RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 SPTSSBQ8NFR3 76 aa7.4□□□□□ -1.23
NUP88-201ENST00000225696 LOC101927531A0A1B0GV80 90 aa7.39□□□□□ -1.23
NUP88-201ENST00000225696 LINC00483Q53H64 154 aa7.39□□□□□ -1.23
NUP88-201ENST00000225696 TGP01266 2768 aa7.39□□□□□ -1.23
NUP88-201ENST00000225696 A6NED7 52 aa7.39□□□□□ -1.23
NUP88-201ENST00000225696 TP53AIP1Q9HCN2 124 aa7.39□□□□□ -1.23
NUP88-201ENST00000225696 HRES1P13985 223 aa7.38□□□□□ -1.23
NUP88-201ENST00000225696 PSORS1C2Q9UIG4 136 aa7.37□□□□□ -1.23
NUP88-201ENST00000225696 PRKDCP78527 4128 aaKnown RBP7.36□□□□□ -1.23
NUP88-201ENST00000225696 MEGF8Q7Z7M0 2845 aa7.35□□□□□ -1.23
NUP88-201ENST00000225696 Q5W150 140 aa7.35□□□□□ -1.23
NUP88-201ENST00000225696 MRPL34Q9BQ48 92 aaKnown RBP7.35□□□□□ -1.23
NUP88-201ENST00000225696 PLAC8Q9NZF1 115 aa7.35□□□□□ -1.23
NUP88-201ENST00000225696 ALMS1Q8TCU4 4167 aa7.34□□□□□ -1.23
NUP88-201ENST00000225696 DNAH6Q9C0G6 4158 aa7.34□□□□□ -1.23
NUP88-201ENST00000225696 SPINK6Q6UWN8 80 aa7.33□□□□□ -1.24
NUP88-201ENST00000225696 LINC01558Q9Y6Z2 57 aa7.33□□□□□ -1.24
NUP88-201ENST00000225696 IGLV5-52A0A0A0MRZ9 124 aa7.32□□□□□ -1.24
NUP88-201ENST00000225696 SPINK7P58062 85 aa7.32□□□□□ -1.24
NUP88-201ENST00000225696 A0A087WTM6 91 aa7.31□□□□□ -1.24
NUP88-201ENST00000225696 CDK2AP2O75956 126 aa7.31□□□□□ -1.24
NUP88-201ENST00000225696 PRR26Q8N8Z3 221 aa7.3□□□□□ -1.24
NUP88-201ENST00000225696 ATP11AUNQ6ZP68 121 aa7.3□□□□□ -1.24
NUP88-201ENST00000225696 ZNF861PO60384 105 aa7.29□□□□□ -1.24
NUP88-201ENST00000225696 KRTAP13-3Q3SY46 172 aa7.29□□□□□ -1.24
NUP88-201ENST00000225696 CDC42SE1Q9NRR8 79 aa7.29□□□□□ -1.24
NUP88-201ENST00000225696 A6NN06 94 aa7.28□□□□□ -1.24
NUP88-201ENST00000225696 RTL8CO15255 209 aa7.28□□□□□ -1.24
NUP88-201ENST00000225696 DNAH11Q96DT5 4516 aa7.27□□□□□ -1.25
NUP88-201ENST00000225696 ZNF706Q9Y5V0 76 aaPredicted RBP7.27□□□□□ -1.25
NUP88-201ENST00000225696 KTN1-AS1Q86SY8 53 aa7.26□□□□□ -1.25
NUP88-201ENST00000225696 NUPR2A6NF83 97 aa7.25□□□□□ -1.25
NUP88-201ENST00000225696 CIRBP-AS1Q8TBR5 109 aa7.25□□□□□ -1.25
NUP88-201ENST00000225696 RETNLBQ9BQ08 111 aa7.22□□□□□ -1.25
NUP88-201ENST00000225696 DNAH5Q8TE73 4624 aa7.21□□□□□ -1.25
NUP88-201ENST00000225696 RBM12B-AS1Q9P1G2 102 aa7.19□□□□□ -1.26
NUP88-201ENST00000225696 IGLV7-43P04211 117 aa7.19□□□□□ -1.26
NUP88-201ENST00000225696 LRP1BQ9NZR2 4599 aa7.18□□□□□ -1.26
NUP88-201ENST00000225696 ACYP2P14621 99 aa7.13□□□□□ -1.27
NUP88-201ENST00000225696 DMAC1Q96GE9 116 aa7.12□□□□□ -1.27
NUP88-201ENST00000225696 LINC00313P59037 77 aa7.11□□□□□ -1.27
NUP88-201ENST00000225696 C7orf65Q6ZTY9 151 aa7.1□□□□□ -1.27
NUP88-201ENST00000225696 KRTAP13-2Q52LG2 175 aa7.1□□□□□ -1.27
NUP88-201ENST00000225696 VPS13BQ7Z7G8 4022 aa7.09□□□□□ -1.27
NUP88-201ENST00000225696 C8orf87E5RJ46 101 aa7.08□□□□□ -1.28
NUP88-201ENST00000225696 LCE2DQ5TA82 110 aaPredicted RBP7.08□□□□□ -1.28
NUP88-201ENST00000225696 SSBP3-AS1Q7Z2R9 100 aa7.08□□□□□ -1.28
NUP88-201ENST00000225696 PKD1P98161 4303 aa7.07□□□□□ -1.28
NUP88-201ENST00000225696 KRTAP10-2P60368 255 aa7.07□□□□□ -1.28
NUP88-201ENST00000225696 FAT2Q9NYQ8 4349 aa7.06□□□□□ -1.28
NUP88-201ENST00000225696 IGKV2-30P06310 120 aa7.06□□□□□ -1.28
NUP88-201ENST00000225696 C1orf134Q5TEV5 83 aa7.06□□□□□ -1.28
NUP88-201ENST00000225696 KRTAP16-1A8MUX0 517 aa7.05□□□□□ -1.28
NUP88-201ENST00000225696 FAM229AH3BQW9 127 aa7.05□□□□□ -1.28
NUP88-201ENST00000225696 ADM2Q7Z4H4 148 aa7.05□□□□□ -1.28
NUP88-201ENST00000225696 HYDINQ4G0P3 5121 aa7.05□□□□□ -1.28
NUP88-201ENST00000225696 PRAC1Q96KF2 57 aa7.05□□□□□ -1.28
NUP88-201ENST00000225696 DNHD1Q96M86 4753 aa7.04□□□□□ -1.28
NUP88-201ENST00000225696 A0A1B0GU69 56 aa7.03□□□□□ -1.28
NUP88-201ENST00000225696 IGKV2D-30A0A075B6S6 120 aa7.01□□□□□ -1.29
NUP88-201ENST00000225696 LY6G6CO95867 125 aa6.99□□□□□ -1.29
NUP88-201ENST00000225696 SPATA8Q6RVD6 105 aa6.97□□□□□ -1.29
NUP88-201ENST00000225696 KRTAP1-4P0C5Y4 121 aa6.96□□□□□ -1.29
NUP88-201ENST00000225696 KRTAP10-1P60331 282 aa6.96□□□□□ -1.3
NUP88-201ENST00000225696 PKHD1P08F94 4074 aa6.93□□□□□ -1.3
NUP88-201ENST00000225696 MIR22HGQ0VDD5 57 aa6.93□□□□□ -1.3
NUP88-201ENST00000225696 UQCR11O14957 56 aa6.91□□□□□ -1.3
NUP88-201ENST00000225696 PLA2G1BP04054 148 aaKnown RBP6.91□□□□□ -1.3
NUP88-201ENST00000225696 SPINK1P00995 79 aa6.9□□□□□ -1.3
NUP88-201ENST00000225696 Q6ZSA8 131 aa6.9□□□□□ -1.3
NUP88-201ENST00000225696 Q8N1X5 172 aa6.9□□□□□ -1.3
NUP88-201ENST00000225696 TYMSOSQ8TAI1 123 aa6.83□□□□□ -1.32
NUP88-201ENST00000225696 C4orf48Q5BLP8 95 aa6.81□□□□□ -1.32
NUP88-201ENST00000225696 FAT1Q14517 4588 aa6.78□□□□□ -1.32
NUP88-201ENST00000225696 CSAG1Q6PB30 78 aa6.77□□□□□ -1.33
NUP88-201ENST00000225696 LINC01554Q52M75 96 aa6.76□□□□□ -1.33
NUP88-201ENST00000225696 KRTAP3-3Q9BYR6 98 aa6.76□□□□□ -1.33
NUP88-201ENST00000225696 KRTAP3-2Q9BYR7 98 aa6.76□□□□□ -1.33
NUP88-201ENST00000225696 SACSQ9NZJ4 4579 aa6.76□□□□□ -1.33
NUP88-201ENST00000225696 KRTAP3-1Q9BYR8 98 aa6.74□□□□□ -1.33
NUP88-201ENST00000225696 C9orf92A6NGG3 77 aa6.74□□□□□ -1.33
NUP88-201ENST00000225696 H0YAA0 97 aa6.74□□□□□ -1.33
NUP88-201ENST00000225696 LINC00304Q8N9R0 145 aa6.72□□□□□ -1.33
NUP88-201ENST00000225696 DYNC1H1Q14204 4646 aaKnown RBP6.71□□□□□ -1.34
NUP88-201ENST00000225696 PKHD1L1Q86WI1 4243 aa6.71□□□□□ -1.34
NUP88-201ENST00000225696 SMR3BP02814 79 aaPredicted RBP6.68□□□□□ -1.34
NUP88-201ENST00000225696 FLG2Q5D862 2391 aaPredicted RBP6.67□□□□□ -1.34
NUP88-201ENST00000225696 APOBP04114 4563 aaKnown RBP6.65□□□□□ -1.34
NUP88-201ENST00000225696 A8MUU9 505 aa6.65□□□□□ -1.35
NUP88-201ENST00000225696 C20orf166-AS1Q96NR2 134 aa6.63□□□□□ -1.35
NUP88-201ENST00000225696 A0A1B0GU33 70 aa6.62□□□□□ -1.35
NUP88-201ENST00000225696 RPS29P62273 56 aaKnown RBP6.61□□□□□ -1.35
NUP88-201ENST00000225696 H1FX-AS1Q4G0G2 97 aa6.58□□□□□ -1.36
NUP88-201ENST00000225696 A0A1B0GVY2 172 aa6.57□□□□□ -1.36
NUP88-201ENST00000225696 HSPG2P98160 4391 aa6.55□□□□□ -1.36
NUP88-201ENST00000225696 KRTAP10-4P60372 401 aaPredicted RBP6.54□□□□□ -1.36
NUP88-201ENST00000225696 LRP1Q07954 4544 aaKnown RBP6.54□□□□□ -1.36
NUP88-201ENST00000225696 CRIPTQ9P021 101 aa6.54□□□□□ -1.36
NUP88-201ENST00000225696 MYCBP2O75592 4640 aa6.52□□□□□ -1.37
NUP88-201ENST00000225696 KRTAP25-1Q3LHN0 102 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms