RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 SMIM5Q71RC9 77 aa0.2□□□□□ -2.38
CHD3-217ENST00000574022 IGSF10Q6WRI0 2623 aa0.2□□□□□ -2.38
CHD3-217ENST00000574022 ITSN2Q9NZM3 1697 aa0.2□□□□□ -2.38
CHD3-217ENST00000574022 CACNA1AO00555 2505 aa0.2□□□□□ -2.38
CHD3-217ENST00000574022 FAT4Q6V0I7 4981 aa0.19□□□□□ -2.38
CHD3-217ENST00000574022 EP300Q09472 2414 aaPredicted RBP0.19□□□□□ -2.38
CHD3-217ENST00000574022 TRANK1O15050 2925 aa0.19□□□□□ -2.38
CHD3-217ENST00000574022 DEFB130BP0DP73 79 aa0.19□□□□□ -2.38
CHD3-217ENST00000574022 DEFB130AP0DP74 79 aa0.19□□□□□ -2.38
CHD3-217ENST00000574022 CELSR1Q9NYQ6 3014 aa0.19□□□□□ -2.38
CHD3-217ENST00000574022 CROCC2H7BZ55 1655 aa0.18□□□□□ -2.38
CHD3-217ENST00000574022 PRXQ9BXM0 1461 aa0.18□□□□□ -2.38
CHD3-217ENST00000574022 MAST1Q9Y2H9 1570 aa0.18□□□□□ -2.38
CHD3-217ENST00000574022 ANKRD36CQ5JPF3 1778 aa0.17□□□□□ -2.38
CHD3-217ENST00000574022 SYNE1Q8NF91 8797 aaKnown RBP0.17□□□□□ -2.38
CHD3-217ENST00000574022 K7EMI3 77 aa0.17□□□□□ -2.38
CHD3-217ENST00000574022 MINOS1Q5TGZ0 78 aa0.17□□□□□ -2.38
CHD3-217ENST00000574022 NCBP2-AS2Q69YL0 99 aa0.17□□□□□ -2.38
CHD3-217ENST00000574022 UGGT1Q9NYU2 1555 aa0.17□□□□□ -2.38
CHD3-217ENST00000574022 CHD8Q9HCK8 2581 aa0.17□□□□□ -2.38
CHD3-217ENST00000574022 CPS1P31327 1500 aa0.17□□□□□ -2.38
CHD3-217ENST00000574022 PDE4DIPQ5VU43 2346 aa0.16□□□□□ -2.38
CHD3-217ENST00000574022 BPTFQ12830 3046 aa0.16□□□□□ -2.38
CHD3-217ENST00000574022 CDC42BPAQ5VT25 1732 aa0.16□□□□□ -2.38
CHD3-217ENST00000574022 EEA1Q15075 1411 aa0.16□□□□□ -2.38
CHD3-217ENST00000574022 LRP1Q07954 4544 aaKnown RBP0.16□□□□□ -2.38
CHD3-217ENST00000574022 FCER1GP30273 86 aa0.16□□□□□ -2.38
CHD3-217ENST00000574022 MROH2AA6NES4 1674 aa0.16□□□□□ -2.38
CHD3-217ENST00000574022 PREX2Q70Z35 1606 aa0.16□□□□□ -2.38
CHD3-217ENST00000574022 TOGARAM1Q9Y4F4 1720 aa0.16□□□□□ -2.38
CHD3-217ENST00000574022 AKAP13Q12802 2813 aa0.15□□□□□ -2.38
CHD3-217ENST00000574022 SYCP2Q9BX26 1530 aa0.15□□□□□ -2.39
CHD3-217ENST00000574022 M0R1W7 72 aa0.15□□□□□ -2.39
CHD3-217ENST00000574022 SPRR2BP35325 72 aa0.15□□□□□ -2.39
CHD3-217ENST00000574022 SERF2P84101 59 aa0.15□□□□□ -2.39
CHD3-217ENST00000574022 NMES1Q9C002 83 aa0.15□□□□□ -2.39
CHD3-217ENST00000574022 SETXQ7Z333 2677 aaKnown RBP0.15□□□□□ -2.39
CHD3-217ENST00000574022 CLASP1Q7Z460 1538 aa0.14□□□□□ -2.39
CHD3-217ENST00000574022 FLNCQ14315 2725 aa0.14□□□□□ -2.39
CHD3-217ENST00000574022 DEFB106AQ8N104 65 aa0.14□□□□□ -2.39
CHD3-217ENST00000574022 C6orf48Q9UBA6 75 aa0.14□□□□□ -2.39
CHD3-217ENST00000574022 NSD1Q96L73 2696 aaPredicted RBP0.13□□□□□ -2.39
CHD3-217ENST00000574022 RPS27P42677 84 aaKnown RBP0.13□□□□□ -2.39
CHD3-217ENST00000574022 PRLHP81277 87 aa0.13□□□□□ -2.39
CHD3-217ENST00000574022 RPS27LQ71UM5 84 aaKnown RBP0.13□□□□□ -2.39
CHD3-217ENST00000574022 WNK1Q9H4A3 2382 aa0.13□□□□□ -2.39
CHD3-217ENST00000574022 ACANP16112 2415 aa0.13□□□□□ -2.39
CHD3-217ENST00000574022 MAP1BP46821 2468 aaKnown RBP0.12□□□□□ -2.39
CHD3-217ENST00000574022 CREBBPQ92793 2442 aa0.12□□□□□ -2.39
CHD3-217ENST00000574022 APC2O95996 2303 aa0.12□□□□□ -2.39
CHD3-217ENST00000574022 WT1-ASQ06250 92 aa0.12□□□□□ -2.39
CHD3-217ENST00000574022 S4R3F8 94 aa0.12□□□□□ -2.39
CHD3-217ENST00000574022 DSPP15924 2871 aaKnown RBP0.12□□□□□ -2.39
CHD3-217ENST00000574022 DMBT1Q9UGM3 2413 aaPredicted RBP0.12□□□□□ -2.39
CHD3-217ENST00000574022 PCNX1Q96RV3 2341 aa0.12□□□□□ -2.39
CHD3-217ENST00000574022 COL7A1Q02388 2944 aa0.11□□□□□ -2.39
CHD3-217ENST00000574022 FLNBO75369 2602 aaKnown RBP0.11□□□□□ -2.39
CHD3-217ENST00000574022 MUC5BQ9HC84 5762 aaPredicted RBP0.11□□□□□ -2.39
CHD3-217ENST00000574022 IGIPA6NJ69 53 aa0.11□□□□□ -2.39
CHD3-217ENST00000574022 HECTD1Q9ULT8 2610 aa0.11□□□□□ -2.39
CHD3-217ENST00000574022 MYCBP2O75592 4640 aa0.1□□□□□ -2.39
CHD3-217ENST00000574022 FAT2Q9NYQ8 4349 aa0.1□□□□□ -2.39
CHD3-217ENST00000574022 BSNQ9UPA5 3926 aa0.1□□□□□ -2.39
CHD3-217ENST00000574022 DCHS2Q6V1P9 2916 aa0.1□□□□□ -2.39
CHD3-217ENST00000574022 HUWE1Q7Z6Z7 4374 aaKnown RBP0.1□□□□□ -2.39
CHD3-217ENST00000574022 TNRC18O15417 2968 aaPredicted RBP0.09□□□□□ -2.39
CHD3-217ENST00000574022 ADCY10Q96PN6 1610 aa0.09□□□□□ -2.39
CHD3-217ENST00000574022 A0A1B0GUL6 1792 aa0.09□□□□□ -2.39
CHD3-217ENST00000574022 H3BUA1 57 aa0.09□□□□□ -2.4
CHD3-217ENST00000574022 SPRR2GQ9BYE4 73 aa0.09□□□□□ -2.4
CHD3-217ENST00000574022 TMEM167BQ9NRX6 74 aa0.09□□□□□ -2.4
CHD3-217ENST00000574022 PRRC2CQ9Y520 2896 aaKnown RBP0.09□□□□□ -2.4
CHD3-217ENST00000574022 HMCN2Q8NDA2 5059 aa0.08□□□□□ -2.4
CHD3-217ENST00000574022 NBASA2RRP1 2371 aa0.08□□□□□ -2.4
CHD3-217ENST00000574022 C9orf92A6NGG3 77 aa0.08□□□□□ -2.4
CHD3-217ENST00000574022 H3BNG1 76 aa0.08□□□□□ -2.4
CHD3-217ENST00000574022 TIMM8BQ9Y5J9 83 aaPredicted RBP0.08□□□□□ -2.4
CHD3-217ENST00000574022 ABCA5Q8WWZ7 1642 aa0.08□□□□□ -2.4
CHD3-217ENST00000574022 NRXN3Q9Y4C0 1643 aa0.08□□□□□ -2.4
CHD3-217ENST00000574022 FLNAP21333 2647 aaKnown RBP0.08□□□□□ -2.4
CHD3-217ENST00000574022 EFCAB6Q5THR3 1501 aa0.08□□□□□ -2.4
CHD3-217ENST00000574022 SPTBN4Q9H254 2564 aa0.07□□□□□ -2.4
CHD3-217ENST00000574022 COL6A3P12111 3177 aa0.07□□□□□ -2.4
CHD3-217ENST00000574022 LINC00308Q8TCZ7 52 aa0.07□□□□□ -2.4
CHD3-217ENST00000574022 HSPG2P98160 4391 aa0.07□□□□□ -2.4
CHD3-217ENST00000574022 FANCD2Q9BXW9 1451 aa0.07□□□□□ -2.4
CHD3-217ENST00000574022 LPAP08519 4548 aa0.07□□□□□ -2.4
CHD3-217ENST00000574022 KMT2AQ03164 3969 aa0.07□□□□□ -2.4
CHD3-217ENST00000574022 AGLP35573 1532 aa0.07□□□□□ -2.4
CHD3-217ENST00000574022 CEP290O15078 2479 aa0.06□□□□□ -2.4
CHD3-217ENST00000574022 LMO7Q8WWI1 1683 aa0.06□□□□□ -2.4
CHD3-217ENST00000574022 H0YGX0 51 aa0.06□□□□□ -2.4
CHD3-217ENST00000574022 PLNP26678 52 aa0.06□□□□□ -2.4
CHD3-217ENST00000574022 SPRR2AP35326 72 aa0.06□□□□□ -2.4
CHD3-217ENST00000574022 ABCC8Q09428 1581 aa0.06□□□□□ -2.4
CHD3-217ENST00000574022 SETD2Q9BYW2 2564 aaPredicted RBP0.05□□□□□ -2.4
CHD3-217ENST00000574022 PRKDCP78527 4128 aaKnown RBP0.05□□□□□ -2.4
CHD3-217ENST00000574022 TENM2Q9NT68 2774 aa0.05□□□□□ -2.4
CHD3-217ENST00000574022 HECTD4Q9Y4D8 3996 aa0.04□□□□□ -2.4
CHD3-217ENST00000574022 ZANQ9Y493 2812 aa0.04□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms