RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SPINK1P00995 79 aa8.08□□□□□ -1.12
SHKBP1-217ENST00000598558 H0YGX0 51 aa8.06□□□□□ -1.12
SHKBP1-217ENST00000598558 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.06□□□□□ -1.12
SHKBP1-217ENST00000598558 HRCT1Q6UXD1 115 aa8.05□□□□□ -1.12
SHKBP1-217ENST00000598558 CLEC2BQ92478 149 aa8.04□□□□□ -1.12
SHKBP1-217ENST00000598558 RPS29P62273 56 aaKnown RBP8.01□□□□□ -1.13
SHKBP1-217ENST00000598558 IGLV7-46A0A075B6I9 117 aa8□□□□□ -1.13
SHKBP1-217ENST00000598558 IGLV8-61A0A075B6I0 122 aa7.99□□□□□ -1.13
SHKBP1-217ENST00000598558 PSMB2P49721 201 aa7.99□□□□□ -1.13
SHKBP1-217ENST00000598558 A0A1B0GX51 115 aa7.98□□□□□ -1.13
SHKBP1-217ENST00000598558 OCIAD2Q56VL3 154 aa7.98□□□□□ -1.13
SHKBP1-217ENST00000598558 CD164Q04900 197 aa7.97□□□□□ -1.13
SHKBP1-217ENST00000598558 PPDPFLQ8WWR9 84 aa7.97□□□□□ -1.13
SHKBP1-217ENST00000598558 TSTD3H0UI37 97 aa7.96□□□□□ -1.14
SHKBP1-217ENST00000598558 H3BUT2 72 aa7.96□□□□□ -1.14
SHKBP1-217ENST00000598558 M0R143 59 aa7.96□□□□□ -1.14
SHKBP1-217ENST00000598558 IGFL1Q6UW32 110 aa7.96□□□□□ -1.14
SHKBP1-217ENST00000598558 NAA38Q9BRA0 125 aaKnown RBP7.96□□□□□ -1.14
SHKBP1-217ENST00000598558 SNHG12Q9BXW3 62 aa7.96□□□□□ -1.14
SHKBP1-217ENST00000598558 FP248Q71RG6 208 aaPredicted RBP7.95□□□□□ -1.14
SHKBP1-217ENST00000598558 F8WEM9 126 aa7.94□□□□□ -1.14
SHKBP1-217ENST00000598558 SNCGO76070 127 aa7.93□□□□□ -1.14
SHKBP1-217ENST00000598558 COX6CP09669 75 aa7.93□□□□□ -1.14
SHKBP1-217ENST00000598558 NDUFV3P56181 108 aaKnown RBP7.93□□□□□ -1.14
SHKBP1-217ENST00000598558 TPRXLQ17RH7 258 aa7.93□□□□□ -1.14
SHKBP1-217ENST00000598558 FABP2P12104 132 aa7.92□□□□□ -1.14
SHKBP1-217ENST00000598558 KRTAP13-3Q3SY46 172 aa7.92□□□□□ -1.14
SHKBP1-217ENST00000598558 LST1O00453 97 aa7.91□□□□□ -1.14
SHKBP1-217ENST00000598558 SCGB1C2P0DMR2 95 aa7.91□□□□□ -1.14
SHKBP1-217ENST00000598558 Q5XG85 94 aa7.91□□□□□ -1.14
SHKBP1-217ENST00000598558 Q6JHZ5 121 aa7.91□□□□□ -1.14
SHKBP1-217ENST00000598558 RNF213Q63HN8 5207 aa7.9□□□□□ -1.14
SHKBP1-217ENST00000598558 BATFQ16520 125 aa7.9□□□□□ -1.14
SHKBP1-217ENST00000598558 LIMD2Q9BT23 127 aa7.9□□□□□ -1.14
SHKBP1-217ENST00000598558 C1orf195Q5TG92 126 aa7.89□□□□□ -1.15
SHKBP1-217ENST00000598558 H3BMG7 143 aa7.88□□□□□ -1.15
SHKBP1-217ENST00000598558 TRACP01848 142 aa7.88□□□□□ -1.15
SHKBP1-217ENST00000598558 ORMDL1Q9P0S3 153 aa7.88□□□□□ -1.15
SHKBP1-217ENST00000598558 TRBV7-7A0A0K0K1E9 115 aa7.87□□□□□ -1.15
SHKBP1-217ENST00000598558 DNAL4O96015 105 aa7.87□□□□□ -1.15
SHKBP1-217ENST00000598558 CDIP1Q9H305 208 aa7.87□□□□□ -1.15
SHKBP1-217ENST00000598558 TCL1BO95988 128 aa7.86□□□□□ -1.15
SHKBP1-217ENST00000598558 A0A1B0GV72 72 aa7.85□□□□□ -1.15
SHKBP1-217ENST00000598558 MUC17Q685J3 4493 aa7.85□□□□□ -1.15
SHKBP1-217ENST00000598558 TAX1BP3O14907 124 aa7.84□□□□□ -1.15
SHKBP1-217ENST00000598558 A0A1W2PNM2 257 aa7.83□□□□□ -1.16
SHKBP1-217ENST00000598558 TMEM256-PLSCR3K7ERE1 68 aa7.83□□□□□ -1.16
SHKBP1-217ENST00000598558 GHRHP01286 108 aa7.83□□□□□ -1.16
SHKBP1-217ENST00000598558 Q6Q795 121 aa7.82□□□□□ -1.16
SHKBP1-217ENST00000598558 BAALC-AS2P0C853 105 aa7.81□□□□□ -1.16
SHKBP1-217ENST00000598558 UBE2V1Q13404 147 aa7.81□□□□□ -1.16
SHKBP1-217ENST00000598558 ASB16-AS1Q495Z4 193 aa7.81□□□□□ -1.16
SHKBP1-217ENST00000598558 H3BQ85 93 aa7.8□□□□□ -1.16
SHKBP1-217ENST00000598558 TEN1Q86WV5 123 aa7.8□□□□□ -1.16
SHKBP1-217ENST00000598558 C9orf118A6NHY6 69 aa7.79□□□□□ -1.16
SHKBP1-217ENST00000598558 ATXN8Q156A1 80 aa7.79□□□□□ -1.16
SHKBP1-217ENST00000598558 C9orf92A6NGG3 77 aa7.78□□□□□ -1.16
SHKBP1-217ENST00000598558 XP32Q5T750 250 aa7.78□□□□□ -1.16
SHKBP1-217ENST00000598558 ANKRD29Q8N6D5 301 aa7.78□□□□□ -1.16
SHKBP1-217ENST00000598558 A0A087WSZ3 146 aa7.77□□□□□ -1.17
SHKBP1-217ENST00000598558 MUC2Q02817 5179 aa7.77□□□□□ -1.17
SHKBP1-217ENST00000598558 TRBV7-4A0A0J9YYF1 115 aa7.75□□□□□ -1.17
SHKBP1-217ENST00000598558 A0A1W2PPM0 123 aa7.75□□□□□ -1.17
SHKBP1-217ENST00000598558 Q96NJ1 140 aa7.74□□□□□ -1.17
SHKBP1-217ENST00000598558 TRBV20-1A0A075B6N2 111 aa7.73□□□□□ -1.17
SHKBP1-217ENST00000598558 KRTAP4-1Q9BYQ7 146 aa7.73□□□□□ -1.17
SHKBP1-217ENST00000598558 C9JAW5 83 aa7.72□□□□□ -1.17
SHKBP1-217ENST00000598558 RBM3P98179 157 aaKnown RBP7.72□□□□□ -1.17
SHKBP1-217ENST00000598558 CCKP06307 115 aa7.71□□□□□ -1.18
SHKBP1-217ENST00000598558 LYRM7Q5U5X0 104 aa7.71□□□□□ -1.18
SHKBP1-217ENST00000598558 PCP4L1A6NKN8 68 aa7.7□□□□□ -1.18
SHKBP1-217ENST00000598558 MTURNQ8N3F0 131 aa7.69□□□□□ -1.18
SHKBP1-217ENST00000598558 SS18L2Q9UHA2 77 aa7.69□□□□□ -1.18
SHKBP1-217ENST00000598558 COL5A1-AS1Q5SY13 56 aa7.67□□□□□ -1.18
SHKBP1-217ENST00000598558 DSCR8Q96T75 97 aa7.67□□□□□ -1.18
SHKBP1-217ENST00000598558 VPS25Q9BRG1 176 aa7.67□□□□□ -1.18
SHKBP1-217ENST00000598558 OBSCN-AS1Q96MR7 158 aa7.66□□□□□ -1.18
SHKBP1-217ENST00000598558 SEC61BP60468 96 aaKnown RBP7.65□□□□□ -1.18
SHKBP1-217ENST00000598558 DEFB116Q30KQ4 102 aa7.65□□□□□ -1.18
SHKBP1-217ENST00000598558 Q6ZQT0 140 aa7.65□□□□□ -1.18
SHKBP1-217ENST00000598558 LINC00472Q9H8W2 130 aa7.65□□□□□ -1.18
SHKBP1-217ENST00000598558 C14orf132Q9NPU4 83 aa7.64□□□□□ -1.19
SHKBP1-217ENST00000598558 SPCS1Q9Y6A9 102 aa7.64□□□□□ -1.19
SHKBP1-217ENST00000598558 JMJD7-PLA2G4BH0Y9G9 81 aa7.63□□□□□ -1.19
SHKBP1-217ENST00000598558 PCOTHQ58A44 107 aa7.63□□□□□ -1.19
SHKBP1-217ENST00000598558 LOC110117498A0A087WWA1 95 aa7.62□□□□□ -1.19
SHKBP1-217ENST00000598558 SMCPP49901 116 aaPredicted RBP7.62□□□□□ -1.19
SHKBP1-217ENST00000598558 H3BT86 120 aa7.61□□□□□ -1.19
SHKBP1-217ENST00000598558 IGKV4-1P06312 121 aa7.6□□□□□ -1.19
SHKBP1-217ENST00000598558 RPL37P61927 97 aaKnown RBP7.6□□□□□ -1.19
SHKBP1-217ENST00000598558 PRO0461Q9UI25 63 aa7.59□□□□□ -1.19
SHKBP1-217ENST00000598558 DSCR10P59022 87 aa7.58□□□□□ -1.2
SHKBP1-217ENST00000598558 NOTCH2NLQ7Z3S9 236 aa7.58□□□□□ -1.2
SHKBP1-217ENST00000598558 SIGMAR1Q99720 223 aa7.58□□□□□ -1.2
SHKBP1-217ENST00000598558 FAT4Q6V0I7 4981 aa7.56□□□□□ -1.2
SHKBP1-217ENST00000598558 K7EP34 96 aa7.56□□□□□ -1.2
SHKBP1-217ENST00000598558 PDE6GP18545 87 aa7.55□□□□□ -1.2
SHKBP1-217ENST00000598558 KRTAP16-1A8MUX0 517 aa7.52□□□□□ -1.21
SHKBP1-217ENST00000598558 Q75L30 129 aa7.52□□□□□ -1.21
SHKBP1-217ENST00000598558 A8MUU9 505 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms