RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 DNAH12Q6ZR08 3092 aa1.69□□□□□ -2.14
NUP88-208ENST00000574087 UTRNP46939 3433 aa1.69□□□□□ -2.14
NUP88-208ENST00000574087 OTOGLQ3ZCN5 2332 aa1.68□□□□□ -2.14
NUP88-208ENST00000574087 URB1O60287 2271 aaKnown RBP1.68□□□□□ -2.14
NUP88-208ENST00000574087 LELP1Q5T871 98 aa1.68□□□□□ -2.14
NUP88-208ENST00000574087 SPTBN5Q9NRC6 3674 aaKnown RBP1.67□□□□□ -2.14
NUP88-208ENST00000574087 SPRR1BP22528 89 aa1.67□□□□□ -2.14
NUP88-208ENST00000574087 TNRC18O15417 2968 aaPredicted RBP1.67□□□□□ -2.14
NUP88-208ENST00000574087 ZZEF1O43149 2961 aa1.66□□□□□ -2.14
NUP88-208ENST00000574087 DEFB130BP0DP73 79 aa1.66□□□□□ -2.14
NUP88-208ENST00000574087 DEFB130AP0DP74 79 aa1.66□□□□□ -2.14
NUP88-208ENST00000574087 SRCAPQ6ZRS2 3230 aa1.66□□□□□ -2.14
NUP88-208ENST00000574087 UNC79Q9P2D8 2635 aa1.66□□□□□ -2.14
NUP88-208ENST00000574087 MUC6Q6W4X9 2439 aa1.65□□□□□ -2.15
NUP88-208ENST00000574087 PDE4DIPQ5VU43 2346 aa1.65□□□□□ -2.15
NUP88-208ENST00000574087 PTPRQQ9UMZ3 2332 aa1.65□□□□□ -2.15
NUP88-208ENST00000574087 DEFB136Q30KP8 78 aa1.65□□□□□ -2.15
NUP88-208ENST00000574087 MGAQ8IWI9 3026 aa1.65□□□□□ -2.15
NUP88-208ENST00000574087 ASXL3Q9C0F0 2248 aa1.64□□□□□ -2.15
NUP88-208ENST00000574087 SZT2Q5T011 3432 aa1.64□□□□□ -2.15
NUP88-208ENST00000574087 A0A096LPF7 62 aa1.64□□□□□ -2.15
NUP88-208ENST00000574087 CRIPTQ9P021 101 aa1.64□□□□□ -2.15
NUP88-208ENST00000574087 CRCT1Q9UGL9 99 aa1.64□□□□□ -2.15
NUP88-208ENST00000574087 AHCTF1Q8WYP5 2266 aa1.64□□□□□ -2.15
NUP88-208ENST00000574087 USP34Q70CQ2 3546 aa1.63□□□□□ -2.15
NUP88-208ENST00000574087 CNOT1A5YKK6 2376 aaKnown RBP1.63□□□□□ -2.15
NUP88-208ENST00000574087 COX6B2Q6YFQ2 88 aa1.63□□□□□ -2.15
NUP88-208ENST00000574087 CFAP54Q96N23 3096 aa1.63□□□□□ -2.15
NUP88-208ENST00000574087 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.63□□□□□ -2.15
NUP88-208ENST00000574087 CNTRLQ7Z7A1 2325 aa1.63□□□□□ -2.15
NUP88-208ENST00000574087 H0YAA0 97 aa1.62□□□□□ -2.15
NUP88-208ENST00000574087 RPL37P61927 97 aaKnown RBP1.62□□□□□ -2.15
NUP88-208ENST00000574087 Q6ZSA8 131 aa1.62□□□□□ -2.15
NUP88-208ENST00000574087 UNC80Q8N2C7 3258 aa1.61□□□□□ -2.15
NUP88-208ENST00000574087 H3BNG1 76 aa1.61□□□□□ -2.15
NUP88-208ENST00000574087 SPART-AS1P0CW21 52 aa1.61□□□□□ -2.15
NUP88-208ENST00000574087 H1FX-AS1Q4G0G2 97 aa1.61□□□□□ -2.15
NUP88-208ENST00000574087 CHD7Q9P2D1 2997 aa1.61□□□□□ -2.15
NUP88-208ENST00000574087 FRYLO94915 3013 aa1.6□□□□□ -2.15
NUP88-208ENST00000574087 DEFB123Q8N688 67 aa1.6□□□□□ -2.15
NUP88-208ENST00000574087 CACNA1EQ15878 2313 aa1.59□□□□□ -2.15
NUP88-208ENST00000574087 NBEAQ8NFP9 2946 aa1.59□□□□□ -2.16
NUP88-208ENST00000574087 DOPEY2Q9Y3R5 2298 aa1.59□□□□□ -2.16
NUP88-208ENST00000574087 KALRNO60229 2985 aa1.59□□□□□ -2.16
NUP88-208ENST00000574087 RANBP2P49792 3224 aaKnown RBP1.59□□□□□ -2.16
NUP88-208ENST00000574087 DNAH14Q0VDD8 3507 aa1.58□□□□□ -2.16
NUP88-208ENST00000574087 K7EIL1 84 aa1.58□□□□□ -2.16
NUP88-208ENST00000574087 LINC01556Q5JQF7 62 aa1.58□□□□□ -2.16
NUP88-208ENST00000574087 UBE2DNLQ8IWF7 75 aa1.58□□□□□ -2.16
NUP88-208ENST00000574087 FRYQ5TBA9 3013 aa1.58□□□□□ -2.16
NUP88-208ENST00000574087 PRLHP81277 87 aa1.57□□□□□ -2.16
NUP88-208ENST00000574087 WDFY4Q6ZS81 3184 aa1.56□□□□□ -2.16
NUP88-208ENST00000574087 AKAP13Q12802 2813 aa1.56□□□□□ -2.16
NUP88-208ENST00000574087 DMDP11532 3685 aa1.56□□□□□ -2.16
NUP88-208ENST00000574087 A0A096LNI7 61 aa1.56□□□□□ -2.16
NUP88-208ENST00000574087 HTN3P15516 51 aa1.56□□□□□ -2.16
NUP88-208ENST00000574087 CFAP47Q6ZTR5 3102 aa1.56□□□□□ -2.16
NUP88-208ENST00000574087 CHD6Q8TD26 2715 aa1.56□□□□□ -2.16
NUP88-208ENST00000574087 MKI67P46013 3256 aaKnown RBP1.56□□□□□ -2.16
NUP88-208ENST00000574087 SPENQ96T58 3664 aaKnown RBP1.55□□□□□ -2.16
NUP88-208ENST00000574087 VPS13AQ96RL7 3174 aa1.55□□□□□ -2.16
NUP88-208ENST00000574087 SPINK1P00995 79 aa1.55□□□□□ -2.16
NUP88-208ENST00000574087 KRTAP21-3Q3LHN1 58 aa1.55□□□□□ -2.16
NUP88-208ENST00000574087 AKAP9Q99996 3911 aa1.55□□□□□ -2.16
NUP88-208ENST00000574087 PRUNE2Q8WUY3 3088 aa1.55□□□□□ -2.16
NUP88-208ENST00000574087 TRIOO75962 3097 aa1.54□□□□□ -2.16
NUP88-208ENST00000574087 KNL1Q8NG31 2342 aa1.54□□□□□ -2.16
NUP88-208ENST00000574087 C10orf95Q9H7T3 257 aa1.54□□□□□ -2.16
NUP88-208ENST00000574087 TENM2Q9NT68 2774 aa1.54□□□□□ -2.16
NUP88-208ENST00000574087 CELSR2Q9HCU4 2923 aa1.54□□□□□ -2.16
NUP88-208ENST00000574087 XIRP2A4UGR9 3374 aa1.53□□□□□ -2.16
NUP88-208ENST00000574087 WDFY3Q8IZQ1 3526 aa1.53□□□□□ -2.16
NUP88-208ENST00000574087 SPINK6Q6UWN8 80 aa1.53□□□□□ -2.16
NUP88-208ENST00000574087 SPTBN1Q01082 2364 aaKnown RBP1.52□□□□□ -2.17
NUP88-208ENST00000574087 FLG2Q5D862 2391 aaPredicted RBP1.52□□□□□ -2.17
NUP88-208ENST00000574087 COL6A6A6NMZ7 2263 aa1.52□□□□□ -2.17
NUP88-208ENST00000574087 WNK2Q9Y3S1 2297 aa1.52□□□□□ -2.17
NUP88-208ENST00000574087 DCHS1Q96JQ0 3298 aa1.52□□□□□ -2.17
NUP88-208ENST00000574087 TRANK1O15050 2925 aa1.52□□□□□ -2.17
NUP88-208ENST00000574087 KRTAP4-1Q9BYQ7 146 aa1.52□□□□□ -2.17
NUP88-208ENST00000574087 PLCE1Q9P212 2302 aa1.52□□□□□ -2.17
NUP88-208ENST00000574087 PIEZO2Q9H5I5 2752 aa1.52□□□□□ -2.17
NUP88-208ENST00000574087 WNK1Q9H4A3 2382 aa1.51□□□□□ -2.17
NUP88-208ENST00000574087 DEFB4AO15263 64 aa1.51□□□□□ -2.17
NUP88-208ENST00000574087 DEFB135Q30KP9 77 aa1.51□□□□□ -2.17
NUP88-208ENST00000574087 DEFB124Q8NES8 71 aa1.51□□□□□ -2.17
NUP88-208ENST00000574087 C5orf42Q9H799 3197 aa1.51□□□□□ -2.17
NUP88-208ENST00000574087 FAM208BQ5VWN6 2430 aa1.51□□□□□ -2.17
NUP88-208ENST00000574087 DMXL2Q8TDJ6 3036 aa1.51□□□□□ -2.17
NUP88-208ENST00000574087 ZFHX4Q86UP3 3567 aa1.51□□□□□ -2.17
NUP88-208ENST00000574087 EP400Q96L91 3159 aa1.51□□□□□ -2.17
NUP88-208ENST00000574087 OTOGQ6ZRI0 2925 aa1.5□□□□□ -2.17
NUP88-208ENST00000574087 HELZ2Q9BYK8 2649 aaKnown RBP1.5□□□□□ -2.17
NUP88-208ENST00000574087 CHD9Q3L8U1 2897 aa1.49□□□□□ -2.17
NUP88-208ENST00000574087 CACNA1BQ00975 2339 aa1.49□□□□□ -2.17
NUP88-208ENST00000574087 APLNQ9ULZ1 77 aa1.49□□□□□ -2.17
NUP88-208ENST00000574087 LAMA1P25391 3075 aa1.49□□□□□ -2.17
NUP88-208ENST00000574087 BOD1L1Q8NFC6 3051 aa1.49□□□□□ -2.17
NUP88-208ENST00000574087 SPTBN2O15020 2390 aa1.49□□□□□ -2.17
NUP88-208ENST00000574087 TACC2O95359 2948 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms