RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CEND1Q8N111 149 aa8.73□□□□□ -1.01
CLN3-229ENST00000567963 A0A1B0GWB2 263 aa8.72□□□□□ -1.01
CLN3-229ENST00000567963 KRTAP19-2Q3LHN2 52 aa8.72□□□□□ -1.01
CLN3-229ENST00000567963 IGLV8-61A0A075B6I0 122 aa8.71□□□□□ -1.01
CLN3-229ENST00000567963 H7C2G1 150 aa8.71□□□□□ -1.01
CLN3-229ENST00000567963 Q5XG85 94 aa8.71□□□□□ -1.01
CLN3-229ENST00000567963 IGLV5-48A0A075B6I7 105 aa8.7□□□□□ -1.02
CLN3-229ENST00000567963 A6NDN8 102 aa8.7□□□□□ -1.02
CLN3-229ENST00000567963 A4D1N5 150 aa8.7□□□□□ -1.02
CLN3-229ENST00000567963 FXYD2P54710 66 aa8.7□□□□□ -1.02
CLN3-229ENST00000567963 TMEM238LA0A1B0GVL6 79 aa8.68□□□□□ -1.02
CLN3-229ENST00000567963 A6NJY4 79 aa8.68□□□□□ -1.02
CLN3-229ENST00000567963 A0A0G2JQZ4 141 aa8.67□□□□□ -1.02
CLN3-229ENST00000567963 BVES-AS1Q5T3Y7 98 aa8.67□□□□□ -1.02
CLN3-229ENST00000567963 C1orf195Q5TG92 126 aa8.67□□□□□ -1.02
CLN3-229ENST00000567963 M0R143 59 aa8.66□□□□□ -1.02
CLN3-229ENST00000567963 A0A0B4J2C4 111 aa8.65□□□□□ -1.02
CLN3-229ENST00000567963 MT1HP80294 61 aa8.65□□□□□ -1.02
CLN3-229ENST00000567963 TRAV13-2A0A0B4J235 113 aa8.64□□□□□ -1.03
CLN3-229ENST00000567963 CFC1BP0CG36 223 aa8.64□□□□□ -1.03
CLN3-229ENST00000567963 CFC1P0CG37 223 aa8.64□□□□□ -1.03
CLN3-229ENST00000567963 SMIM11BQ8TCY0 68 aa8.64□□□□□ -1.03
CLN3-229ENST00000567963 NHP2Q9NX24 153 aaKnown RBP8.64□□□□□ -1.03
CLN3-229ENST00000567963 FSIP2Q5CZC0 6907 aa8.61□□□□□ -1.03
CLN3-229ENST00000567963 PCP4L1A6NKN8 68 aa8.6□□□□□ -1.03
CLN3-229ENST00000567963 RPL37P61927 97 aaKnown RBP8.59□□□□□ -1.03
CLN3-229ENST00000567963 TCL1BO95988 128 aa8.58□□□□□ -1.04
CLN3-229ENST00000567963 RAB37Q96AX2 223 aa8.58□□□□□ -1.04
CLN3-229ENST00000567963 PRO1854Q9UHT4 67 aa8.58□□□□□ -1.04
CLN3-229ENST00000567963 SNHG12Q9BXW3 62 aa8.57□□□□□ -1.04
CLN3-229ENST00000567963 CRCT1Q9UGL9 99 aa8.57□□□□□ -1.04
CLN3-229ENST00000567963 K7ERJ3 54 aa8.57□□□□□ -1.04
CLN3-229ENST00000567963 VAMP3Q15836 100 aa8.57□□□□□ -1.04
CLN3-229ENST00000567963 LINC00575Q6W349 94 aa8.56□□□□□ -1.04
CLN3-229ENST00000567963 F8WEM9 126 aa8.55□□□□□ -1.04
CLN3-229ENST00000567963 BATFQ16520 125 aa8.54□□□□□ -1.04
CLN3-229ENST00000567963 hADV29S1A0JD25 119 aa8.53□□□□□ -1.04
CLN3-229ENST00000567963 LORP23490 312 aaPredicted RBP8.53□□□□□ -1.04
CLN3-229ENST00000567963 Q6ZQY7 126 aa8.52□□□□□ -1.05
CLN3-229ENST00000567963 KRTAP10-6P60371 365 aaPredicted RBP8.51□□□□□ -1.05
CLN3-229ENST00000567963 Q6JHZ5 121 aa8.51□□□□□ -1.05
CLN3-229ENST00000567963 IGFL1Q6UW32 110 aa8.5□□□□□ -1.05
CLN3-229ENST00000567963 CLEC2BQ92478 149 aa8.5□□□□□ -1.05
CLN3-229ENST00000567963 TRBV7-7A0A0K0K1E9 115 aa8.49□□□□□ -1.05
CLN3-229ENST00000567963 FLGP20930 4061 aaPredicted RBP8.48□□□□□ -1.05
CLN3-229ENST00000567963 OCIAD2Q56VL3 154 aa8.48□□□□□ -1.05
CLN3-229ENST00000567963 M0R2T5 61 aa8.47□□□□□ -1.05
CLN3-229ENST00000567963 TAX1BP3O14907 124 aa8.47□□□□□ -1.05
CLN3-229ENST00000567963 COL5A1-AS1Q5SY13 56 aa8.47□□□□□ -1.05
CLN3-229ENST00000567963 COX6B2Q6YFQ2 88 aa8.47□□□□□ -1.05
CLN3-229ENST00000567963 TRIAP1O43715 76 aa8.46□□□□□ -1.05
CLN3-229ENST00000567963 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.46□□□□□ -1.05
CLN3-229ENST00000567963 PPDPFLQ8WWR9 84 aa8.44□□□□□ -1.06
CLN3-229ENST00000567963 C9orf118A6NHY6 69 aa8.43□□□□□ -1.06
CLN3-229ENST00000567963 H0YGX0 51 aa8.42□□□□□ -1.06
CLN3-229ENST00000567963 PSMB2P49721 201 aa8.42□□□□□ -1.06
CLN3-229ENST00000567963 OBSCN-AS1Q96MR7 158 aa8.42□□□□□ -1.06
CLN3-229ENST00000567963 COX6CP09669 75 aa8.41□□□□□ -1.06
CLN3-229ENST00000567963 Q75L30 129 aa8.41□□□□□ -1.06
CLN3-229ENST00000567963 NAA38Q9BRA0 125 aaKnown RBP8.41□□□□□ -1.06
CLN3-229ENST00000567963 H3BUT2 72 aa8.4□□□□□ -1.06
CLN3-229ENST00000567963 ATP11AUNQ6ZP68 121 aa8.4□□□□□ -1.06
CLN3-229ENST00000567963 FAM218AQ96MZ4 157 aa8.39□□□□□ -1.07
CLN3-229ENST00000567963 A0A1W2PPM0 123 aa8.38□□□□□ -1.07
CLN3-229ENST00000567963 LST1O00453 97 aa8.38□□□□□ -1.07
CLN3-229ENST00000567963 A0A1B0GX51 115 aa8.38□□□□□ -1.07
CLN3-229ENST00000567963 LYRM7Q5U5X0 104 aa8.38□□□□□ -1.07
CLN3-229ENST00000567963 SCGB1C2P0DMR2 95 aa8.34□□□□□ -1.07
CLN3-229ENST00000567963 Q6Q795 121 aa8.34□□□□□ -1.07
CLN3-229ENST00000567963 Q96NJ1 140 aa8.34□□□□□ -1.07
CLN3-229ENST00000567963 TRACP01848 142 aa8.33□□□□□ -1.08
CLN3-229ENST00000567963 FABP2P12104 132 aa8.33□□□□□ -1.08
CLN3-229ENST00000567963 TRBV20-1A0A075B6N2 111 aa8.32□□□□□ -1.08
CLN3-229ENST00000567963 SS18L2Q9UHA2 77 aa8.32□□□□□ -1.08
CLN3-229ENST00000567963 SNCGO76070 127 aa8.32□□□□□ -1.08
CLN3-229ENST00000567963 TEN1Q86WV5 123 aa8.32□□□□□ -1.08
CLN3-229ENST00000567963 ATXN8Q156A1 80 aa8.31□□□□□ -1.08
CLN3-229ENST00000567963 NDUFV3P56181 108 aaKnown RBP8.3□□□□□ -1.08
CLN3-229ENST00000567963 C20orf166-AS1Q96NR2 134 aa8.29□□□□□ -1.08
CLN3-229ENST00000567963 SPCS1Q9Y6A9 102 aa8.29□□□□□ -1.08
CLN3-229ENST00000567963 DNAL4O96015 105 aa8.28□□□□□ -1.08
CLN3-229ENST00000567963 A0A087WSZ3 146 aa8.26□□□□□ -1.09
CLN3-229ENST00000567963 A8MUU9 505 aa8.26□□□□□ -1.09
CLN3-229ENST00000567963 K7EP34 96 aa8.26□□□□□ -1.09
CLN3-229ENST00000567963 H3BMG7 143 aa8.25□□□□□ -1.09
CLN3-229ENST00000567963 ORMDL1Q9P0S3 153 aa8.25□□□□□ -1.09
CLN3-229ENST00000567963 H3BQ85 93 aa8.23□□□□□ -1.09
CLN3-229ENST00000567963 GHRHP01286 108 aa8.23□□□□□ -1.09
CLN3-229ENST00000567963 GTF2H5Q6ZYL4 71 aa8.21□□□□□ -1.09
CLN3-229ENST00000567963 C9JAW5 83 aa8.2□□□□□ -1.1
CLN3-229ENST00000567963 A0A1B0GV90 55 aa8.19□□□□□ -1.1
CLN3-229ENST00000567963 A0A1W2PNM2 257 aa8.19□□□□□ -1.1
CLN3-229ENST00000567963 TMEM256-PLSCR3K7ERE1 68 aa8.19□□□□□ -1.1
CLN3-229ENST00000567963 DSCR10P59022 87 aa8.19□□□□□ -1.1
CLN3-229ENST00000567963 H3BT86 120 aa8.19□□□□□ -1.1
CLN3-229ENST00000567963 UBE2V1Q13404 147 aa8.18□□□□□ -1.1
CLN3-229ENST00000567963 KRTAP9-8Q9BYQ0 159 aa8.18□□□□□ -1.1
CLN3-229ENST00000567963 PRO0461Q9UI25 63 aa8.18□□□□□ -1.1
CLN3-229ENST00000567963 BAALC-AS2P0C853 105 aa8.17□□□□□ -1.1
CLN3-229ENST00000567963 SMCPP49901 116 aaPredicted RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms