RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 KRTAP10-1P60331 282 aa9.52□□□□□ -0.89
UBE3D-201ENST00000237186 SACSQ9NZJ4 4579 aa9.52□□□□□ -0.89
UBE3D-201ENST00000237186 SPANXA2-OT1Q8N9U9 137 aa9.51□□□□□ -0.89
UBE3D-201ENST00000237186 IGHV6-1A0A0B4J1U7 121 aa9.5□□□□□ -0.89
UBE3D-201ENST00000237186 FAM229BQ4G0N7 80 aa9.49□□□□□ -0.89
UBE3D-201ENST00000237186 C1orf64Q8NEQ6 169 aa9.49□□□□□ -0.89
UBE3D-201ENST00000237186 MRPL34Q9BQ48 92 aaKnown RBP9.47□□□□□ -0.89
UBE3D-201ENST00000237186 KRTAP3-3Q9BYR6 98 aa9.45□□□□□ -0.9
UBE3D-201ENST00000237186 KRTAP3-2Q9BYR7 98 aa9.45□□□□□ -0.9
UBE3D-201ENST00000237186 A0A087X002 238 aa9.43□□□□□ -0.9
UBE3D-201ENST00000237186 NOTCH2NLQ7Z3S9 236 aa9.43□□□□□ -0.9
UBE3D-201ENST00000237186 VPS13BQ7Z7G8 4022 aa9.42□□□□□ -0.9
UBE3D-201ENST00000237186 KRTAP13-2Q52LG2 175 aa9.41□□□□□ -0.9
UBE3D-201ENST00000237186 PRR4Q16378 134 aa9.4□□□□□ -0.91
UBE3D-201ENST00000237186 SPINK6Q6UWN8 80 aa9.39□□□□□ -0.91
UBE3D-201ENST00000237186 C8orf87E5RJ46 101 aa9.38□□□□□ -0.91
UBE3D-201ENST00000237186 IGLV7-46A0A075B6I9 117 aa9.38□□□□□ -0.91
UBE3D-201ENST00000237186 NDUFS5O43920 106 aa9.38□□□□□ -0.91
UBE3D-201ENST00000237186 KRTAP1-4P0C5Y4 121 aa9.38□□□□□ -0.91
UBE3D-201ENST00000237186 LINC00336Q6ZUF6 198 aa9.36□□□□□ -0.91
UBE3D-201ENST00000237186 Q1T7F1 81 aa9.35□□□□□ -0.91
UBE3D-201ENST00000237186 MPLKIPQ8TAP9 179 aa9.35□□□□□ -0.91
UBE3D-201ENST00000237186 RYR2Q92736 4967 aa9.33□□□□□ -0.92
UBE3D-201ENST00000237186 C1orf195Q5TG92 126 aa9.32□□□□□ -0.92
UBE3D-201ENST00000237186 KRTAP13-3Q3SY46 172 aa9.32□□□□□ -0.92
UBE3D-201ENST00000237186 LOC101927531A0A1B0GV80 90 aa9.28□□□□□ -0.92
UBE3D-201ENST00000237186 LINC00313P59037 77 aa9.28□□□□□ -0.92
UBE3D-201ENST00000237186 PKHD1P08F94 4074 aa9.28□□□□□ -0.92
UBE3D-201ENST00000237186 PCOTHQ58A44 107 aa9.28□□□□□ -0.92
UBE3D-201ENST00000237186 LIMD2Q9BT23 127 aa9.28□□□□□ -0.92
UBE3D-201ENST00000237186 KMT2CQ8NEZ4 4911 aaKnown RBP9.27□□□□□ -0.92
UBE3D-201ENST00000237186 Q5W150 140 aa9.27□□□□□ -0.93
UBE3D-201ENST00000237186 DYNC1H1Q14204 4646 aaKnown RBP9.26□□□□□ -0.93
UBE3D-201ENST00000237186 A0A1B0GVY2 172 aa9.25□□□□□ -0.93
UBE3D-201ENST00000237186 PLA2G1BP04054 148 aaKnown RBP9.25□□□□□ -0.93
UBE3D-201ENST00000237186 Q8N9P0 234 aaPredicted RBP9.25□□□□□ -0.93
UBE3D-201ENST00000237186 V9GYY9 64 aa9.24□□□□□ -0.93
UBE3D-201ENST00000237186 SPINK1P00995 79 aa9.21□□□□□ -0.93
UBE3D-201ENST00000237186 COA5Q86WW8 74 aa9.21□□□□□ -0.93
UBE3D-201ENST00000237186 TYMSOSQ8TAI1 123 aa9.21□□□□□ -0.93
UBE3D-201ENST00000237186 C4orf48Q5BLP8 95 aa9.2□□□□□ -0.94
UBE3D-201ENST00000237186 PRO0628Q9UI54 55 aa9.2□□□□□ -0.94
UBE3D-201ENST00000237186 KRTAP16-1A8MUX0 517 aa9.19□□□□□ -0.94
UBE3D-201ENST00000237186 FAM229AH3BQW9 127 aa9.19□□□□□ -0.94
UBE3D-201ENST00000237186 APOBP04114 4563 aaKnown RBP9.17□□□□□ -0.94
UBE3D-201ENST00000237186 RPS29P62273 56 aaKnown RBP9.17□□□□□ -0.94
UBE3D-201ENST00000237186 PKHD1L1Q86WI1 4243 aa9.12□□□□□ -0.95
UBE3D-201ENST00000237186 FAT1Q14517 4588 aa9.12□□□□□ -0.95
UBE3D-201ENST00000237186 HRES1P13985 223 aa9.12□□□□□ -0.95
UBE3D-201ENST00000237186 SPAG11AQ6PDA7 123 aa9.12□□□□□ -0.95
UBE3D-201ENST00000237186 PSPHP1O15172 72 aa9.11□□□□□ -0.95
UBE3D-201ENST00000237186 BRK1Q8WUW1 75 aa9.11□□□□□ -0.95
UBE3D-201ENST00000237186 PRR26Q8N8Z3 221 aa9.1□□□□□ -0.95
UBE3D-201ENST00000237186 LINC00304Q8N9R0 145 aa9.1□□□□□ -0.95
UBE3D-201ENST00000237186 IGKV2-30P06310 120 aa9.09□□□□□ -0.95
UBE3D-201ENST00000237186 A8MUN3 132 aa9.08□□□□□ -0.96
UBE3D-201ENST00000237186 SMR3BP02814 79 aaPredicted RBP9.08□□□□□ -0.96
UBE3D-201ENST00000237186 KRTAP10-4P60372 401 aaPredicted RBP9.07□□□□□ -0.96
UBE3D-201ENST00000237186 Q5VV11 94 aa9.07□□□□□ -0.96
UBE3D-201ENST00000237186 RYR3Q15413 4870 aa9.07□□□□□ -0.96
UBE3D-201ENST00000237186 ACYP2P14621 99 aa9.03□□□□□ -0.96
UBE3D-201ENST00000237186 DMAC1Q96GE9 116 aa9.03□□□□□ -0.96
UBE3D-201ENST00000237186 LINC01558Q9Y6Z2 57 aa9.02□□□□□ -0.96
UBE3D-201ENST00000237186 RETNLBQ9BQ08 111 aa9.02□□□□□ -0.97
UBE3D-201ENST00000237186 PRR15LQ9BU68 103 aa9□□□□□ -0.97
UBE3D-201ENST00000237186 Q75L30 129 aa8.98□□□□□ -0.97
UBE3D-201ENST00000237186 CHKB-CPT1BH3BT56 60 aa8.94□□□□□ -0.98
UBE3D-201ENST00000237186 IGKV2D-30A0A075B6S6 120 aa8.91□□□□□ -0.98
UBE3D-201ENST00000237186 A8MUU9 505 aa8.87□□□□□ -0.99
UBE3D-201ENST00000237186 C20orf166-AS1Q96NR2 134 aa8.87□□□□□ -0.99
UBE3D-201ENST00000237186 C7orf65Q6ZTY9 151 aa8.85□□□□□ -0.99
UBE3D-201ENST00000237186 HSPG2P98160 4391 aa8.84□□□□□ -0.99
UBE3D-201ENST00000237186 RYR1P21817 5038 aa8.83□□□□□ -1
UBE3D-201ENST00000237186 A6NED7 52 aa8.82□□□□□ -1
UBE3D-201ENST00000237186 TNXBP22105 4242 aa8.81□□□□□ -1
UBE3D-201ENST00000237186 LCA10Q71F78 164 aa8.81□□□□□ -1
UBE3D-201ENST00000237186 A8MU10 97 aa8.79□□□□□ -1
UBE3D-201ENST00000237186 Q5VSD8 79 aa8.79□□□□□ -1
UBE3D-201ENST00000237186 C9orf92A6NGG3 77 aa8.79□□□□□ -1
UBE3D-201ENST00000237186 FAT3Q8TDW7 4589 aa8.78□□□□□ -1
UBE3D-201ENST00000237186 CDC42SE1Q9NRR8 79 aa8.77□□□□□ -1.01
UBE3D-201ENST00000237186 KRTAP10-8P60410 259 aa8.74□□□□□ -1.01
UBE3D-201ENST00000237186 EPPK1P58107 5090 aaKnown RBP8.73□□□□□ -1.01
UBE3D-201ENST00000237186 SPINK7P58062 85 aa8.73□□□□□ -1.01
UBE3D-201ENST00000237186 ATP11AUNQ6ZP68 121 aa8.73□□□□□ -1.01
UBE3D-201ENST00000237186 KIAA1109Q2LD37 5005 aa8.71□□□□□ -1.01
UBE3D-201ENST00000237186 Q8N1X5 172 aa8.71□□□□□ -1.01
UBE3D-201ENST00000237186 FLG2Q5D862 2391 aaPredicted RBP8.71□□□□□ -1.02
UBE3D-201ENST00000237186 LRP1Q07954 4544 aaKnown RBP8.71□□□□□ -1.02
UBE3D-201ENST00000237186 KRTAP17-1Q9BYP8 105 aa8.69□□□□□ -1.02
UBE3D-201ENST00000237186 A0A1B0GU69 56 aa8.68□□□□□ -1.02
UBE3D-201ENST00000237186 PMAIP1Q13794 54 aa8.64□□□□□ -1.03
UBE3D-201ENST00000237186 SPTSSBQ8NFR3 76 aa8.62□□□□□ -1.03
UBE3D-201ENST00000237186 KRTAP3-1Q9BYR8 98 aa8.61□□□□□ -1.03
UBE3D-201ENST00000237186 SPATA8Q6RVD6 105 aa8.55□□□□□ -1.04
UBE3D-201ENST00000237186 A6NN06 94 aa8.55□□□□□ -1.04
UBE3D-201ENST00000237186 UQCR11O14957 56 aa8.53□□□□□ -1.04
UBE3D-201ENST00000237186 COX6B2Q6YFQ2 88 aa8.51□□□□□ -1.05
UBE3D-201ENST00000237186 RPL37P61927 97 aaKnown RBP8.5□□□□□ -1.05
UBE3D-201ENST00000237186 MYCBP2O75592 4640 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms