RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SPAG11AQ6PDA7 123 aa11.22□□□□□ -0.61
UPF1-209ENST00000600310 COX6CP09669 75 aa11.21□□□□□ -0.61
UPF1-209ENST00000600310 C4orf48Q5BLP8 95 aa11.18□□□□□ -0.62
UPF1-209ENST00000600310 PPDPFLQ8WWR9 84 aa11.18□□□□□ -0.62
UPF1-209ENST00000600310 CLEC2BQ92478 149 aa11.18□□□□□ -0.62
UPF1-209ENST00000600310 BATFQ16520 125 aa11.16□□□□□ -0.62
UPF1-209ENST00000600310 OCIAD2Q56VL3 154 aa11.16□□□□□ -0.62
UPF1-209ENST00000600310 SPINK1P00995 79 aa11.14□□□□□ -0.63
UPF1-209ENST00000600310 SCGB1C2P0DMR2 95 aa11.14□□□□□ -0.63
UPF1-209ENST00000600310 F8WEM9 126 aa11.11□□□□□ -0.63
UPF1-209ENST00000600310 GHRHP01286 108 aa11.11□□□□□ -0.63
UPF1-209ENST00000600310 SNHG12Q9BXW3 62 aa11.11□□□□□ -0.63
UPF1-209ENST00000600310 DNAL4O96015 105 aa11.09□□□□□ -0.63
UPF1-209ENST00000600310 RPS29P62273 56 aaKnown RBP11.09□□□□□ -0.63
UPF1-209ENST00000600310 NAA38Q9BRA0 125 aaKnown RBP11.09□□□□□ -0.63
UPF1-209ENST00000600310 IGLV8-61A0A075B6I0 122 aa11.08□□□□□ -0.64
UPF1-209ENST00000600310 TRACP01848 142 aa11.08□□□□□ -0.64
UPF1-209ENST00000600310 LST1O00453 97 aa11.07□□□□□ -0.64
UPF1-209ENST00000600310 CD164Q04900 197 aa11.06□□□□□ -0.64
UPF1-209ENST00000600310 ORMDL1Q9P0S3 153 aa11.06□□□□□ -0.64
UPF1-209ENST00000600310 H3BQ85 93 aa11.05□□□□□ -0.64
UPF1-209ENST00000600310 FABP2P12104 132 aa11.04□□□□□ -0.64
UPF1-209ENST00000600310 NDUFV3P56181 108 aaKnown RBP11.04□□□□□ -0.64
UPF1-209ENST00000600310 Q6JHZ5 121 aa11.04□□□□□ -0.64
UPF1-209ENST00000600310 A0A0G2JQZ4 141 aa11.03□□□□□ -0.64
UPF1-209ENST00000600310 HRCT1Q6UXD1 115 aa11.03□□□□□ -0.64
UPF1-209ENST00000600310 TAX1BP3O14907 124 aa11.02□□□□□ -0.65
UPF1-209ENST00000600310 PRR4Q16378 134 aa11.02□□□□□ -0.65
UPF1-209ENST00000600310 RETNLBQ9BQ08 111 aa11.02□□□□□ -0.65
UPF1-209ENST00000600310 C9orf118A6NHY6 69 aa11.01□□□□□ -0.65
UPF1-209ENST00000600310 H3BUT2 72 aa11.01□□□□□ -0.65
UPF1-209ENST00000600310 TMEM256-PLSCR3K7ERE1 68 aa11.01□□□□□ -0.65
UPF1-209ENST00000600310 TCL1BO95988 128 aa11.01□□□□□ -0.65
UPF1-209ENST00000600310 LYRM7Q5U5X0 104 aa11.01□□□□□ -0.65
UPF1-209ENST00000600310 ATXN8Q156A1 80 aa11□□□□□ -0.65
UPF1-209ENST00000600310 IGFL1Q6UW32 110 aa11□□□□□ -0.65
UPF1-209ENST00000600310 H3BMG7 143 aa10.97□□□□□ -0.65
UPF1-209ENST00000600310 LIMD2Q9BT23 127 aa10.97□□□□□ -0.65
UPF1-209ENST00000600310 TRBV20-1A0A075B6N2 111 aa10.96□□□□□ -0.65
UPF1-209ENST00000600310 PCP4L1A6NKN8 68 aa10.96□□□□□ -0.65
UPF1-209ENST00000600310 UBE2V1Q13404 147 aa10.96□□□□□ -0.65
UPF1-209ENST00000600310 Q5XG85 94 aa10.95□□□□□ -0.66
UPF1-209ENST00000600310 LRP2P98164 4655 aa10.94□□□□□ -0.66
UPF1-209ENST00000600310 COL5A1-AS1Q5SY13 56 aa10.94□□□□□ -0.66
UPF1-209ENST00000600310 FP248Q71RG6 208 aaPredicted RBP10.94□□□□□ -0.66
UPF1-209ENST00000600310 A0A1W2PPM0 123 aa10.93□□□□□ -0.66
UPF1-209ENST00000600310 BAALC-AS2P0C853 105 aa10.93□□□□□ -0.66
UPF1-209ENST00000600310 IGLV7-46A0A075B6I9 117 aa10.92□□□□□ -0.66
UPF1-209ENST00000600310 TRBV7-7A0A0K0K1E9 115 aa10.9□□□□□ -0.66
UPF1-209ENST00000600310 Q6Q795 121 aa10.88□□□□□ -0.67
UPF1-209ENST00000600310 ANKRD29Q8N6D5 301 aa10.88□□□□□ -0.67
UPF1-209ENST00000600310 RNF213Q63HN8 5207 aa10.87□□□□□ -0.67
UPF1-209ENST00000600310 TEN1Q86WV5 123 aa10.86□□□□□ -0.67
UPF1-209ENST00000600310 A0A1B0GV72 72 aa10.85□□□□□ -0.67
UPF1-209ENST00000600310 C9JAW5 83 aa10.85□□□□□ -0.67
UPF1-209ENST00000600310 TPRXLQ17RH7 258 aa10.84□□□□□ -0.67
UPF1-209ENST00000600310 A0A1W2PNM2 257 aa10.82□□□□□ -0.68
UPF1-209ENST00000600310 RBM3P98179 157 aaKnown RBP10.82□□□□□ -0.68
UPF1-209ENST00000600310 ASB16-AS1Q495Z4 193 aa10.82□□□□□ -0.68
UPF1-209ENST00000600310 C1orf195Q5TG92 126 aa10.82□□□□□ -0.68
UPF1-209ENST00000600310 SPCS1Q9Y6A9 102 aa10.82□□□□□ -0.68
UPF1-209ENST00000600310 TRBV7-4A0A0J9YYF1 115 aa10.8□□□□□ -0.68
UPF1-209ENST00000600310 JMJD7-PLA2G4BH0Y9G9 81 aa10.78□□□□□ -0.68
UPF1-209ENST00000600310 DSCR8Q96T75 97 aa10.78□□□□□ -0.68
UPF1-209ENST00000600310 H3BT86 120 aa10.77□□□□□ -0.69
UPF1-209ENST00000600310 KRTAP13-3Q3SY46 172 aa10.77□□□□□ -0.69
UPF1-209ENST00000600310 SS18L2Q9UHA2 77 aa10.77□□□□□ -0.69
UPF1-209ENST00000600310 A0A087WSZ3 146 aa10.76□□□□□ -0.69
UPF1-209ENST00000600310 CCKP06307 115 aa10.76□□□□□ -0.69
UPF1-209ENST00000600310 LPAP08519 4548 aa10.76□□□□□ -0.69
UPF1-209ENST00000600310 MTURNQ8N3F0 131 aa10.74□□□□□ -0.69
UPF1-209ENST00000600310 CDIP1Q9H305 208 aa10.74□□□□□ -0.69
UPF1-209ENST00000600310 OBSCN-AS1Q96MR7 158 aa10.73□□□□□ -0.69
UPF1-209ENST00000600310 K7EP34 96 aa10.72□□□□□ -0.69
UPF1-209ENST00000600310 LOC110117498A0A087WWA1 95 aa10.7□□□□□ -0.7
UPF1-209ENST00000600310 PDE6GP18545 87 aa10.69□□□□□ -0.7
UPF1-209ENST00000600310 VPS25Q9BRG1 176 aa10.69□□□□□ -0.7
UPF1-209ENST00000600310 Q6ZQT0 140 aa10.68□□□□□ -0.7
UPF1-209ENST00000600310 C14orf132Q9NPU4 83 aa10.67□□□□□ -0.7
UPF1-209ENST00000600310 SMCPP49901 116 aaPredicted RBP10.66□□□□□ -0.7
UPF1-209ENST00000600310 GTF2H5Q6ZYL4 71 aa10.65□□□□□ -0.7
UPF1-209ENST00000600310 PRO0461Q9UI25 63 aa10.65□□□□□ -0.7
UPF1-209ENST00000600310 Q96NJ1 140 aa10.64□□□□□ -0.71
UPF1-209ENST00000600310 C21orf62-AS1Q17RA5 79 aa10.63□□□□□ -0.71
UPF1-209ENST00000600310 A0A1B0GW54 56 aa10.61□□□□□ -0.71
UPF1-209ENST00000600310 C9orf92A6NGG3 77 aa10.61□□□□□ -0.71
UPF1-209ENST00000600310 XP32Q5T750 250 aa10.59□□□□□ -0.71
UPF1-209ENST00000600310 LINC00472Q9H8W2 130 aa10.59□□□□□ -0.71
UPF1-209ENST00000600310 F8W1H4 67 aa10.54□□□□□ -0.72
UPF1-209ENST00000600310 IGKV4-1P06312 121 aa10.54□□□□□ -0.72
UPF1-209ENST00000600310 SIGMAR1Q99720 223 aa10.53□□□□□ -0.72
UPF1-209ENST00000600310 DEFB116Q30KQ4 102 aa10.52□□□□□ -0.73
UPF1-209ENST00000600310 SEC61BP60468 96 aaKnown RBP10.49□□□□□ -0.73
UPF1-209ENST00000600310 J3KT08 172 aa10.47□□□□□ -0.73
UPF1-209ENST00000600310 NREPQ16612 68 aa10.44□□□□□ -0.74
UPF1-209ENST00000600310 MUC17Q685J3 4493 aa10.43□□□□□ -0.74
UPF1-209ENST00000600310 RPL37P61927 97 aaKnown RBP10.43□□□□□ -0.74
UPF1-209ENST00000600310 ETDBQ3ZM63 59 aa10.43□□□□□ -0.74
UPF1-209ENST00000600310 MUC2Q02817 5179 aa10.41□□□□□ -0.74
UPF1-209ENST00000600310 DSCR10P59022 87 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms