RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 FAM218AQ96MZ4 157 aa11.14□□□□□ -0.63
SQSTM1-216ENST00000626660 CLEC2BQ92478 149 aa11.13□□□□□ -0.63
SQSTM1-216ENST00000626660 SCGB1C2P0DMR2 95 aa11.12□□□□□ -0.63
SQSTM1-216ENST00000626660 OCIAD2Q56VL3 154 aa11.12□□□□□ -0.63
SQSTM1-216ENST00000626660 SPAG11AQ6PDA7 123 aa11.12□□□□□ -0.63
SQSTM1-216ENST00000626660 PPDPFLQ8WWR9 84 aa11.11□□□□□ -0.63
SQSTM1-216ENST00000626660 F8WEM9 126 aa11.1□□□□□ -0.63
SQSTM1-216ENST00000626660 SMIM29Q86T20 159 aa11.1□□□□□ -0.63
SQSTM1-216ENST00000626660 DNAL4O96015 105 aa11.09□□□□□ -0.63
SQSTM1-216ENST00000626660 GHRHP01286 108 aa11.09□□□□□ -0.63
SQSTM1-216ENST00000626660 SNHG12Q9BXW3 62 aa11.07□□□□□ -0.64
SQSTM1-216ENST00000626660 SPINK1P00995 79 aa11.04□□□□□ -0.64
SQSTM1-216ENST00000626660 NAA38Q9BRA0 125 aaKnown RBP11.04□□□□□ -0.64
SQSTM1-216ENST00000626660 H3BQ85 93 aa11.02□□□□□ -0.65
SQSTM1-216ENST00000626660 LST1O00453 97 aa11.02□□□□□ -0.65
SQSTM1-216ENST00000626660 TRACP01848 142 aa11.02□□□□□ -0.65
SQSTM1-216ENST00000626660 LYRM7Q5U5X0 104 aa11.02□□□□□ -0.65
SQSTM1-216ENST00000626660 FABP2P12104 132 aa11.01□□□□□ -0.65
SQSTM1-216ENST00000626660 ORMDL1Q9P0S3 153 aa11.01□□□□□ -0.65
SQSTM1-216ENST00000626660 H3BUT2 72 aa10.98□□□□□ -0.65
SQSTM1-216ENST00000626660 RPS29P62273 56 aaKnown RBP10.98□□□□□ -0.65
SQSTM1-216ENST00000626660 Q6JHZ5 121 aa10.98□□□□□ -0.65
SQSTM1-216ENST00000626660 IGLV8-61A0A075B6I0 122 aa10.97□□□□□ -0.65
SQSTM1-216ENST00000626660 PCP4L1A6NKN8 68 aa10.97□□□□□ -0.65
SQSTM1-216ENST00000626660 NDUFV3P56181 108 aaKnown RBP10.97□□□□□ -0.65
SQSTM1-216ENST00000626660 ATXN8Q156A1 80 aa10.97□□□□□ -0.65
SQSTM1-216ENST00000626660 C9orf118A6NHY6 69 aa10.96□□□□□ -0.65
SQSTM1-216ENST00000626660 CD164Q04900 197 aa10.96□□□□□ -0.65
SQSTM1-216ENST00000626660 HRCT1Q6UXD1 115 aa10.96□□□□□ -0.65
SQSTM1-216ENST00000626660 TMEM256-PLSCR3K7ERE1 68 aa10.95□□□□□ -0.66
SQSTM1-216ENST00000626660 TAX1BP3O14907 124 aa10.95□□□□□ -0.66
SQSTM1-216ENST00000626660 PRR4Q16378 134 aa10.95□□□□□ -0.66
SQSTM1-216ENST00000626660 TCL1BO95988 128 aa10.94□□□□□ -0.66
SQSTM1-216ENST00000626660 LIMD2Q9BT23 127 aa10.93□□□□□ -0.66
SQSTM1-216ENST00000626660 TRBV20-1A0A075B6N2 111 aa10.92□□□□□ -0.66
SQSTM1-216ENST00000626660 A0A0G2JQZ4 141 aa10.92□□□□□ -0.66
SQSTM1-216ENST00000626660 COL5A1-AS1Q5SY13 56 aa10.92□□□□□ -0.66
SQSTM1-216ENST00000626660 RETNLBQ9BQ08 111 aa10.92□□□□□ -0.66
SQSTM1-216ENST00000626660 H3BMG7 143 aa10.91□□□□□ -0.66
SQSTM1-216ENST00000626660 IGFL1Q6UW32 110 aa10.91□□□□□ -0.66
SQSTM1-216ENST00000626660 A0A1W2PPM0 123 aa10.89□□□□□ -0.67
SQSTM1-216ENST00000626660 BAALC-AS2P0C853 105 aa10.88□□□□□ -0.67
SQSTM1-216ENST00000626660 UBE2V1Q13404 147 aa10.88□□□□□ -0.67
SQSTM1-216ENST00000626660 FP248Q71RG6 208 aaPredicted RBP10.85□□□□□ -0.67
SQSTM1-216ENST00000626660 ANKRD29Q8N6D5 301 aa10.84□□□□□ -0.67
SQSTM1-216ENST00000626660 A0A1B0GV72 72 aa10.83□□□□□ -0.68
SQSTM1-216ENST00000626660 IGLV7-46A0A075B6I9 117 aa10.82□□□□□ -0.68
SQSTM1-216ENST00000626660 Q5XG85 94 aa10.82□□□□□ -0.68
SQSTM1-216ENST00000626660 RNF213Q63HN8 5207 aa10.81□□□□□ -0.68
SQSTM1-216ENST00000626660 TRBV7-7A0A0K0K1E9 115 aa10.81□□□□□ -0.68
SQSTM1-216ENST00000626660 C9JAW5 83 aa10.81□□□□□ -0.68
SQSTM1-216ENST00000626660 Q6Q795 121 aa10.79□□□□□ -0.68
SQSTM1-216ENST00000626660 TEN1Q86WV5 123 aa10.79□□□□□ -0.68
SQSTM1-216ENST00000626660 RBM3P98179 157 aaKnown RBP10.78□□□□□ -0.68
SQSTM1-216ENST00000626660 SPCS1Q9Y6A9 102 aa10.78□□□□□ -0.68
SQSTM1-216ENST00000626660 DSCR8Q96T75 97 aa10.75□□□□□ -0.69
SQSTM1-216ENST00000626660 LRP2P98164 4655 aa10.74□□□□□ -0.69
SQSTM1-216ENST00000626660 SS18L2Q9UHA2 77 aa10.74□□□□□ -0.69
SQSTM1-216ENST00000626660 JMJD7-PLA2G4BH0Y9G9 81 aa10.73□□□□□ -0.69
SQSTM1-216ENST00000626660 H3BT86 120 aa10.73□□□□□ -0.69
SQSTM1-216ENST00000626660 TRBV7-4A0A0J9YYF1 115 aa10.72□□□□□ -0.69
SQSTM1-216ENST00000626660 A0A1W2PNM2 257 aa10.72□□□□□ -0.69
SQSTM1-216ENST00000626660 TPRXLQ17RH7 258 aa10.72□□□□□ -0.69
SQSTM1-216ENST00000626660 CCKP06307 115 aa10.71□□□□□ -0.69
SQSTM1-216ENST00000626660 ASB16-AS1Q495Z4 193 aa10.71□□□□□ -0.69
SQSTM1-216ENST00000626660 C1orf195Q5TG92 126 aa10.71□□□□□ -0.69
SQSTM1-216ENST00000626660 A0A087WSZ3 146 aa10.7□□□□□ -0.7
SQSTM1-216ENST00000626660 MTURNQ8N3F0 131 aa10.69□□□□□ -0.7
SQSTM1-216ENST00000626660 K7EP34 96 aa10.68□□□□□ -0.7
SQSTM1-216ENST00000626660 VPS25Q9BRG1 176 aa10.68□□□□□ -0.7
SQSTM1-216ENST00000626660 CDIP1Q9H305 208 aa10.67□□□□□ -0.7
SQSTM1-216ENST00000626660 PDE6GP18545 87 aa10.65□□□□□ -0.7
SQSTM1-216ENST00000626660 KRTAP13-3Q3SY46 172 aa10.65□□□□□ -0.7
SQSTM1-216ENST00000626660 GTF2H5Q6ZYL4 71 aa10.65□□□□□ -0.7
SQSTM1-216ENST00000626660 LPAP08519 4548 aa10.63□□□□□ -0.71
SQSTM1-216ENST00000626660 LOC110117498A0A087WWA1 95 aa10.63□□□□□ -0.71
SQSTM1-216ENST00000626660 C14orf132Q9NPU4 83 aa10.63□□□□□ -0.71
SQSTM1-216ENST00000626660 OBSCN-AS1Q96MR7 158 aa10.62□□□□□ -0.71
SQSTM1-216ENST00000626660 C21orf62-AS1Q17RA5 79 aa10.61□□□□□ -0.71
SQSTM1-216ENST00000626660 Q6ZQT0 140 aa10.61□□□□□ -0.71
SQSTM1-216ENST00000626660 SMCPP49901 116 aaPredicted RBP10.56□□□□□ -0.72
SQSTM1-216ENST00000626660 PRO0461Q9UI25 63 aa10.56□□□□□ -0.72
SQSTM1-216ENST00000626660 A0A1B0GW54 56 aa10.55□□□□□ -0.72
SQSTM1-216ENST00000626660 C9orf92A6NGG3 77 aa10.54□□□□□ -0.72
SQSTM1-216ENST00000626660 Q96NJ1 140 aa10.53□□□□□ -0.72
SQSTM1-216ENST00000626660 SIGMAR1Q99720 223 aa10.51□□□□□ -0.73
SQSTM1-216ENST00000626660 F8W1H4 67 aa10.5□□□□□ -0.73
SQSTM1-216ENST00000626660 IGKV4-1P06312 121 aa10.49□□□□□ -0.73
SQSTM1-216ENST00000626660 XP32Q5T750 250 aa10.48□□□□□ -0.73
SQSTM1-216ENST00000626660 LINC00472Q9H8W2 130 aa10.48□□□□□ -0.73
SQSTM1-216ENST00000626660 DEFB116Q30KQ4 102 aa10.45□□□□□ -0.74
SQSTM1-216ENST00000626660 J3KT08 172 aa10.42□□□□□ -0.74
SQSTM1-216ENST00000626660 A0A0U1RQV1 116 aa10.41□□□□□ -0.74
SQSTM1-216ENST00000626660 SEC61BP60468 96 aaKnown RBP10.41□□□□□ -0.74
SQSTM1-216ENST00000626660 NREPQ16612 68 aa10.41□□□□□ -0.74
SQSTM1-216ENST00000626660 ETDBQ3ZM63 59 aa10.39□□□□□ -0.75
SQSTM1-216ENST00000626660 A0A1B0GV90 55 aa10.36□□□□□ -0.75
SQSTM1-216ENST00000626660 IGHV6-1A0A0B4J1U7 121 aa10.34□□□□□ -0.75
SQSTM1-216ENST00000626660 NDUFB1O75438 58 aa10.34□□□□□ -0.75
SQSTM1-216ENST00000626660 DSCR10P59022 87 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms