 101 aa10.93□□□□□ -0.66
CPSF3-201ENST00000238112 HRES1P13985 223 aa10.93□□□□□ -0.66
CPSF3-201ENST00000238112 Q5W150 140 aa10.93□□□□□ -0.66
CPSF3-201ENST00000238112 SPAG11AQ6PDA7 123 aa10.92□□□□□ -0.66
CPSF3-201ENST00000238112 A8MU10 97 aa10.9□□□□□ -0.67
CPSF3-201ENST00000238112 KRTAP13-3Q3SY46 172 aa10.9□□□□□ -0.67
CPSF3-201ENST00000238112 KRTAP10-2P60368 255 aa10.89□□□□□ -0.67
CPSF3-201ENST00000238112 LINC01558Q9Y6Z2 57 aa10.89□□□□□ -0.67
CPSF3-201ENST00000238112 A6NED7 52 aa10.88□□□□□ -0.67
CPSF3-201ENST00000238112 LINC00313P59037 77 aa10.85□□□□□ -0.67
CPSF3-201ENST00000238112 ALMS1Q8TCU4 4167 aa10.84□□□□□ -0.67
CPSF3-201ENST00000238112 PMAIP1Q13794 54 aa10.83□□□□□ -0.68
CPSF3-201ENST00000238112 DNAH6Q9C0G6 4158 aa10.81□□□□□ -0.68
CPSF3-201ENST00000238112 KRTAP13-2Q52LG2 175 aa10.8□□□□□ -0.68
CPSF3-201ENST00000238112 LCA10Q71F78 164 aa10.8□□□□□ -0.68
CPSF3-201ENST00000238112 DNAH11Q96DT5 4516 aa10.79□□□□□ -0.68
CPSF3-201ENST00000238112 FAM229AH3BQW9 127 aa10.79□□□□□ -0.68
CPSF3-201ENST00000238112 ACYP2P14621 99 aa10.78□□□□□ -0.68
CPSF3-201ENST00000238112 SPTSSBQ8NFR3 76 aa10.77□□□□□ -0.69
CPSF3-201ENST00000238112 Q6ZSA8 131 aa10.76□□□□□ -0.69
CPSF3-201ENST00000238112 PRR26Q8N8Z3 221 aa10.75□□□□□ -0.69
CPSF3-201ENST00000238112 DNAH5Q8TE73 4624 aa10.75□□□□□ -0.69
CPSF3-201ENST00000238112 KRTAP10-1P60331 282 aa10.75□□□□□ -0.69
CPSF3-201ENST00000238112 RETNLBQ9BQ08 111 aa10.75□□□□□ -0.69
CPSF3-201ENST00000238112 CDC42SE1Q9NRR8 79 aa10.74□□□□□ -0.69
CPSF3-201ENST00000238112 ATP11AUNQ6ZP68 121 aa10.74□□□□□ -0.69
CPSF3-201ENST00000238112 DMAC1Q96GE9 116 aa10.71□□□□□ -0.69
CPSF3-201ENST00000238112 IGKV2-30P06310 120 aa10.69□□□□□ -0.7
CPSF3-201ENST00000238112 SPINK7P58062 85 aa10.67□□□□□ -0.7
CPSF3-201ENST00000238112 KRTAP1-4P0C5Y4 121 aa10.67□□□□□ -0.7
CPSF3-201ENST00000238112 KRTAP16-1A8MUX0 517 aa10.66□□□□□ -0.7
CPSF3-201ENST00000238112 DNHD1Q96M86 4753 aa10.66□□□□□ -0.7
CPSF3-201ENST00000238112 C4orf48Q5BLP8 95 aa10.63□□□□□ -0.71
CPSF3-201ENST00000238112 LRP1BQ9NZR2 4599 aa10.62□□□□□ -0.71
CPSF3-201ENST00000238112 PLA2G1BP04054 148 aaKnown RBP10.59□□□□□ -0.71
CPSF3-201ENST00000238112 TYMSOSQ8TAI1 123 aa10.58□□□□□ -0.72
CPSF3-201ENST00000238112 PKD1P98161 4303 aa10.58□□□□□ -0.72
CPSF3-201ENST00000238112 IGKV2D-30A0A075B6S6 120 aa10.57□□□□□ -0.72
CPSF3-201ENST00000238112 KTN1-AS1Q86SY8 53 aa10.57□□□□□ -0.72
CPSF3-201ENST00000238112 A6NN06 94 aa10.56□□□□□ -0.72
CPSF3-201ENST00000238112 SEC61GP60059 68 aa10.55□□□□□ -0.72
CPSF3-201ENST00000238112 SPINK1P00995 79 aa10.55□□□□□ -0.72
CPSF3-201ENST00000238112 FAT2Q9NYQ8 4349 aa10.52□□□□□ -0.72
CPSF3-201ENST00000238112 VPS13BQ7Z7G8 4022 aa10.51□□□□□ -0.73
CPSF3-201ENST00000238112 A0A1B0GU69 56 aa10.51□□□□□ -0.73
CPSF3-201ENST00000238112 HYDINQ4G0P3 5121 aa10.49□□□□□ -0.73
CPSF3-201ENST00000238112 C7orf65Q6ZTY9 151 aa10.48□□□□□ -0.73
CPSF3-201ENST00000238112 LINC00304Q8N9R0 145 aa10.43□□□□□ -0.74
CPSF3-201ENST00000238112 RPS29P62273 56 aaKnown RBP10.39□□□□□ -0.75
CPSF3-201ENST00000238112 UQCR11O14957 56 aa10.33□□□□□ -0.76
CPSF3-201ENST00000238112 SPATA8Q6RVD6 105 aa10.33□□□□□ -0.76
CPSF3-201ENST00000238112 MIR22HGQ0VDD5 57 aa10.3□□□□□ -0.76
CPSF3-201ENST00000238112 Q8N1X5 172 aa10.3□□□□□ -0.76
CPSF3-201ENST00000238112 RBM12B-AS1Q9P1G2 102 aa10.3□□□□□ -0.76
CPSF3-201ENST00000238112 SMR3BP02814 79 aaPredicted RBP10.29□□□□□ -0.76
CPSF3-201ENST00000238112 PKHD1P08F94 4074 aa10.27□□□□□ -0.77
CPSF3-201ENST00000238112 C9orf92A6NGG3 77 aa10.23□□□□□ -0.77
CPSF3-201ENST00000238112 C20orf166-AS1Q96NR2 134 aa10.19□□□□□ -0.78
CPSF3-201ENST00000238112 A8MUU9 505 aa10.19□□□□□ -0.78
CPSF3-201ENST00000238112 SACSQ9NZJ4 4579 aa10.18□□□□□ -0.78
CPSF3-201ENST00000238112 DYNC1H1Q14204 4646 aaKnown RBP10.12□□□□□ -0.79
CPSF3-201ENST00000238112 KRTAP10-4P60372 401 aaPredicted RBP10.11□□□□□ -0.79
CPSF3-201ENST00000238112 A0A1B0GVY2 172 aa10.1□□□□□ -0.79
CPSF3-201ENST00000238112 KRTAP21-3Q3LHN1 58 aa10.1□□□□□ -0.79
CPSF3-201ENST00000238112 PRAC1Q96KF2 57 aa10.08□□□□□ -0.8
CPSF3-201ENST00000238112 PKHD1L1Q86WI1 4243 aa10.05□□□□□ -0.8
CPSF3-201ENST00000238112 ADM2Q7Z4H4 148 aa10.05□□□□□ -0.8
CPSF3-201ENST00000238112 KRTAP3-1Q9BYR8 98 aa10.03□□□□□ -0.8
CPSF3-201ENST00000238112 FAT1Q14517 4588 aa10.03□□□□□ -0.8
CPSF3-201ENST00000238112 APOBP04114 4563 aaKnown RBP10.02□□□□□ -0.81
CPSF3-201ENST00000238112 H0YAA0 97 aa9.93□□□□□ -0.82
CPSF3-201ENST00000238112 A0A1B0GU33 70 aa9.92□□□□□ -0.82
CPSF3-201ENST00000238112 COX6B2Q6YFQ2 88 aa9.9□□□□□ -0.82
CPSF3-201ENST00000238112 H1FX-AS1Q4G0G2 97 aa9.87□□□□□ -0.83
CPSF3-201ENST00000238112 FLG2Q5D862 2391 aaPredicted RBP9.86□□□□□ -0.83
CPSF3-201ENST00000238112 CSAG1Q6PB30 78 aa9.8□□□□□ -0.84
CPSF3-201ENST00000238112 LINC01554Q52M75 96 aa9.79□□□□□ -0.84
CPSF3-201ENST00000238112 RYR2Q92736 4967 aa9.78□□□□□ -0.84
CPSF3-201ENST00000238112 KRTAP10-8P60410 259 aa9.74□□□□□ -0.85
CPSF3-201ENST00000238112 FAT3Q8TDW7 4589 aa9.71□□□□□ -0.86
CPSF3-201ENST00000238112 RPL37P61927 97 aaKnown RBP9.71□□□□□ -0.86
CPSF3-201ENST00000238112 Q5VSD8 79 aa9.7□□□□□ -0.86
CPSF3-201ENST00000238112 TNXBP22105 4242 aa9.68□□□□□ -0.86
CPSF3-201ENST00000238112 LRP1Q07954 4544 aaKnown RBP9.66□□□□□ -0.86
CPSF3-201ENST00000238112 K7ERS5 55 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms