RNA–Protein interactions for RNA: ENST00000598020.3

PNKP-211, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 534 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-211ENST00000598020 PPDPFLQ8WWR9 84 aa11.72□□□□□ -0.53
PNKP-211ENST00000598020 SPINK1P00995 79 aa11.71□□□□□ -0.53
PNKP-211ENST00000598020 COX6CP09669 75 aa11.7□□□□□ -0.54
PNKP-211ENST00000598020 PSMB2P49721 201 aa11.7□□□□□ -0.54
PNKP-211ENST00000598020 OCIAD2Q56VL3 154 aa11.7□□□□□ -0.54
PNKP-211ENST00000598020 RPS29P62273 56 aaKnown RBP11.68□□□□□ -0.54
PNKP-211ENST00000598020 CLEC2BQ92478 149 aa11.65□□□□□ -0.54
PNKP-211ENST00000598020 GHRHP01286 108 aa11.63□□□□□ -0.55
PNKP-211ENST00000598020 IGLV8-61A0A075B6I0 122 aa11.62□□□□□ -0.55
PNKP-211ENST00000598020 F8WEM9 126 aa11.62□□□□□ -0.55
PNKP-211ENST00000598020 CD164Q04900 197 aa11.62□□□□□ -0.55
PNKP-211ENST00000598020 SNHG12Q9BXW3 62 aa11.61□□□□□ -0.55
PNKP-211ENST00000598020 SCGB1C2P0DMR2 95 aa11.59□□□□□ -0.55
PNKP-211ENST00000598020 PRR4Q16378 134 aa11.59□□□□□ -0.55
PNKP-211ENST00000598020 H3BQ85 93 aa11.57□□□□□ -0.56
PNKP-211ENST00000598020 DNAL4O96015 105 aa11.57□□□□□ -0.56
PNKP-211ENST00000598020 TRACP01848 142 aa11.57□□□□□ -0.56
PNKP-211ENST00000598020 Q6JHZ5 121 aa11.57□□□□□ -0.56
PNKP-211ENST00000598020 LST1O00453 97 aa11.56□□□□□ -0.56
PNKP-211ENST00000598020 RETNLBQ9BQ08 111 aa11.56□□□□□ -0.56
PNKP-211ENST00000598020 BATFQ16520 125 aa11.55□□□□□ -0.56
PNKP-211ENST00000598020 ORMDL1Q9P0S3 153 aa11.54□□□□□ -0.56
PNKP-211ENST00000598020 NDUFV3P56181 108 aaKnown RBP11.53□□□□□ -0.56
PNKP-211ENST00000598020 A0A0G2JQZ4 141 aa11.52□□□□□ -0.57
PNKP-211ENST00000598020 Q5XG85 94 aa11.52□□□□□ -0.57
PNKP-211ENST00000598020 HRCT1Q6UXD1 115 aa11.52□□□□□ -0.57
PNKP-211ENST00000598020 FP248Q71RG6 208 aaPredicted RBP11.52□□□□□ -0.57
PNKP-211ENST00000598020 LIMD2Q9BT23 127 aa11.52□□□□□ -0.57
PNKP-211ENST00000598020 FABP2P12104 132 aa11.51□□□□□ -0.57
PNKP-211ENST00000598020 IGFL1Q6UW32 110 aa11.51□□□□□ -0.57
PNKP-211ENST00000598020 TMEM256-PLSCR3K7ERE1 68 aa11.5□□□□□ -0.57
PNKP-211ENST00000598020 NAA38Q9BRA0 125 aaKnown RBP11.5□□□□□ -0.57
PNKP-211ENST00000598020 LRP2P98164 4655 aa11.49□□□□□ -0.57
PNKP-211ENST00000598020 IGLV7-46A0A075B6I9 117 aa11.48□□□□□ -0.57
PNKP-211ENST00000598020 H3BUT2 72 aa11.48□□□□□ -0.57
PNKP-211ENST00000598020 LYRM7Q5U5X0 104 aa11.47□□□□□ -0.57
PNKP-211ENST00000598020 H3BMG7 143 aa11.46□□□□□ -0.57
PNKP-211ENST00000598020 TAX1BP3O14907 124 aa11.46□□□□□ -0.57
PNKP-211ENST00000598020 TCL1BO95988 128 aa11.46□□□□□ -0.57
PNKP-211ENST00000598020 ATXN8Q156A1 80 aa11.46□□□□□ -0.57
PNKP-211ENST00000598020 C9orf118A6NHY6 69 aa11.45□□□□□ -0.58
PNKP-211ENST00000598020 UBE2V1Q13404 147 aa11.45□□□□□ -0.58
PNKP-211ENST00000598020 TRBV20-1A0A075B6N2 111 aa11.43□□□□□ -0.58
PNKP-211ENST00000598020 TPRXLQ17RH7 258 aa11.43□□□□□ -0.58
PNKP-211ENST00000598020 LPAP08519 4548 aa11.43□□□□□ -0.58
PNKP-211ENST00000598020 TRBV7-7A0A0K0K1E9 115 aa11.42□□□□□ -0.58
PNKP-211ENST00000598020 Q6Q795 121 aa11.42□□□□□ -0.58
PNKP-211ENST00000598020 BAALC-AS2P0C853 105 aa11.39□□□□□ -0.59
PNKP-211ENST00000598020 TEN1Q86WV5 123 aa11.38□□□□□ -0.59
PNKP-211ENST00000598020 UBR4Q5T4S7 5183 aa11.37□□□□□ -0.59
PNKP-211ENST00000598020 A0A1W2PPM0 123 aa11.37□□□□□ -0.59
PNKP-211ENST00000598020 ASB16-AS1Q495Z4 193 aa11.37□□□□□ -0.59
PNKP-211ENST00000598020 COL5A1-AS1Q5SY13 56 aa11.36□□□□□ -0.59
PNKP-211ENST00000598020 KRTAP13-3Q3SY46 172 aa11.35□□□□□ -0.59
PNKP-211ENST00000598020 C1orf195Q5TG92 126 aa11.35□□□□□ -0.59
PNKP-211ENST00000598020 ANKRD29Q8N6D5 301 aa11.35□□□□□ -0.59
PNKP-211ENST00000598020 A0A1W2PNM2 257 aa11.31□□□□□ -0.6
PNKP-211ENST00000598020 PCP4L1A6NKN8 68 aa11.31□□□□□ -0.6
PNKP-211ENST00000598020 RBM3P98179 157 aaKnown RBP11.31□□□□□ -0.6
PNKP-211ENST00000598020 TRBV7-4A0A0J9YYF1 115 aa11.3□□□□□ -0.6
PNKP-211ENST00000598020 CDIP1Q9H305 208 aa11.3□□□□□ -0.6
PNKP-211ENST00000598020 SS18L2Q9UHA2 77 aa11.29□□□□□ -0.6
PNKP-211ENST00000598020 A0A1B0GV72 72 aa11.28□□□□□ -0.6
PNKP-211ENST00000598020 C9JAW5 83 aa11.28□□□□□ -0.6
PNKP-211ENST00000598020 A0A087WSZ3 146 aa11.25□□□□□ -0.61
PNKP-211ENST00000598020 JMJD7-PLA2G4BH0Y9G9 81 aa11.25□□□□□ -0.61
PNKP-211ENST00000598020 DSCR8Q96T75 97 aa11.25□□□□□ -0.61
PNKP-211ENST00000598020 CCKP06307 115 aa11.24□□□□□ -0.61
PNKP-211ENST00000598020 SPCS1Q9Y6A9 102 aa11.23□□□□□ -0.61
PNKP-211ENST00000598020 H3BT86 120 aa11.22□□□□□ -0.61
PNKP-211ENST00000598020 OBSCN-AS1Q96MR7 158 aa11.2□□□□□ -0.62
PNKP-211ENST00000598020 LOC110117498A0A087WWA1 95 aa11.18□□□□□ -0.62
PNKP-211ENST00000598020 PDE6GP18545 87 aa11.17□□□□□ -0.62
PNKP-211ENST00000598020 C21orf62-AS1Q17RA5 79 aa11.15□□□□□ -0.62
PNKP-211ENST00000598020 XP32Q5T750 250 aa11.15□□□□□ -0.62
PNKP-211ENST00000598020 Q6ZQT0 140 aa11.15□□□□□ -0.62
PNKP-211ENST00000598020 Q96NJ1 140 aa11.15□□□□□ -0.62
PNKP-211ENST00000598020 K7EP34 96 aa11.14□□□□□ -0.63
PNKP-211ENST00000598020 VPS25Q9BRG1 176 aa11.14□□□□□ -0.63
PNKP-211ENST00000598020 A0A1B0GW54 56 aa11.13□□□□□ -0.63
PNKP-211ENST00000598020 MTURNQ8N3F0 131 aa11.13□□□□□ -0.63
PNKP-211ENST00000598020 C9orf92A6NGG3 77 aa11.12□□□□□ -0.63
PNKP-211ENST00000598020 C14orf132Q9NPU4 83 aa11.11□□□□□ -0.63
PNKP-211ENST00000598020 LINC00472Q9H8W2 130 aa11.09□□□□□ -0.63
PNKP-211ENST00000598020 MUC17Q685J3 4493 aa11.09□□□□□ -0.63
PNKP-211ENST00000598020 RNF213Q63HN8 5207 aa11.09□□□□□ -0.63
PNKP-211ENST00000598020 SMCPP49901 116 aaPredicted RBP11.08□□□□□ -0.64
PNKP-211ENST00000598020 PRO0461Q9UI25 63 aa11.08□□□□□ -0.64
PNKP-211ENST00000598020 GTF2H5Q6ZYL4 71 aa11.06□□□□□ -0.64
PNKP-211ENST00000598020 SEC61BP60468 96 aaKnown RBP11.04□□□□□ -0.64
PNKP-211ENST00000598020 IGKV4-1P06312 121 aa11.02□□□□□ -0.65
PNKP-211ENST00000598020 SIGMAR1Q99720 223 aa11□□□□□ -0.65
PNKP-211ENST00000598020 DEFB116Q30KQ4 102 aa10.97□□□□□ -0.65
PNKP-211ENST00000598020 F8W1H4 67 aa10.96□□□□□ -0.65
PNKP-211ENST00000598020 J3KT08 172 aa10.96□□□□□ -0.65
PNKP-211ENST00000598020 RPL37P61927 97 aaKnown RBP10.95□□□□□ -0.66
PNKP-211ENST00000598020 MUC2Q02817 5179 aa10.93□□□□□ -0.66
PNKP-211ENST00000598020 Q75L30 129 aa10.9□□□□□ -0.66
PNKP-211ENST00000598020 LINC00313P59037 77 aa10.89□□□□□ -0.67
PNKP-211ENST00000598020 NREPQ16612 68 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms