RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 C9orf153Q5TBE3 101 aa10.53□□□□□ -0.72
LIG1-216ENST00000598938 SNCGO76070 127 aa10.52□□□□□ -0.73
LIG1-216ENST00000598938 COX6CP09669 75 aa10.51□□□□□ -0.73
LIG1-216ENST00000598938 SPAG11AQ6PDA7 123 aa10.5□□□□□ -0.73
LIG1-216ENST00000598938 PPDPFLQ8WWR9 84 aa10.5□□□□□ -0.73
LIG1-216ENST00000598938 CLEC2BQ92478 149 aa10.5□□□□□ -0.73
LIG1-216ENST00000598938 OCIAD2Q56VL3 154 aa10.48□□□□□ -0.73
LIG1-216ENST00000598938 BATFQ16520 125 aa10.47□□□□□ -0.73
LIG1-216ENST00000598938 C4orf48Q5BLP8 95 aa10.47□□□□□ -0.73
LIG1-216ENST00000598938 SPINK1P00995 79 aa10.44□□□□□ -0.74
LIG1-216ENST00000598938 SCGB1C2P0DMR2 95 aa10.44□□□□□ -0.74
LIG1-216ENST00000598938 LPAP08519 4548 aa10.44□□□□□ -0.74
LIG1-216ENST00000598938 F8WEM9 126 aa10.42□□□□□ -0.74
LIG1-216ENST00000598938 LST1O00453 97 aa10.42□□□□□ -0.74
LIG1-216ENST00000598938 NAA38Q9BRA0 125 aaKnown RBP10.42□□□□□ -0.74
LIG1-216ENST00000598938 DNAL4O96015 105 aa10.41□□□□□ -0.74
LIG1-216ENST00000598938 RPS29P62273 56 aaKnown RBP10.41□□□□□ -0.74
LIG1-216ENST00000598938 SNHG12Q9BXW3 62 aa10.41□□□□□ -0.74
LIG1-216ENST00000598938 IGLV8-61A0A075B6I0 122 aa10.4□□□□□ -0.74
LIG1-216ENST00000598938 A0A0U1RQV1 116 aa10.4□□□□□ -0.74
LIG1-216ENST00000598938 GHRHP01286 108 aa10.4□□□□□ -0.74
LIG1-216ENST00000598938 TRACP01848 142 aa10.4□□□□□ -0.74
LIG1-216ENST00000598938 KRTAP9-2Q9BYQ4 174 aa10.38□□□□□ -0.75
LIG1-216ENST00000598938 ORMDL1Q9P0S3 153 aa10.38□□□□□ -0.75
LIG1-216ENST00000598938 CD164Q04900 197 aa10.37□□□□□ -0.75
LIG1-216ENST00000598938 A0A0G2JQZ4 141 aa10.36□□□□□ -0.75
LIG1-216ENST00000598938 H3BQ85 93 aa10.36□□□□□ -0.75
LIG1-216ENST00000598938 TAX1BP3O14907 124 aa10.36□□□□□ -0.75
LIG1-216ENST00000598938 NDUFV3P56181 108 aaKnown RBP10.36□□□□□ -0.75
LIG1-216ENST00000598938 Q6JHZ5 121 aa10.36□□□□□ -0.75
LIG1-216ENST00000598938 FABP2P12104 132 aa10.35□□□□□ -0.75
LIG1-216ENST00000598938 MUC2Q02817 5179 aa10.34□□□□□ -0.75
LIG1-216ENST00000598938 C9orf118A6NHY6 69 aa10.34□□□□□ -0.75
LIG1-216ENST00000598938 H3BUT2 72 aa10.34□□□□□ -0.75
LIG1-216ENST00000598938 TCL1BO95988 128 aa10.34□□□□□ -0.75
LIG1-216ENST00000598938 PRR4Q16378 134 aa10.34□□□□□ -0.75
LIG1-216ENST00000598938 HRCT1Q6UXD1 115 aa10.34□□□□□ -0.75
LIG1-216ENST00000598938 RETNLBQ9BQ08 111 aa10.34□□□□□ -0.75
LIG1-216ENST00000598938 LYRM7Q5U5X0 104 aa10.33□□□□□ -0.76
LIG1-216ENST00000598938 IGFL1Q6UW32 110 aa10.33□□□□□ -0.76
LIG1-216ENST00000598938 TMEM256-PLSCR3K7ERE1 68 aa10.32□□□□□ -0.76
LIG1-216ENST00000598938 ATXN8Q156A1 80 aa10.32□□□□□ -0.76
LIG1-216ENST00000598938 PCP4L1A6NKN8 68 aa10.3□□□□□ -0.76
LIG1-216ENST00000598938 LIMD2Q9BT23 127 aa10.3□□□□□ -0.76
LIG1-216ENST00000598938 H3BMG7 143 aa10.29□□□□□ -0.76
LIG1-216ENST00000598938 TRBV20-1A0A075B6N2 111 aa10.28□□□□□ -0.76
LIG1-216ENST00000598938 A0A1W2PPM0 123 aa10.28□□□□□ -0.76
LIG1-216ENST00000598938 UBE2V1Q13404 147 aa10.28□□□□□ -0.76
LIG1-216ENST00000598938 COL5A1-AS1Q5SY13 56 aa10.28□□□□□ -0.76
LIG1-216ENST00000598938 Q5XG85 94 aa10.27□□□□□ -0.77
LIG1-216ENST00000598938 FP248Q71RG6 208 aaPredicted RBP10.26□□□□□ -0.77
LIG1-216ENST00000598938 BAALC-AS2P0C853 105 aa10.25□□□□□ -0.77
LIG1-216ENST00000598938 IGLV7-46A0A075B6I9 117 aa10.23□□□□□ -0.77
LIG1-216ENST00000598938 TRBV7-7A0A0K0K1E9 115 aa10.22□□□□□ -0.77
LIG1-216ENST00000598938 Q6Q795 121 aa10.22□□□□□ -0.77
LIG1-216ENST00000598938 LCE2AQ5TA79 106 aaPredicted RBP10.21□□□□□ -0.77
LIG1-216ENST00000598938 ANKRD29Q8N6D5 301 aa10.21□□□□□ -0.77
LIG1-216ENST00000598938 FAT4Q6V0I7 4981 aa10.21□□□□□ -0.78
LIG1-216ENST00000598938 A0A1B0GV72 72 aa10.2□□□□□ -0.78
LIG1-216ENST00000598938 KRTAP9-6A0A140TA67 174 aa10.19□□□□□ -0.78
LIG1-216ENST00000598938 TEN1Q86WV5 123 aa10.19□□□□□ -0.78
LIG1-216ENST00000598938 C9JAW5 83 aa10.18□□□□□ -0.78
LIG1-216ENST00000598938 TPRXLQ17RH7 258 aa10.18□□□□□ -0.78
LIG1-216ENST00000598938 A0A1W2PNM2 257 aa10.16□□□□□ -0.78
LIG1-216ENST00000598938 ASB16-AS1Q495Z4 193 aa10.16□□□□□ -0.78
LIG1-216ENST00000598938 C1orf195Q5TG92 126 aa10.16□□□□□ -0.78
LIG1-216ENST00000598938 TRBV7-4A0A0J9YYF1 115 aa10.15□□□□□ -0.78
LIG1-216ENST00000598938 RBM3P98179 157 aaKnown RBP10.15□□□□□ -0.78
LIG1-216ENST00000598938 SPCS1Q9Y6A9 102 aa10.15□□□□□ -0.78
LIG1-216ENST00000598938 KRTAP13-3Q3SY46 172 aa10.12□□□□□ -0.79
LIG1-216ENST00000598938 JMJD7-PLA2G4BH0Y9G9 81 aa10.11□□□□□ -0.79
LIG1-216ENST00000598938 H3BT86 120 aa10.11□□□□□ -0.79
LIG1-216ENST00000598938 DSCR8Q96T75 97 aa10.11□□□□□ -0.79
LIG1-216ENST00000598938 SS18L2Q9UHA2 77 aa10.11□□□□□ -0.79
LIG1-216ENST00000598938 A0A087WSZ3 146 aa10.1□□□□□ -0.79
LIG1-216ENST00000598938 CCKP06307 115 aa10.1□□□□□ -0.79
LIG1-216ENST00000598938 MTURNQ8N3F0 131 aa10.08□□□□□ -0.8
LIG1-216ENST00000598938 OBSCN-AS1Q96MR7 158 aa10.08□□□□□ -0.8
LIG1-216ENST00000598938 K7EP34 96 aa10.07□□□□□ -0.8
LIG1-216ENST00000598938 CDIP1Q9H305 208 aa10.06□□□□□ -0.8
LIG1-216ENST00000598938 LOC110117498A0A087WWA1 95 aa10.05□□□□□ -0.8
LIG1-216ENST00000598938 Q6ZQT0 140 aa10.04□□□□□ -0.8
LIG1-216ENST00000598938 VPS25Q9BRG1 176 aa10.03□□□□□ -0.8
LIG1-216ENST00000598938 PDE6GP18545 87 aa10.02□□□□□ -0.81
LIG1-216ENST00000598938 C14orf132Q9NPU4 83 aa10.02□□□□□ -0.81
LIG1-216ENST00000598938 SMCPP49901 116 aaPredicted RBP10.01□□□□□ -0.81
LIG1-216ENST00000598938 Q96NJ1 140 aa10.01□□□□□ -0.81
LIG1-216ENST00000598938 PRO0461Q9UI25 63 aa10.01□□□□□ -0.81
LIG1-216ENST00000598938 MUC17Q685J3 4493 aa10□□□□□ -0.81
LIG1-216ENST00000598938 GTF2H5Q6ZYL4 71 aa9.99□□□□□ -0.81
LIG1-216ENST00000598938 C21orf62-AS1Q17RA5 79 aa9.98□□□□□ -0.81
LIG1-216ENST00000598938 A0A1B0GW54 56 aa9.96□□□□□ -0.82
LIG1-216ENST00000598938 C9orf92A6NGG3 77 aa9.96□□□□□ -0.82
LIG1-216ENST00000598938 XP32Q5T750 250 aa9.95□□□□□ -0.82
LIG1-216ENST00000598938 LINC00472Q9H8W2 130 aa9.94□□□□□ -0.82
LIG1-216ENST00000598938 F8W1H4 67 aa9.89□□□□□ -0.83
LIG1-216ENST00000598938 IGKV4-1P06312 121 aa9.89□□□□□ -0.83
LIG1-216ENST00000598938 SIGMAR1Q99720 223 aa9.89□□□□□ -0.83
LIG1-216ENST00000598938 DEFB116Q30KQ4 102 aa9.87□□□□□ -0.83
LIG1-216ENST00000598938 SEC61BP60468 96 aaKnown RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms