RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 F8WEM9 126 aa11.75□□□□□ -0.53
CLN3-240ENST00000631023 CD164Q04900 197 aa11.75□□□□□ -0.53
CLN3-240ENST00000631023 SMIM6P0DI80 62 aa11.74□□□□□ -0.53
CLN3-240ENST00000631023 HRCT1Q6UXD1 115 aa11.74□□□□□ -0.53
CLN3-240ENST00000631023 PPDPFLQ8WWR9 84 aa11.74□□□□□ -0.53
CLN3-240ENST00000631023 LIMD2Q9BT23 127 aa11.73□□□□□ -0.53
CLN3-240ENST00000631023 TPRXLQ17RH7 258 aa11.72□□□□□ -0.53
CLN3-240ENST00000631023 OCIAD2Q56VL3 154 aa11.71□□□□□ -0.53
CLN3-240ENST00000631023 SNHG12Q9BXW3 62 aa11.7□□□□□ -0.54
CLN3-240ENST00000631023 A0A1B0GX51 115 aa11.69□□□□□ -0.54
CLN3-240ENST00000631023 K7ERJ3 54 aa11.69□□□□□ -0.54
CLN3-240ENST00000631023 PSMB2P49721 201 aa11.69□□□□□ -0.54
CLN3-240ENST00000631023 TRIAP1O43715 76 aa11.68□□□□□ -0.54
CLN3-240ENST00000631023 FAM218AQ96MZ4 157 aa11.68□□□□□ -0.54
CLN3-240ENST00000631023 CDIP1Q9H305 208 aa11.68□□□□□ -0.54
CLN3-240ENST00000631023 GHRHP01286 108 aa11.67□□□□□ -0.54
CLN3-240ENST00000631023 COX6CP09669 75 aa11.67□□□□□ -0.54
CLN3-240ENST00000631023 Q6JHZ5 121 aa11.66□□□□□ -0.54
CLN3-240ENST00000631023 A0A0G2JQZ4 141 aa11.64□□□□□ -0.55
CLN3-240ENST00000631023 IGLV8-61A0A075B6I0 122 aa11.63□□□□□ -0.55
CLN3-240ENST00000631023 Q5XG85 94 aa11.62□□□□□ -0.55
CLN3-240ENST00000631023 CLEC2BQ92478 149 aa11.61□□□□□ -0.55
CLN3-240ENST00000631023 LOC105371267A0A1B0GV96 52 aa11.6□□□□□ -0.55
CLN3-240ENST00000631023 M0R143 59 aa11.6□□□□□ -0.55
CLN3-240ENST00000631023 DNAL4O96015 105 aa11.59□□□□□ -0.55
CLN3-240ENST00000631023 KRTAP13-3Q3SY46 172 aa11.59□□□□□ -0.55
CLN3-240ENST00000631023 TSTD3H0UI37 97 aa11.58□□□□□ -0.55
CLN3-240ENST00000631023 IGFL1Q6UW32 110 aa11.58□□□□□ -0.55
CLN3-240ENST00000631023 TCL1BO95988 128 aa11.57□□□□□ -0.56
CLN3-240ENST00000631023 NDUFV3P56181 108 aaKnown RBP11.57□□□□□ -0.56
CLN3-240ENST00000631023 FABP2P12104 132 aa11.56□□□□□ -0.56
CLN3-240ENST00000631023 RNF213Q63HN8 5207 aa11.55□□□□□ -0.56
CLN3-240ENST00000631023 H3BQ85 93 aa11.55□□□□□ -0.56
CLN3-240ENST00000631023 SCGB1C2P0DMR2 95 aa11.55□□□□□ -0.56
CLN3-240ENST00000631023 H3BUT2 72 aa11.54□□□□□ -0.56
CLN3-240ENST00000631023 ORMDL1Q9P0S3 153 aa11.54□□□□□ -0.56
CLN3-240ENST00000631023 TRBV7-7A0A0K0K1E9 115 aa11.51□□□□□ -0.57
CLN3-240ENST00000631023 H3BMG7 143 aa11.5□□□□□ -0.57
CLN3-240ENST00000631023 C1orf195Q5TG92 126 aa11.5□□□□□ -0.57
CLN3-240ENST00000631023 TMEM256-PLSCR3K7ERE1 68 aa11.49□□□□□ -0.57
CLN3-240ENST00000631023 TRACP01848 142 aa11.48□□□□□ -0.57
CLN3-240ENST00000631023 LST1O00453 97 aa11.45□□□□□ -0.58
CLN3-240ENST00000631023 ASB16-AS1Q495Z4 193 aa11.45□□□□□ -0.58
CLN3-240ENST00000631023 TEN1Q86WV5 123 aa11.45□□□□□ -0.58
CLN3-240ENST00000631023 Q6Q795 121 aa11.44□□□□□ -0.58
CLN3-240ENST00000631023 UBE2V1Q13404 147 aa11.41□□□□□ -0.58
CLN3-240ENST00000631023 BATFQ16520 125 aa11.4□□□□□ -0.58
CLN3-240ENST00000631023 SS18L2Q9UHA2 77 aa11.4□□□□□ -0.58
CLN3-240ENST00000631023 XP32Q5T750 250 aa11.39□□□□□ -0.59
CLN3-240ENST00000631023 ANKRD29Q8N6D5 301 aa11.39□□□□□ -0.59
CLN3-240ENST00000631023 C9orf92A6NGG3 77 aa11.38□□□□□ -0.59
CLN3-240ENST00000631023 SEC61BP60468 96 aaKnown RBP11.38□□□□□ -0.59
CLN3-240ENST00000631023 NAA38Q9BRA0 125 aaKnown RBP11.38□□□□□ -0.59
CLN3-240ENST00000631023 ATXN8Q156A1 80 aa11.37□□□□□ -0.59
CLN3-240ENST00000631023 A0A1B0GV72 72 aa11.36□□□□□ -0.59
CLN3-240ENST00000631023 LYRM7Q5U5X0 104 aa11.36□□□□□ -0.59
CLN3-240ENST00000631023 BAALC-AS2P0C853 105 aa11.34□□□□□ -0.59
CLN3-240ENST00000631023 MUC17Q685J3 4493 aa11.34□□□□□ -0.59
CLN3-240ENST00000631023 A0A087WSZ3 146 aa11.33□□□□□ -0.6
CLN3-240ENST00000631023 MUC2Q02817 5179 aa11.32□□□□□ -0.6
CLN3-240ENST00000631023 A0A1W2PNM2 257 aa11.32□□□□□ -0.6
CLN3-240ENST00000631023 TRBV7-4A0A0J9YYF1 115 aa11.3□□□□□ -0.6
CLN3-240ENST00000631023 A0A0U1RQV1 116 aa11.3□□□□□ -0.6
CLN3-240ENST00000631023 RBM3P98179 157 aaKnown RBP11.3□□□□□ -0.6
CLN3-240ENST00000631023 TRBV20-1A0A075B6N2 111 aa11.28□□□□□ -0.6
CLN3-240ENST00000631023 CCKP06307 115 aa11.28□□□□□ -0.6
CLN3-240ENST00000631023 DSCR8Q96T75 97 aa11.28□□□□□ -0.6
CLN3-240ENST00000631023 C9orf118A6NHY6 69 aa11.25□□□□□ -0.61
CLN3-240ENST00000631023 C9JAW5 83 aa11.21□□□□□ -0.61
CLN3-240ENST00000631023 TAX1BP3O14907 124 aa11.21□□□□□ -0.61
CLN3-240ENST00000631023 JMJD7-PLA2G4BH0Y9G9 81 aa11.2□□□□□ -0.62
CLN3-240ENST00000631023 VPS25Q9BRG1 176 aa11.2□□□□□ -0.62
CLN3-240ENST00000631023 Q96NJ1 140 aa11.2□□□□□ -0.62
CLN3-240ENST00000631023 A0A1W2PPM0 123 aa11.18□□□□□ -0.62
CLN3-240ENST00000631023 PCOTHQ58A44 107 aa11.17□□□□□ -0.62
CLN3-240ENST00000631023 OBSCN-AS1Q96MR7 158 aa11.17□□□□□ -0.62
CLN3-240ENST00000631023 RPL37P61927 97 aaKnown RBP11.16□□□□□ -0.62
CLN3-240ENST00000631023 C21orf62-AS1Q17RA5 79 aa11.16□□□□□ -0.62
CLN3-240ENST00000631023 IGKV4-1P06312 121 aa11.13□□□□□ -0.63
CLN3-240ENST00000631023 SIGMAR1Q99720 223 aa11.13□□□□□ -0.63
CLN3-240ENST00000631023 PDE6GP18545 87 aa11.12□□□□□ -0.63
CLN3-240ENST00000631023 KRTAP4-1Q9BYQ7 146 aa11.12□□□□□ -0.63
CLN3-240ENST00000631023 LOC110117498A0A087WWA1 95 aa11.11□□□□□ -0.63
CLN3-240ENST00000631023 COL5A1-AS1Q5SY13 56 aa11.11□□□□□ -0.63
CLN3-240ENST00000631023 LINC00472Q9H8W2 130 aa11.11□□□□□ -0.63
CLN3-240ENST00000631023 Q6ZQT0 140 aa11.09□□□□□ -0.63
CLN3-240ENST00000631023 A0A1B0GW54 56 aa11.08□□□□□ -0.64
CLN3-240ENST00000631023 H3BT86 120 aa11.08□□□□□ -0.64
CLN3-240ENST00000631023 DEFB116Q30KQ4 102 aa11.07□□□□□ -0.64
CLN3-240ENST00000631023 Q75L30 129 aa11.07□□□□□ -0.64
CLN3-240ENST00000631023 C14orf132Q9NPU4 83 aa11.07□□□□□ -0.64
CLN3-240ENST00000631023 SPCS1Q9Y6A9 102 aa11.05□□□□□ -0.64
CLN3-240ENST00000631023 FAT4Q6V0I7 4981 aa11.04□□□□□ -0.64
CLN3-240ENST00000631023 LINC00313P59037 77 aa11.03□□□□□ -0.64
CLN3-240ENST00000631023 DSCR10P59022 87 aa11.03□□□□□ -0.64
CLN3-240ENST00000631023 ATP11AUNQ6ZP68 121 aa11.03□□□□□ -0.64
CLN3-240ENST00000631023 MTURNQ8N3F0 131 aa11.02□□□□□ -0.65
CLN3-240ENST00000631023 PCP4L1A6NKN8 68 aa11□□□□□ -0.65
CLN3-240ENST00000631023 J3KT08 172 aa11□□□□□ -0.65
CLN3-240ENST00000631023 C20orf166-AS1Q96NR2 134 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms