RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 PRO1933Q9H354 126 aa10.45□□□□□ -0.74
CLN3-259ENST00000637551 GHRHP01286 108 aa10.44□□□□□ -0.74
CLN3-259ENST00000637551 Q6ZQY7 126 aa10.44□□□□□ -0.74
CLN3-259ENST00000637551 Q8N377 158 aa10.44□□□□□ -0.74
CLN3-259ENST00000637551 TPRXLQ17RH7 258 aa10.43□□□□□ -0.74
CLN3-259ENST00000637551 DEFB105AQ8NG35 78 aa10.43□□□□□ -0.74
CLN3-259ENST00000637551 MUC2Q02817 5179 aa10.43□□□□□ -0.74
CLN3-259ENST00000637551 LIMD2Q9BT23 127 aa10.42□□□□□ -0.74
CLN3-259ENST00000637551 FAT4Q6V0I7 4981 aa10.42□□□□□ -0.74
CLN3-259ENST00000637551 Q1RN00 199 aa10.41□□□□□ -0.74
CLN3-259ENST00000637551 IGLV8-61A0A075B6I0 122 aa10.4□□□□□ -0.74
CLN3-259ENST00000637551 F8WEM9 126 aa10.4□□□□□ -0.74
CLN3-259ENST00000637551 H7C2G1 150 aa10.4□□□□□ -0.74
CLN3-259ENST00000637551 Q5XG85 94 aa10.4□□□□□ -0.74
CLN3-259ENST00000637551 Q6JHZ5 121 aa10.38□□□□□ -0.75
CLN3-259ENST00000637551 IGLV7-46A0A075B6I9 117 aa10.37□□□□□ -0.75
CLN3-259ENST00000637551 H3BQ85 93 aa10.36□□□□□ -0.75
CLN3-259ENST00000637551 COX6CP09669 75 aa10.36□□□□□ -0.75
CLN3-259ENST00000637551 RETNLBQ9BQ08 111 aa10.36□□□□□ -0.75
CLN3-259ENST00000637551 M0R143 59 aa10.34□□□□□ -0.75
CLN3-259ENST00000637551 TRIAP1O43715 76 aa10.34□□□□□ -0.75
CLN3-259ENST00000637551 CLEC2BQ92478 149 aa10.31□□□□□ -0.76
CLN3-259ENST00000637551 FAM218AQ96MZ4 157 aa10.31□□□□□ -0.76
CLN3-259ENST00000637551 SNHG12Q9BXW3 62 aa10.31□□□□□ -0.76
CLN3-259ENST00000637551 TSTD3H0UI37 97 aa10.3□□□□□ -0.76
CLN3-259ENST00000637551 LOC105371267A0A1B0GV96 52 aa10.28□□□□□ -0.76
CLN3-259ENST00000637551 K7ERJ3 54 aa10.28□□□□□ -0.76
CLN3-259ENST00000637551 PSMB2P49721 201 aa10.28□□□□□ -0.76
CLN3-259ENST00000637551 DNAL4O96015 105 aa10.27□□□□□ -0.77
CLN3-259ENST00000637551 KRTAP13-3Q3SY46 172 aa10.26□□□□□ -0.77
CLN3-259ENST00000637551 TCL1BO95988 128 aa10.25□□□□□ -0.77
CLN3-259ENST00000637551 CDIP1Q9H305 208 aa10.25□□□□□ -0.77
CLN3-259ENST00000637551 ASB16-AS1Q495Z4 193 aa10.24□□□□□ -0.77
CLN3-259ENST00000637551 A0A0U1RQV1 116 aa10.23□□□□□ -0.77
CLN3-259ENST00000637551 TRACP01848 142 aa10.23□□□□□ -0.77
CLN3-259ENST00000637551 NDUFV3P56181 108 aaKnown RBP10.23□□□□□ -0.77
CLN3-259ENST00000637551 LCE2AQ5TA79 106 aaPredicted RBP10.23□□□□□ -0.77
CLN3-259ENST00000637551 Q6Q795 121 aa10.23□□□□□ -0.77
CLN3-259ENST00000637551 IGFL1Q6UW32 110 aa10.23□□□□□ -0.77
CLN3-259ENST00000637551 ORMDL1Q9P0S3 153 aa10.23□□□□□ -0.77
CLN3-259ENST00000637551 TMEM256-PLSCR3K7ERE1 68 aa10.21□□□□□ -0.77
CLN3-259ENST00000637551 HRCT1Q6UXD1 115 aa10.21□□□□□ -0.77
CLN3-259ENST00000637551 TRBV7-7A0A0K0K1E9 115 aa10.2□□□□□ -0.78
CLN3-259ENST00000637551 LST1O00453 97 aa10.19□□□□□ -0.78
CLN3-259ENST00000637551 SCGB1C2P0DMR2 95 aa10.16□□□□□ -0.78
CLN3-259ENST00000637551 UBE2V1Q13404 147 aa10.16□□□□□ -0.78
CLN3-259ENST00000637551 TEN1Q86WV5 123 aa10.16□□□□□ -0.78
CLN3-259ENST00000637551 SS18L2Q9UHA2 77 aa10.16□□□□□ -0.78
CLN3-259ENST00000637551 H3BMG7 143 aa10.15□□□□□ -0.78
CLN3-259ENST00000637551 FABP2P12104 132 aa10.15□□□□□ -0.78
CLN3-259ENST00000637551 C1orf195Q5TG92 126 aa10.15□□□□□ -0.78
CLN3-259ENST00000637551 LYRM7Q5U5X0 104 aa10.15□□□□□ -0.78
CLN3-259ENST00000637551 A0A0G2JQZ4 141 aa10.13□□□□□ -0.79
CLN3-259ENST00000637551 H3BUT2 72 aa10.13□□□□□ -0.79
CLN3-259ENST00000637551 XP32Q5T750 250 aa10.11□□□□□ -0.79
CLN3-259ENST00000637551 ATXN8Q156A1 80 aa10.08□□□□□ -0.8
CLN3-259ENST00000637551 TRBV20-1A0A075B6N2 111 aa10.07□□□□□ -0.8
CLN3-259ENST00000637551 TRBV7-4A0A0J9YYF1 115 aa10.07□□□□□ -0.8
CLN3-259ENST00000637551 SEC61BP60468 96 aaKnown RBP10.07□□□□□ -0.8
CLN3-259ENST00000637551 ANKRD29Q8N6D5 301 aa10.06□□□□□ -0.8
CLN3-259ENST00000637551 C21orf62-AS1Q17RA5 79 aa10.05□□□□□ -0.8
CLN3-259ENST00000637551 FSIP2Q5CZC0 6907 aa10.04□□□□□ -0.8
CLN3-259ENST00000637551 BAALC-AS2P0C853 105 aa10.01□□□□□ -0.81
CLN3-259ENST00000637551 RBM3P98179 157 aaKnown RBP10.01□□□□□ -0.81
CLN3-259ENST00000637551 A0A1W2PNM2 257 aa10□□□□□ -0.81
CLN3-259ENST00000637551 MUC17Q685J3 4493 aa10□□□□□ -0.81
CLN3-259ENST00000637551 A0A087WSZ3 146 aa9.99□□□□□ -0.81
CLN3-259ENST00000637551 BATFQ16520 125 aa9.99□□□□□ -0.81
CLN3-259ENST00000637551 A0A1B0GW54 56 aa9.98□□□□□ -0.81
CLN3-259ENST00000637551 C9orf118A6NHY6 69 aa9.98□□□□□ -0.81
CLN3-259ENST00000637551 JMJD7-PLA2G4BH0Y9G9 81 aa9.98□□□□□ -0.81
CLN3-259ENST00000637551 DSCR8Q96T75 97 aa9.98□□□□□ -0.81
CLN3-259ENST00000637551 CCKP06307 115 aa9.96□□□□□ -0.82
CLN3-259ENST00000637551 PDE6GP18545 87 aa9.96□□□□□ -0.82
CLN3-259ENST00000637551 TAX1BP3O14907 124 aa9.94□□□□□ -0.82
CLN3-259ENST00000637551 NAA38Q9BRA0 125 aaKnown RBP9.94□□□□□ -0.82
CLN3-259ENST00000637551 C9orf92A6NGG3 77 aa9.93□□□□□ -0.82
CLN3-259ENST00000637551 CRCT1Q9UGL9 99 aa9.93□□□□□ -0.82
CLN3-259ENST00000637551 A0A1W2PPM0 123 aa9.92□□□□□ -0.82
CLN3-259ENST00000637551 C9JAW5 83 aa9.92□□□□□ -0.82
CLN3-259ENST00000637551 Q96NJ1 140 aa9.92□□□□□ -0.82
CLN3-259ENST00000637551 LOC110117498A0A087WWA1 95 aa9.9□□□□□ -0.82
CLN3-259ENST00000637551 H3BT86 120 aa9.9□□□□□ -0.82
CLN3-259ENST00000637551 LCE2DQ5TA82 110 aaPredicted RBP9.89□□□□□ -0.83
CLN3-259ENST00000637551 RPL37P61927 97 aaKnown RBP9.88□□□□□ -0.83
CLN3-259ENST00000637551 COL5A1-AS1Q5SY13 56 aa9.88□□□□□ -0.83
CLN3-259ENST00000637551 OBSCN-AS1Q96MR7 158 aa9.88□□□□□ -0.83
CLN3-259ENST00000637551 A0A1B0GV72 72 aa9.85□□□□□ -0.83
CLN3-259ENST00000637551 Q6ZQT0 140 aa9.85□□□□□ -0.83
CLN3-259ENST00000637551 LINC00472Q9H8W2 130 aa9.85□□□□□ -0.83
CLN3-259ENST00000637551 Q75L30 129 aa9.84□□□□□ -0.83
CLN3-259ENST00000637551 J3KT08 172 aa9.81□□□□□ -0.84
CLN3-259ENST00000637551 VPS25Q9BRG1 176 aa9.81□□□□□ -0.84
CLN3-259ENST00000637551 SIGMAR1Q99720 223 aa9.8□□□□□ -0.84
CLN3-259ENST00000637551 IGKV4-1P06312 121 aa9.79□□□□□ -0.84
CLN3-259ENST00000637551 PCOTHQ58A44 107 aa9.79□□□□□ -0.84
CLN3-259ENST00000637551 SPCS1Q9Y6A9 102 aa9.79□□□□□ -0.84
CLN3-259ENST00000637551 C20orf166-AS1Q96NR2 134 aa9.78□□□□□ -0.84
CLN3-259ENST00000637551 C14orf132Q9NPU4 83 aa9.76□□□□□ -0.85
CLN3-259ENST00000637551 A8MUU9 505 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms