RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 CAMK2N1Q7Z7J9 78 aa3.18□□□□□ -1.9
VPS13D-213ENST00000613099 HIVEP1P15822 2718 aa3.18□□□□□ -1.9
VPS13D-213ENST00000613099 LINC00612Q8N6U2 182 aa3.18□□□□□ -1.9
VPS13D-213ENST00000613099 FRYLO94915 3013 aa3.17□□□□□ -1.9
VPS13D-213ENST00000613099 KRTAP25-1Q3LHN0 102 aa3.17□□□□□ -1.9
VPS13D-213ENST00000613099 TENM3Q9P273 2699 aa3.17□□□□□ -1.9
VPS13D-213ENST00000613099 APLNQ9ULZ1 77 aa3.17□□□□□ -1.9
VPS13D-213ENST00000613099 C19orf73Q9NVV2 129 aa3.16□□□□□ -1.9
VPS13D-213ENST00000613099 DNAH12Q6ZR08 3092 aa3.15□□□□□ -1.9
VPS13D-213ENST00000613099 A0A0C4DFX4 3053 aa3.15□□□□□ -1.9
VPS13D-213ENST00000613099 A0A0G2JQZ4 141 aa3.15□□□□□ -1.91
VPS13D-213ENST00000613099 A0A1W2PNN7 141 aa3.15□□□□□ -1.91
VPS13D-213ENST00000613099 KALRNO60229 2985 aa3.14□□□□□ -1.91
VPS13D-213ENST00000613099 PSORS1C2Q9UIG4 136 aa3.14□□□□□ -1.91
VPS13D-213ENST00000613099 WWC2-AS2Q96NR7 200 aa3.13□□□□□ -1.91
VPS13D-213ENST00000613099 INAFM1C9JVW0 142 aa3.13□□□□□ -1.91
VPS13D-213ENST00000613099 PCNTO95613 3336 aa3.12□□□□□ -1.91
VPS13D-213ENST00000613099 FAM168BA1KXE4 195 aa3.12□□□□□ -1.91
VPS13D-213ENST00000613099 Q6ZR54 194 aa3.12□□□□□ -1.91
VPS13D-213ENST00000613099 LINC00472Q9H8W2 130 aa3.12□□□□□ -1.91
VPS13D-213ENST00000613099 NDUFAF8A1L188 74 aa3.12□□□□□ -1.91
VPS13D-213ENST00000613099 C5orf42Q9H799 3197 aa3.11□□□□□ -1.91
VPS13D-213ENST00000613099 KRTAP29-1A8MX34 341 aaPredicted RBP3.1□□□□□ -1.91
VPS13D-213ENST00000613099 NBEAQ8NFP9 2946 aa3.1□□□□□ -1.91
VPS13D-213ENST00000613099 HTTP42858 3142 aa3.1□□□□□ -1.91
VPS13D-213ENST00000613099 ADM2Q7Z4H4 148 aa3.1□□□□□ -1.91
VPS13D-213ENST00000613099 RTL8CO15255 209 aa3.1□□□□□ -1.91
VPS13D-213ENST00000613099 MXRA5Q9NR99 2828 aa3.1□□□□□ -1.91
VPS13D-213ENST00000613099 MMP24-AS1A0A0U1RRL7 71 aa3.09□□□□□ -1.91
VPS13D-213ENST00000613099 CSNK1G2-AS1Q8NCQ2 148 aa3.09□□□□□ -1.91
VPS13D-213ENST00000613099 NF1P21359 2839 aa3.09□□□□□ -1.91
VPS13D-213ENST00000613099 A8MU10 97 aa3.09□□□□□ -1.91
VPS13D-213ENST00000613099 A0A0D9SG42 100 aa3.09□□□□□ -1.91
VPS13D-213ENST00000613099 APCP25054 2843 aa3.09□□□□□ -1.92
VPS13D-213ENST00000613099 MGAQ8IWI9 3026 aa3.08□□□□□ -1.92
VPS13D-213ENST00000613099 GIG44P09565 113 aaPredicted RBP3.08□□□□□ -1.92
VPS13D-213ENST00000613099 Q96NJ1 140 aa3.08□□□□□ -1.92
VPS13D-213ENST00000613099 C20orf166-AS1Q96NR2 134 aa3.07□□□□□ -1.92
VPS13D-213ENST00000613099 TENM1Q9UKZ4 2725 aa3.07□□□□□ -1.92
VPS13D-213ENST00000613099 LINC00483Q53H64 154 aa3.07□□□□□ -1.92
VPS13D-213ENST00000613099 IGLV5-52A0A0A0MRZ9 124 aa3.07□□□□□ -1.92
VPS13D-213ENST00000613099 SPRR1BP22528 89 aa3.06□□□□□ -1.92
VPS13D-213ENST00000613099 NBEAL2Q6ZNJ1 2754 aa3.06□□□□□ -1.92
VPS13D-213ENST00000613099 SPRR1AP35321 89 aa3.06□□□□□ -1.92
VPS13D-213ENST00000613099 Q8N1X5 172 aa3.06□□□□□ -1.92
VPS13D-213ENST00000613099 LAMA2P24043 3122 aaKnown RBP3.06□□□□□ -1.92
VPS13D-213ENST00000613099 RPL37P61927 97 aaKnown RBP3.05□□□□□ -1.92
VPS13D-213ENST00000613099 NBDYA0A0U1RRE5 68 aa3.05□□□□□ -1.92
VPS13D-213ENST00000613099 H1FX-AS1Q4G0G2 97 aa3.05□□□□□ -1.92
VPS13D-213ENST00000613099 ZNF861PO60384 105 aa3.04□□□□□ -1.92
VPS13D-213ENST00000613099 FREM2Q5SZK8 3169 aa3.04□□□□□ -1.92
VPS13D-213ENST00000613099 TENM4Q6N022 2769 aa3.04□□□□□ -1.92
VPS13D-213ENST00000613099 CHD7Q9P2D1 2997 aa3.04□□□□□ -1.92
VPS13D-213ENST00000613099 PANO1I0J062 215 aa3.03□□□□□ -1.92
VPS13D-213ENST00000613099 Q8NDZ9 215 aa3.03□□□□□ -1.92
VPS13D-213ENST00000613099 PLAC8Q9NZF1 115 aa3.03□□□□□ -1.92
VPS13D-213ENST00000613099 Q5W150 140 aa3.03□□□□□ -1.92
VPS13D-213ENST00000613099 A8MUU9 505 aa3.02□□□□□ -1.93
VPS13D-213ENST00000613099 ZZEF1O43149 2961 aa3.02□□□□□ -1.93
VPS13D-213ENST00000613099 ASH1LQ9NR48 2969 aaKnown RBP3.02□□□□□ -1.93
VPS13D-213ENST00000613099 CASC10Q5T4H9 136 aa3.01□□□□□ -1.93
VPS13D-213ENST00000613099 KRTAP11-1Q8IUC1 163 aa3.01□□□□□ -1.93
VPS13D-213ENST00000613099 A0A1W2PPR1 153 aa3□□□□□ -1.93
VPS13D-213ENST00000613099 CFAP54Q96N23 3096 aa3□□□□□ -1.93
VPS13D-213ENST00000613099 ANAPC11Q9NYG5 84 aa3□□□□□ -1.93
VPS13D-213ENST00000613099 RANBP2P49792 3224 aaKnown RBP3□□□□□ -1.93
VPS13D-213ENST00000613099 KRTAP26-1Q6PEX3 210 aa2.98□□□□□ -1.93
VPS13D-213ENST00000613099 FRYQ5TBA9 3013 aa2.98□□□□□ -1.93
VPS13D-213ENST00000613099 TYMSOSQ8TAI1 123 aa2.97□□□□□ -1.93
VPS13D-213ENST00000613099 LINC00304Q8N9R0 145 aa2.97□□□□□ -1.93
VPS13D-213ENST00000613099 KRTAP10-9P60411 292 aa2.96□□□□□ -1.93
VPS13D-213ENST00000613099 LRBAP50851 2863 aa2.96□□□□□ -1.93
VPS13D-213ENST00000613099 VWFP04275 2813 aa2.96□□□□□ -1.94
VPS13D-213ENST00000613099 SMR3AQ99954 134 aa2.96□□□□□ -1.94
VPS13D-213ENST00000613099 TACC2O95359 2948 aa2.95□□□□□ -1.94
VPS13D-213ENST00000613099 PLAC4Q8WY50 150 aa2.95□□□□□ -1.94
VPS13D-213ENST00000613099 PDZD2O15018 2839 aa2.94□□□□□ -1.94
VPS13D-213ENST00000613099 KRTAP4-16G5E9R7 235 aaPredicted RBP2.94□□□□□ -1.94
VPS13D-213ENST00000613099 USP34Q70CQ2 3546 aa2.94□□□□□ -1.94
VPS13D-213ENST00000613099 PP632Q6XCG6 107 aa2.93□□□□□ -1.94
VPS13D-213ENST00000613099 K7EIL1 84 aa2.93□□□□□ -1.94
VPS13D-213ENST00000613099 M0QZ58 72 aa2.92□□□□□ -1.94
VPS13D-213ENST00000613099 TGP01266 2768 aa2.92□□□□□ -1.94
VPS13D-213ENST00000613099 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.92□□□□□ -1.94
VPS13D-213ENST00000613099 DCHS2Q6V1P9 2916 aa2.92□□□□□ -1.94
VPS13D-213ENST00000613099 CELSR2Q9HCU4 2923 aa2.92□□□□□ -1.94
VPS13D-213ENST00000613099 XIRP2A4UGR9 3374 aa2.92□□□□□ -1.94
VPS13D-213ENST00000613099 UNC80Q8N2C7 3258 aa2.92□□□□□ -1.94
VPS13D-213ENST00000613099 LAMA3Q16787 3333 aa2.91□□□□□ -1.94
VPS13D-213ENST00000613099 C9orf92A6NGG3 77 aa2.91□□□□□ -1.94
VPS13D-213ENST00000613099 COL12A1Q99715 3063 aa2.91□□□□□ -1.94
VPS13D-213ENST00000613099 BRCA2P51587 3418 aa2.91□□□□□ -1.94
VPS13D-213ENST00000613099 KRTAP19-4Q3LI73 84 aa2.9□□□□□ -1.94
VPS13D-213ENST00000613099 ZANQ9Y493 2812 aa2.89□□□□□ -1.95
VPS13D-213ENST00000613099 REV3LO60673 3130 aa2.89□□□□□ -1.95
VPS13D-213ENST00000613099 MKI67P46013 3256 aaKnown RBP2.89□□□□□ -1.95
VPS13D-213ENST00000613099 CDH23Q9H251 3354 aa2.89□□□□□ -1.95
VPS13D-213ENST00000613099 TRIOO75962 3097 aa2.88□□□□□ -1.95
VPS13D-213ENST00000613099 SZT2Q5T011 3432 aa2.87□□□□□ -1.95
VPS13D-213ENST00000613099 CRYBG3Q68DQ2 2970 aa2.87□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms