RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 VAMP3Q15836 100 aa5.95□□□□□ -1.46
VPS4B-202ENST00000588059 HRCT1Q6UXD1 115 aa5.95□□□□□ -1.46
VPS4B-202ENST00000588059 C14orf144Q96I85 54 aa5.95□□□□□ -1.46
VPS4B-202ENST00000588059 NHP2Q9NX24 153 aaKnown RBP5.95□□□□□ -1.46
VPS4B-202ENST00000588059 PAM16Q9Y3D7 125 aa5.95□□□□□ -1.46
VPS4B-202ENST00000588059 C9orf92A6NGG3 77 aa5.94□□□□□ -1.46
VPS4B-202ENST00000588059 SPATA45Q537H7 98 aa5.94□□□□□ -1.46
VPS4B-202ENST00000588059 SSPOA2VEC9 5147 aa5.94□□□□□ -1.46
VPS4B-202ENST00000588059 DLEU1O43261 78 aa5.93□□□□□ -1.46
VPS4B-202ENST00000588059 VAMP8Q9BV40 100 aa5.93□□□□□ -1.46
VPS4B-202ENST00000588059 COX6B2Q6YFQ2 88 aa5.92□□□□□ -1.46
VPS4B-202ENST00000588059 PRO1933Q9H354 126 aa5.92□□□□□ -1.46
VPS4B-202ENST00000588059 IGLV5-48A0A075B6I7 105 aa5.91□□□□□ -1.46
VPS4B-202ENST00000588059 SMIM29Q86T20 159 aa5.91□□□□□ -1.46
VPS4B-202ENST00000588059 USH2AO75445 5202 aa5.91□□□□□ -1.46
VPS4B-202ENST00000588059 H7C2G1 150 aa5.9□□□□□ -1.46
VPS4B-202ENST00000588059 LINC00575Q6W349 94 aa5.9□□□□□ -1.46
VPS4B-202ENST00000588059 LIMD2Q9BT23 127 aa5.9□□□□□ -1.46
VPS4B-202ENST00000588059 hADV29S1A0JD25 119 aa5.89□□□□□ -1.47
VPS4B-202ENST00000588059 RAB37Q96AX2 223 aa5.89□□□□□ -1.47
VPS4B-202ENST00000588059 Q6ZQY7 126 aa5.88□□□□□ -1.47
VPS4B-202ENST00000588059 HIGD1BQ9P298 99 aa5.88□□□□□ -1.47
VPS4B-202ENST00000588059 TMA7Q9Y2S6 64 aaKnown RBP5.88□□□□□ -1.47
VPS4B-202ENST00000588059 A0A0G2JQZ4 141 aa5.87□□□□□ -1.47
VPS4B-202ENST00000588059 F8WEM9 126 aa5.87□□□□□ -1.47
VPS4B-202ENST00000588059 CFC1P0CG37 223 aa5.87□□□□□ -1.47
VPS4B-202ENST00000588059 CD164Q04900 197 aa5.87□□□□□ -1.47
VPS4B-202ENST00000588059 BVES-AS1Q5T3Y7 98 aa5.87□□□□□ -1.47
VPS4B-202ENST00000588059 C2orf91Q6ZV80 131 aa5.87□□□□□ -1.47
VPS4B-202ENST00000588059 FCGBPQ9Y6R7 5405 aaPredicted RBP5.84□□□□□ -1.47
VPS4B-202ENST00000588059 A0A0B4J2C4 111 aa5.84□□□□□ -1.47
VPS4B-202ENST00000588059 RPL37P61927 97 aaKnown RBP5.84□□□□□ -1.47
VPS4B-202ENST00000588059 PYY3Q5JQD4 70 aa5.84□□□□□ -1.47
VPS4B-202ENST00000588059 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.84□□□□□ -1.47
VPS4B-202ENST00000588059 CEND1Q8N111 149 aa5.84□□□□□ -1.47
VPS4B-202ENST00000588059 TMEM238LA0A1B0GVL6 79 aa5.83□□□□□ -1.48
VPS4B-202ENST00000588059 A6NJY4 79 aa5.83□□□□□ -1.48
VPS4B-202ENST00000588059 SNCGO76070 127 aa5.82□□□□□ -1.48
VPS4B-202ENST00000588059 SNHG12Q9BXW3 62 aa5.82□□□□□ -1.48
VPS4B-202ENST00000588059 H0YGX0 51 aa5.81□□□□□ -1.48
VPS4B-202ENST00000588059 PRO1854Q9UHT4 67 aa5.81□□□□□ -1.48
VPS4B-202ENST00000588059 FXYD2P54710 66 aa5.8□□□□□ -1.48
VPS4B-202ENST00000588059 OCIAD2Q56VL3 154 aa5.8□□□□□ -1.48
VPS4B-202ENST00000588059 Q5XG85 94 aa5.8□□□□□ -1.48
VPS4B-202ENST00000588059 Q6JHZ5 121 aa5.8□□□□□ -1.48
VPS4B-202ENST00000588059 TCL1BO95988 128 aa5.79□□□□□ -1.48
VPS4B-202ENST00000588059 HSD52Q0P140 79 aa5.79□□□□□ -1.48
VPS4B-202ENST00000588059 C1orf195Q5TG92 126 aa5.79□□□□□ -1.48
VPS4B-202ENST00000588059 PPDPFLQ8WWR9 84 aa5.79□□□□□ -1.48
VPS4B-202ENST00000588059 FAM218AQ96MZ4 157 aa5.79□□□□□ -1.48
VPS4B-202ENST00000588059 IGFL1Q6UW32 110 aa5.78□□□□□ -1.48
VPS4B-202ENST00000588059 CLEC2BQ92478 149 aa5.78□□□□□ -1.48
VPS4B-202ENST00000588059 KRTAP9-8Q9BYQ0 159 aa5.78□□□□□ -1.48
VPS4B-202ENST00000588059 H3BUT2 72 aa5.77□□□□□ -1.49
VPS4B-202ENST00000588059 TRBV7-7A0A0K0K1E9 115 aa5.76□□□□□ -1.49
VPS4B-202ENST00000588059 K7ERJ3 54 aa5.76□□□□□ -1.49
VPS4B-202ENST00000588059 PSMB2P49721 201 aa5.76□□□□□ -1.49
VPS4B-202ENST00000588059 UQCR10Q9UDW1 63 aa5.76□□□□□ -1.49
VPS4B-202ENST00000588059 TRIAP1O43715 76 aa5.75□□□□□ -1.49
VPS4B-202ENST00000588059 Q6Q795 121 aa5.75□□□□□ -1.49
VPS4B-202ENST00000588059 A0A1B0GX51 115 aa5.74□□□□□ -1.49
VPS4B-202ENST00000588059 GHRHP01286 108 aa5.74□□□□□ -1.49
VPS4B-202ENST00000588059 FABP2P12104 132 aa5.74□□□□□ -1.49
VPS4B-202ENST00000588059 NDUFV3P56181 108 aaKnown RBP5.74□□□□□ -1.49
VPS4B-202ENST00000588059 KRTAP19-1Q8IUB9 90 aa5.73□□□□□ -1.49
VPS4B-202ENST00000588059 DNAL4O96015 105 aa5.72□□□□□ -1.49
VPS4B-202ENST00000588059 H3BMG7 143 aa5.71□□□□□ -1.5
VPS4B-202ENST00000588059 COX6CP09669 75 aa5.71□□□□□ -1.5
VPS4B-202ENST00000588059 MACF1Q9UPN3 7388 aaKnown RBP5.69□□□□□ -1.5
VPS4B-202ENST00000588059 LST1O00453 97 aa5.69□□□□□ -1.5
VPS4B-202ENST00000588059 ORMDL1Q9P0S3 153 aa5.69□□□□□ -1.5
VPS4B-202ENST00000588059 SYNE2Q8WXH0 6885 aaKnown RBP5.69□□□□□ -1.5
VPS4B-202ENST00000588059 A0A1B0GV72 72 aa5.68□□□□□ -1.5
VPS4B-202ENST00000588059 LCE2BO14633 110 aa5.68□□□□□ -1.5
VPS4B-202ENST00000588059 TEN1Q86WV5 123 aa5.68□□□□□ -1.5
VPS4B-202ENST00000588059 SCGB1C2P0DMR2 95 aa5.67□□□□□ -1.5
VPS4B-202ENST00000588059 SS18L2Q9UHA2 77 aa5.67□□□□□ -1.5
VPS4B-202ENST00000588059 A0A087WSZ3 146 aa5.66□□□□□ -1.5
VPS4B-202ENST00000588059 H3BQ85 93 aa5.66□□□□□ -1.5
VPS4B-202ENST00000588059 MT2AP02795 61 aa5.66□□□□□ -1.5
VPS4B-202ENST00000588059 TMEM256-PLSCR3K7ERE1 68 aa5.65□□□□□ -1.5
VPS4B-202ENST00000588059 ANKRD29Q8N6D5 301 aa5.65□□□□□ -1.5
VPS4B-202ENST00000588059 ATP11AUNQ6ZP68 121 aa5.64□□□□□ -1.51
VPS4B-202ENST00000588059 Q75L30 129 aa5.64□□□□□ -1.51
VPS4B-202ENST00000588059 OBSCN-AS1Q96MR7 158 aa5.64□□□□□ -1.51
VPS4B-202ENST00000588059 A0A1W2PNM2 257 aa5.63□□□□□ -1.51
VPS4B-202ENST00000588059 M0R143 59 aa5.62□□□□□ -1.51
VPS4B-202ENST00000588059 MT1FP04733 61 aa5.62□□□□□ -1.51
VPS4B-202ENST00000588059 SMIM6P0DI80 62 aa5.62□□□□□ -1.51
VPS4B-202ENST00000588059 TRACP01848 142 aa5.61□□□□□ -1.51
VPS4B-202ENST00000588059 UBE2V1Q13404 147 aa5.61□□□□□ -1.51
VPS4B-202ENST00000588059 KRTAP9-3Q9BYQ3 159 aa5.61□□□□□ -1.51
VPS4B-202ENST00000588059 SMCPP49901 116 aaPredicted RBP5.6□□□□□ -1.51
VPS4B-202ENST00000588059 Q96NJ1 140 aa5.6□□□□□ -1.51
VPS4B-202ENST00000588059 TRBV7-4A0A0J9YYF1 115 aa5.59□□□□□ -1.51
VPS4B-202ENST00000588059 CCKP06307 115 aa5.59□□□□□ -1.51
VPS4B-202ENST00000588059 SIGMAR1Q99720 223 aa5.59□□□□□ -1.51
VPS4B-202ENST00000588059 NAA38Q9BRA0 125 aaKnown RBP5.59□□□□□ -1.51
VPS4B-202ENST00000588059 VPS25Q9BRG1 176 aa5.58□□□□□ -1.52
VPS4B-202ENST00000588059 BAALC-AS2P0C853 105 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms