RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 LINC00483Q53H64 154 aa5.07□□□□□ -1.6
NUP88-211ENST00000575976 KRTAP4-8A0A0G2JLE6 195 aa5.06□□□□□ -1.6
NUP88-211ENST00000575976 hADV29S1A0JD25 119 aa5.06□□□□□ -1.6
NUP88-211ENST00000575976 PSMB2P49721 201 aa5.06□□□□□ -1.6
NUP88-211ENST00000575976 SEC61GP60059 68 aa5.06□□□□□ -1.6
NUP88-211ENST00000575976 KRTAP13-2Q52LG2 175 aa5.06□□□□□ -1.6
NUP88-211ENST00000575976 C5orf47Q569G3 176 aa5.06□□□□□ -1.6
NUP88-211ENST00000575976 DEFB105AQ8NG35 78 aa5.06□□□□□ -1.6
NUP88-211ENST00000575976 FAM218AQ96MZ4 157 aa5.06□□□□□ -1.6
NUP88-211ENST00000575976 SPRR1BP22528 89 aa5.05□□□□□ -1.6
NUP88-211ENST00000575976 LINC01547P58512 204 aaPredicted RBP5.05□□□□□ -1.6
NUP88-211ENST00000575976 C3orf22Q8N5N4 141 aa5.05□□□□□ -1.6
NUP88-211ENST00000575976 IGLV5-48A0A075B6I7 105 aa5.04□□□□□ -1.6
NUP88-211ENST00000575976 Q6ZQY7 126 aa5.04□□□□□ -1.6
NUP88-211ENST00000575976 TYMSOSQ8TAI1 123 aa5.04□□□□□ -1.6
NUP88-211ENST00000575976 CLEC2BQ92478 149 aa5.04□□□□□ -1.6
NUP88-211ENST00000575976 KRTAP4-12Q9BQ66 201 aa5.04□□□□□ -1.6
NUP88-211ENST00000575976 TEX49A0A1B0GTD5 131 aa5.03□□□□□ -1.6
NUP88-211ENST00000575976 COX6CP09669 75 aa5.03□□□□□ -1.6
NUP88-211ENST00000575976 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.03□□□□□ -1.6
NUP88-211ENST00000575976 Q8N377 158 aa5.03□□□□□ -1.6
NUP88-211ENST00000575976 NAA38Q9BRA0 125 aaKnown RBP5.03□□□□□ -1.6
NUP88-211ENST00000575976 SNHG12Q9BXW3 62 aa5.03□□□□□ -1.6
NUP88-211ENST00000575976 IGLV9-49A0A0B4J1Y8 123 aa5.02□□□□□ -1.61
NUP88-211ENST00000575976 A0A1B0GX51 115 aa5.02□□□□□ -1.61
NUP88-211ENST00000575976 SCGB1C2P0DMR2 95 aa5.02□□□□□ -1.61
NUP88-211ENST00000575976 SNCGO76070 127 aa5.01□□□□□ -1.61
NUP88-211ENST00000575976 MOBPQ13875 183 aa5.01□□□□□ -1.61
NUP88-211ENST00000575976 SMIM29Q86T20 159 aa5.01□□□□□ -1.61
NUP88-211ENST00000575976 LAMTOR3Q9UHA4 124 aa5.01□□□□□ -1.61
NUP88-211ENST00000575976 TAX1BP3O14907 124 aa5□□□□□ -1.61
NUP88-211ENST00000575976 H3BUT2 72 aa4.99□□□□□ -1.61
NUP88-211ENST00000575976 C9orf153Q5TBE3 101 aa4.99□□□□□ -1.61
NUP88-211ENST00000575976 SSBP3-AS1Q7Z2R9 100 aa4.99□□□□□ -1.61
NUP88-211ENST00000575976 TNXBP22105 4242 aa4.98□□□□□ -1.61
NUP88-211ENST00000575976 C9orf118A6NHY6 69 aa4.98□□□□□ -1.61
NUP88-211ENST00000575976 LST1O00453 97 aa4.98□□□□□ -1.61
NUP88-211ENST00000575976 OCIAD2Q56VL3 154 aa4.98□□□□□ -1.61
NUP88-211ENST00000575976 LINC00304Q8N9R0 145 aa4.98□□□□□ -1.61
NUP88-211ENST00000575976 Q8NBF4 154 aa4.98□□□□□ -1.61
NUP88-211ENST00000575976 LRP2P98164 4655 aa4.97□□□□□ -1.61
NUP88-211ENST00000575976 A0A1B0GV72 72 aa4.97□□□□□ -1.61
NUP88-211ENST00000575976 TCL1BO95988 128 aa4.97□□□□□ -1.61
NUP88-211ENST00000575976 DNAL4O96015 105 aa4.97□□□□□ -1.61
NUP88-211ENST00000575976 TRACP01848 142 aa4.97□□□□□ -1.61
NUP88-211ENST00000575976 PPDPFLQ8WWR9 84 aa4.97□□□□□ -1.61
NUP88-211ENST00000575976 COL5A1-AS1Q5SY13 56 aa4.96□□□□□ -1.62
NUP88-211ENST00000575976 ORMDL1Q9P0S3 153 aa4.96□□□□□ -1.62
NUP88-211ENST00000575976 A0A1W2PPM0 123 aa4.95□□□□□ -1.62
NUP88-211ENST00000575976 F8WEM9 126 aa4.95□□□□□ -1.62
NUP88-211ENST00000575976 FABP2P12104 132 aa4.95□□□□□ -1.62
NUP88-211ENST00000575976 SMCPP49901 116 aaPredicted RBP4.95□□□□□ -1.62
NUP88-211ENST00000575976 ATXN8Q156A1 80 aa4.95□□□□□ -1.62
NUP88-211ENST00000575976 LYRM7Q5U5X0 104 aa4.95□□□□□ -1.62
NUP88-211ENST00000575976 SPAG11AQ6PDA7 123 aa4.95□□□□□ -1.62
NUP88-211ENST00000575976 MTURNQ8N3F0 131 aa4.95□□□□□ -1.62
NUP88-211ENST00000575976 A0A0G2JQZ4 141 aa4.94□□□□□ -1.62
NUP88-211ENST00000575976 NDUFV3P56181 108 aaKnown RBP4.94□□□□□ -1.62
NUP88-211ENST00000575976 IGLV8-61A0A075B6I0 122 aa4.93□□□□□ -1.62
NUP88-211ENST00000575976 TRBV20-1A0A075B6N2 111 aa4.93□□□□□ -1.62
NUP88-211ENST00000575976 H3BQ85 93 aa4.93□□□□□ -1.62
NUP88-211ENST00000575976 TMEM256-PLSCR3K7ERE1 68 aa4.93□□□□□ -1.62
NUP88-211ENST00000575976 SPINK1P00995 79 aa4.92□□□□□ -1.62
NUP88-211ENST00000575976 BAALC-AS2P0C853 105 aa4.92□□□□□ -1.62
NUP88-211ENST00000575976 HRCT1Q6UXD1 115 aa4.92□□□□□ -1.62
NUP88-211ENST00000575976 H3BMG7 143 aa4.91□□□□□ -1.62
NUP88-211ENST00000575976 UBE2V1Q13404 147 aa4.91□□□□□ -1.62
NUP88-211ENST00000575976 IGFL1Q6UW32 110 aa4.91□□□□□ -1.62
NUP88-211ENST00000575976 SPCS1Q9Y6A9 102 aa4.91□□□□□ -1.62
NUP88-211ENST00000575976 C9JAW5 83 aa4.9□□□□□ -1.63
NUP88-211ENST00000575976 Q6JHZ5 121 aa4.9□□□□□ -1.63
NUP88-211ENST00000575976 KRTAP4-7Q9BYR0 210 aa4.9□□□□□ -1.63
NUP88-211ENST00000575976 SCGB1A1P11684 91 aa4.89□□□□□ -1.63
NUP88-211ENST00000575976 RPS29P62273 56 aaKnown RBP4.89□□□□□ -1.63
NUP88-211ENST00000575976 CD164Q04900 197 aa4.89□□□□□ -1.63
NUP88-211ENST00000575976 RETNLBQ9BQ08 111 aa4.89□□□□□ -1.63
NUP88-211ENST00000575976 ANKRD29Q8N6D5 301 aa4.88□□□□□ -1.63
NUP88-211ENST00000575976 K7EP34 96 aa4.86□□□□□ -1.63
NUP88-211ENST00000575976 PRR4Q16378 134 aa4.86□□□□□ -1.63
NUP88-211ENST00000575976 LIMD2Q9BT23 127 aa4.86□□□□□ -1.63
NUP88-211ENST00000575976 V9GYY9 64 aa4.86□□□□□ -1.63
NUP88-211ENST00000575976 TRBV7-7A0A0K0K1E9 115 aa4.85□□□□□ -1.63
NUP88-211ENST00000575976 A0A1W2PNM2 257 aa4.85□□□□□ -1.63
NUP88-211ENST00000575976 H3BT86 120 aa4.85□□□□□ -1.63
NUP88-211ENST00000575976 RBM3P98179 157 aaKnown RBP4.85□□□□□ -1.63
NUP88-211ENST00000575976 FAT4Q6V0I7 4981 aa4.85□□□□□ -1.63
NUP88-211ENST00000575976 TRBV7-4A0A0J9YYF1 115 aa4.84□□□□□ -1.63
NUP88-211ENST00000575976 A0A1B0GV90 55 aa4.84□□□□□ -1.63
NUP88-211ENST00000575976 Q5XG85 94 aa4.84□□□□□ -1.63
NUP88-211ENST00000575976 Q6Q795 121 aa4.84□□□□□ -1.63
NUP88-211ENST00000575976 TEN1Q86WV5 123 aa4.84□□□□□ -1.63
NUP88-211ENST00000575976 KRTAP19-1Q8IUB9 90 aa4.84□□□□□ -1.63
NUP88-211ENST00000575976 A0A0U1RQV1 116 aa4.83□□□□□ -1.64
NUP88-211ENST00000575976 JMJD7-PLA2G4BH0Y9G9 81 aa4.83□□□□□ -1.64
NUP88-211ENST00000575976 DSCR8Q96T75 97 aa4.83□□□□□ -1.64
NUP88-211ENST00000575976 GTF2H5Q6ZYL4 71 aa4.82□□□□□ -1.64
NUP88-211ENST00000575976 OBSCN-AS1Q96MR7 158 aa4.82□□□□□ -1.64
NUP88-211ENST00000575976 PRO0461Q9UI25 63 aa4.82□□□□□ -1.64
NUP88-211ENST00000575976 IGLV7-46A0A075B6I9 117 aa4.81□□□□□ -1.64
NUP88-211ENST00000575976 A0A087WSZ3 146 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms