RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 DEFB131AP59861 70 aa1.3□□□□□ -2.2
VIM-210ENST00000637053 APLNQ9ULZ1 77 aa1.3□□□□□ -2.2
VIM-210ENST00000637053 RP1L1Q8IWN7 2480 aaPredicted RBP1.3□□□□□ -2.2
VIM-210ENST00000637053 SPRR1AP35321 89 aa1.29□□□□□ -2.2
VIM-210ENST00000637053 WT1-ASQ06250 92 aa1.29□□□□□ -2.2
VIM-210ENST00000637053 PRO0255Q9UI72 69 aa1.29□□□□□ -2.2
VIM-210ENST00000637053 KRTAP12-1P59990 96 aa1.28□□□□□ -2.2
VIM-210ENST00000637053 DEFB105AQ8NG35 78 aa1.28□□□□□ -2.2
VIM-210ENST00000637053 TEP1Q99973 2627 aaKnown RBP1.28□□□□□ -2.2
VIM-210ENST00000637053 DOPEY1Q5JWR5 2465 aa1.27□□□□□ -2.21
VIM-210ENST00000637053 PTPRZ1P23471 2315 aaPredicted RBP1.27□□□□□ -2.21
VIM-210ENST00000637053 KRTAP21-2Q3LI59 83 aa1.27□□□□□ -2.21
VIM-210ENST00000637053 CNTRLQ7Z7A1 2325 aa1.27□□□□□ -2.21
VIM-210ENST00000637053 Q5VSD8 79 aa1.26□□□□□ -2.21
VIM-210ENST00000637053 EPG5Q9HCE0 2579 aa1.26□□□□□ -2.21
VIM-210ENST00000637053 FASNP49327 2511 aaKnown RBP1.26□□□□□ -2.21
VIM-210ENST00000637053 PCNX1Q96RV3 2341 aa1.26□□□□□ -2.21
VIM-210ENST00000637053 DSPP15924 2871 aaKnown RBP1.25□□□□□ -2.21
VIM-210ENST00000637053 A8MTW9 85 aa1.25□□□□□ -2.21
VIM-210ENST00000637053 H3BUA1 57 aa1.25□□□□□ -2.21
VIM-210ENST00000637053 TOMM7Q9P0U1 55 aa1.25□□□□□ -2.21
VIM-210ENST00000637053 ABCA2Q9BZC7 2435 aa1.25□□□□□ -2.21
VIM-210ENST00000637053 PKDREJQ9NTG1 2253 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 ANKRD11Q6UB99 2663 aaPredicted RBP1.24□□□□□ -2.21
VIM-210ENST00000637053 PIEZO1Q92508 2521 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 SPRR1BP22528 89 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 PRLHP81277 87 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 CLPSL2Q6UWE3 100 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 TMEM167AQ8TBQ9 72 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 DEFB104AQ8WTQ1 72 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 CHD6Q8TD26 2715 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 BDP1A6H8Y1 2624 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 FLNBO75369 2602 aaKnown RBP1.24□□□□□ -2.21
VIM-210ENST00000637053 FBN1P35555 2871 aaKnown RBP1.24□□□□□ -2.21
VIM-210ENST00000637053 REV3LO60673 3130 aa1.24□□□□□ -2.21
VIM-210ENST00000637053 ROS1P08922 2347 aa1.23□□□□□ -2.21
VIM-210ENST00000637053 DEFB109BQ30KR1 87 aa1.23□□□□□ -2.21
VIM-210ENST00000637053 ITPR3Q14573 2671 aa1.22□□□□□ -2.21
VIM-210ENST00000637053 COL6A3P12111 3177 aa1.22□□□□□ -2.21
VIM-210ENST00000637053 C2CD3Q4AC94 2353 aa1.22□□□□□ -2.21
VIM-210ENST00000637053 HECTD1Q9ULT8 2610 aa1.22□□□□□ -2.21
VIM-210ENST00000637053 KRTAP10-10P60014 251 aa1.22□□□□□ -2.21
VIM-210ENST00000637053 KLK9Q2XQG4 91 aa1.22□□□□□ -2.21
VIM-210ENST00000637053 DEFB106AQ8N104 65 aa1.22□□□□□ -2.21
VIM-210ENST00000637053 S4R3F8 94 aa1.22□□□□□ -2.21
VIM-210ENST00000637053 PTPN13Q12923 2485 aa1.22□□□□□ -2.21
VIM-210ENST00000637053 USF3Q68DE3 2245 aa1.21□□□□□ -2.21
VIM-210ENST00000637053 K7EIM0 57 aa1.21□□□□□ -2.22
VIM-210ENST00000637053 KRTAP6-3Q3LI67 103 aa1.21□□□□□ -2.22
VIM-210ENST00000637053 UTRNP46939 3433 aa1.21□□□□□ -2.22
VIM-210ENST00000637053 ABCA12Q86UK0 2595 aa1.21□□□□□ -2.22
VIM-210ENST00000637053 CELSR2Q9HCU4 2923 aa1.21□□□□□ -2.22
VIM-210ENST00000637053 FBN3Q75N90 2809 aa1.2□□□□□ -2.22
VIM-210ENST00000637053 RPL39P5Q59GN2 51 aa1.2□□□□□ -2.22
VIM-210ENST00000637053 DEFB119Q8N690 84 aa1.2□□□□□ -2.22
VIM-210ENST00000637053 MYO18BQ8IUG5 2567 aa1.2□□□□□ -2.22
VIM-210ENST00000637053 SPTBN1Q01082 2364 aaKnown RBP1.2□□□□□ -2.22
VIM-210ENST00000637053 GCN1Q92616 2671 aaKnown RBP1.2□□□□□ -2.22
VIM-210ENST00000637053 EYSQ5T1H1 3165 aa1.19□□□□□ -2.22
VIM-210ENST00000637053 ASH1LQ9NR48 2969 aaKnown RBP1.19□□□□□ -2.22
VIM-210ENST00000637053 UNC80Q8N2C7 3258 aa1.19□□□□□ -2.22
VIM-210ENST00000637053 SPTBN2O15020 2390 aa1.19□□□□□ -2.22
VIM-210ENST00000637053 SETD2Q9BYW2 2564 aaPredicted RBP1.18□□□□□ -2.22
VIM-210ENST00000637053 EP400Q96L91 3159 aa1.18□□□□□ -2.22
VIM-210ENST00000637053 MUC6Q6W4X9 2439 aa1.18□□□□□ -2.22
VIM-210ENST00000637053 SZT2Q5T011 3432 aa1.18□□□□□ -2.22
VIM-210ENST00000637053 LAMA2P24043 3122 aaKnown RBP1.18□□□□□ -2.22
VIM-210ENST00000637053 VCANP13611 3396 aa1.17□□□□□ -2.22
VIM-210ENST00000637053 GVINP1Q7Z2Y8 2422 aa1.17□□□□□ -2.22
VIM-210ENST00000637053 DEFB108AA8MXU0 73 aa1.17□□□□□ -2.22
VIM-210ENST00000637053 CSPG4Q6UVK1 2322 aa1.17□□□□□ -2.22
VIM-210ENST00000637053 CFAP47Q6ZTR5 3102 aa1.16□□□□□ -2.22
VIM-210ENST00000637053 ZNF292O60281 2723 aa1.16□□□□□ -2.22
VIM-210ENST00000637053 SPINK1P00995 79 aa1.16□□□□□ -2.22
VIM-210ENST00000637053 KRTAP12-4P60329 112 aa1.16□□□□□ -2.22
VIM-210ENST00000637053 KRTAP13-1Q8IUC0 172 aa1.16□□□□□ -2.22
VIM-210ENST00000637053 RANBP2P49792 3224 aaKnown RBP1.15□□□□□ -2.22
VIM-210ENST00000637053 TTC28Q96AY4 2481 aa1.15□□□□□ -2.22
VIM-210ENST00000637053 GOLGB1Q14789 3259 aaKnown RBP1.15□□□□□ -2.22
VIM-210ENST00000637053 A0A0D9SG42 100 aa1.15□□□□□ -2.23
VIM-210ENST00000637053 NOP10Q9NPE3 64 aaKnown RBP1.15□□□□□ -2.23
VIM-210ENST00000637053 HELZ2Q9BYK8 2649 aaKnown RBP1.15□□□□□ -2.23
VIM-210ENST00000637053 HIVEP2P31629 2446 aa1.15□□□□□ -2.23
VIM-210ENST00000637053 ZFHX4Q86UP3 3567 aa1.14□□□□□ -2.23
VIM-210ENST00000637053 KALRNO60229 2985 aa1.14□□□□□ -2.23
VIM-210ENST00000637053 SPTBN4Q9H254 2564 aa1.14□□□□□ -2.23
VIM-210ENST00000637053 DNAH12Q6ZR08 3092 aa1.14□□□□□ -2.23
VIM-210ENST00000637053 SPG11Q96JI7 2443 aa1.14□□□□□ -2.23
VIM-210ENST00000637053 CEP250Q9BV73 2442 aa1.13□□□□□ -2.23
VIM-210ENST00000637053 MAP1BP46821 2468 aaKnown RBP1.12□□□□□ -2.23
VIM-210ENST00000637053 CACNA1HO95180 2353 aa1.12□□□□□ -2.23
VIM-210ENST00000637053 MYO9AB2RTY4 2548 aa1.12□□□□□ -2.23
VIM-210ENST00000637053 MEGF8Q7Z7M0 2845 aa1.12□□□□□ -2.23
VIM-210ENST00000637053 CHD7Q9P2D1 2997 aa1.12□□□□□ -2.23
VIM-210ENST00000637053 F8P00451 2351 aa1.12□□□□□ -2.23
VIM-210ENST00000637053 WNK1Q9H4A3 2382 aa1.12□□□□□ -2.23
VIM-210ENST00000637053 DNAH11Q96DT5 4516 aa1.12□□□□□ -2.23
VIM-210ENST00000637053 CEP290O15078 2479 aa1.11□□□□□ -2.23
VIM-210ENST00000637053 SRRM2Q9UQ35 2752 aaKnown RBP1.11□□□□□ -2.23
VIM-210ENST00000637053 PRRC2CQ9Y520 2896 aaKnown RBP1.1□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms