RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 KRTAP1-4P0C5Y4 121 aa6.67□□□□□ -1.34
CLN3-226ENST00000567160 Q6ZQY7 126 aa6.67□□□□□ -1.34
CLN3-226ENST00000567160 A0A1W2PPM0 123 aa6.65□□□□□ -1.34
CLN3-226ENST00000567160 LYRM7Q5U5X0 104 aa6.65□□□□□ -1.34
CLN3-226ENST00000567160 A0A1B0GX51 115 aa6.64□□□□□ -1.35
CLN3-226ENST00000567160 TCL1BO95988 128 aa6.64□□□□□ -1.35
CLN3-226ENST00000567160 DNAL4O96015 105 aa6.64□□□□□ -1.35
CLN3-226ENST00000567160 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.64□□□□□ -1.35
CLN3-226ENST00000567160 LST1O00453 97 aa6.63□□□□□ -1.35
CLN3-226ENST00000567160 FABP2P12104 132 aa6.63□□□□□ -1.35
CLN3-226ENST00000567160 LINC01547P58512 204 aaPredicted RBP6.63□□□□□ -1.35
CLN3-226ENST00000567160 LINC00483Q53H64 154 aa6.63□□□□□ -1.35
CLN3-226ENST00000567160 IGLV5-48A0A075B6I7 105 aa6.62□□□□□ -1.35
CLN3-226ENST00000567160 A0A087X002 238 aa6.62□□□□□ -1.35
CLN3-226ENST00000567160 TEX49A0A1B0GTD5 131 aa6.62□□□□□ -1.35
CLN3-226ENST00000567160 ATXN8Q156A1 80 aa6.62□□□□□ -1.35
CLN3-226ENST00000567160 FAM229BQ4G0N7 80 aa6.62□□□□□ -1.35
CLN3-226ENST00000567160 Q8N377 158 aa6.62□□□□□ -1.35
CLN3-226ENST00000567160 IGLV9-49A0A0B4J1Y8 123 aa6.61□□□□□ -1.35
CLN3-226ENST00000567160 TRACP01848 142 aa6.61□□□□□ -1.35
CLN3-226ENST00000567160 CRYGAP11844 174 aa6.61□□□□□ -1.35
CLN3-226ENST00000567160 SPRR1BP22528 89 aa6.61□□□□□ -1.35
CLN3-226ENST00000567160 C3orf22Q8N5N4 141 aa6.61□□□□□ -1.35
CLN3-226ENST00000567160 TRBV20-1A0A075B6N2 111 aa6.6□□□□□ -1.35
CLN3-226ENST00000567160 KRTAP13-2Q52LG2 175 aa6.6□□□□□ -1.35
CLN3-226ENST00000567160 OCIAD2Q56VL3 154 aa6.6□□□□□ -1.35
CLN3-226ENST00000567160 CDIP1Q9H305 208 aa6.6□□□□□ -1.35
CLN3-226ENST00000567160 ORMDL1Q9P0S3 153 aa6.6□□□□□ -1.35
CLN3-226ENST00000567160 C9orf153Q5TBE3 101 aa6.59□□□□□ -1.35
CLN3-226ENST00000567160 LAMTOR3Q9UHA4 124 aa6.59□□□□□ -1.35
CLN3-226ENST00000567160 SPCS1Q9Y6A9 102 aa6.59□□□□□ -1.35
CLN3-226ENST00000567160 MOBPQ13875 183 aa6.58□□□□□ -1.36
CLN3-226ENST00000567160 SMIM29Q86T20 159 aa6.58□□□□□ -1.36
CLN3-226ENST00000567160 C9JAW5 83 aa6.57□□□□□ -1.36
CLN3-226ENST00000567160 TYMSOSQ8TAI1 123 aa6.57□□□□□ -1.36
CLN3-226ENST00000567160 PPDPFLQ8WWR9 84 aa6.57□□□□□ -1.36
CLN3-226ENST00000567160 F8WEM9 126 aa6.56□□□□□ -1.36
CLN3-226ENST00000567160 H3BMG7 143 aa6.56□□□□□ -1.36
CLN3-226ENST00000567160 GHRHP01286 108 aa6.56□□□□□ -1.36
CLN3-226ENST00000567160 BAALC-AS2P0C853 105 aa6.56□□□□□ -1.36
CLN3-226ENST00000567160 MTURNQ8N3F0 131 aa6.55□□□□□ -1.36
CLN3-226ENST00000567160 MUC17Q685J3 4493 aa6.54□□□□□ -1.36
CLN3-226ENST00000567160 A0A1B0GV72 72 aa6.54□□□□□ -1.36
CLN3-226ENST00000567160 H3BQ85 93 aa6.54□□□□□ -1.36
CLN3-226ENST00000567160 K7EP34 96 aa6.54□□□□□ -1.36
CLN3-226ENST00000567160 TMEM256-PLSCR3K7ERE1 68 aa6.54□□□□□ -1.36
CLN3-226ENST00000567160 NDUFV3P56181 108 aaKnown RBP6.54□□□□□ -1.36
CLN3-226ENST00000567160 TPRXLQ17RH7 258 aa6.54□□□□□ -1.36
CLN3-226ENST00000567160 Q8NBF4 154 aa6.54□□□□□ -1.36
CLN3-226ENST00000567160 GTF2H5Q6ZYL4 71 aa6.52□□□□□ -1.37
CLN3-226ENST00000567160 A0A0G2JQZ4 141 aa6.51□□□□□ -1.37
CLN3-226ENST00000567160 UBE2V1Q13404 147 aa6.51□□□□□ -1.37
CLN3-226ENST00000567160 SSBP3-AS1Q7Z2R9 100 aa6.51□□□□□ -1.37
CLN3-226ENST00000567160 A0A1B0GV90 55 aa6.5□□□□□ -1.37
CLN3-226ENST00000567160 ANKRD29Q8N6D5 301 aa6.5□□□□□ -1.37
CLN3-226ENST00000567160 LINC00304Q8N9R0 145 aa6.5□□□□□ -1.37
CLN3-226ENST00000567160 IGLV8-61A0A075B6I0 122 aa6.48□□□□□ -1.37
CLN3-226ENST00000567160 H3BT86 120 aa6.48□□□□□ -1.37
CLN3-226ENST00000567160 HRCT1Q6UXD1 115 aa6.48□□□□□ -1.37
CLN3-226ENST00000567160 RETNLBQ9BQ08 111 aa6.48□□□□□ -1.37
CLN3-226ENST00000567160 IGLV7-46A0A075B6I9 117 aa6.47□□□□□ -1.37
CLN3-226ENST00000567160 C4orf48Q5BLP8 95 aa6.47□□□□□ -1.37
CLN3-226ENST00000567160 Q6JHZ5 121 aa6.47□□□□□ -1.37
CLN3-226ENST00000567160 IGFL1Q6UW32 110 aa6.47□□□□□ -1.37
CLN3-226ENST00000567160 SMCPP49901 116 aaPredicted RBP6.46□□□□□ -1.38
CLN3-226ENST00000567160 PRO0461Q9UI25 63 aa6.46□□□□□ -1.38
CLN3-226ENST00000567160 RBM3P98179 157 aaKnown RBP6.45□□□□□ -1.38
CLN3-226ENST00000567160 JMJD7-PLA2G4BH0Y9G9 81 aa6.43□□□□□ -1.38
CLN3-226ENST00000567160 SPAG11AQ6PDA7 123 aa6.43□□□□□ -1.38
CLN3-226ENST00000567160 DSCR8Q96T75 97 aa6.43□□□□□ -1.38
CLN3-226ENST00000567160 KRTAP9-7A8MTY7 169 aa6.42□□□□□ -1.38
CLN3-226ENST00000567160 C14orf132Q9NPU4 83 aa6.42□□□□□ -1.38
CLN3-226ENST00000567160 TRBV7-4A0A0J9YYF1 115 aa6.41□□□□□ -1.38
CLN3-226ENST00000567160 F8W1H4 67 aa6.41□□□□□ -1.38
CLN3-226ENST00000567160 SPINK1P00995 79 aa6.41□□□□□ -1.38
CLN3-226ENST00000567160 CD164Q04900 197 aa6.41□□□□□ -1.38
CLN3-226ENST00000567160 VPS25Q9BRG1 176 aa6.41□□□□□ -1.38
CLN3-226ENST00000567160 A0A1W2PNM2 257 aa6.4□□□□□ -1.38
CLN3-226ENST00000567160 CCKP06307 115 aa6.4□□□□□ -1.38
CLN3-226ENST00000567160 ASB16-AS1Q495Z4 193 aa6.4□□□□□ -1.38
CLN3-226ENST00000567160 OBSCN-AS1Q96MR7 158 aa6.4□□□□□ -1.38
CLN3-226ENST00000567160 TRBV7-7A0A0K0K1E9 115 aa6.39□□□□□ -1.39
CLN3-226ENST00000567160 TEN1Q86WV5 123 aa6.38□□□□□ -1.39
CLN3-226ENST00000567160 LOC110117498A0A087WWA1 95 aa6.37□□□□□ -1.39
CLN3-226ENST00000567160 SEC61BP60468 96 aaKnown RBP6.37□□□□□ -1.39
CLN3-226ENST00000567160 ETDBQ3ZM63 59 aa6.37□□□□□ -1.39
CLN3-226ENST00000567160 Q6Q795 121 aa6.37□□□□□ -1.39
CLN3-226ENST00000567160 Q6ZQT0 140 aa6.37□□□□□ -1.39
CLN3-226ENST00000567160 LIMD2Q9BT23 127 aa6.37□□□□□ -1.39
CLN3-226ENST00000567160 RPS29P62273 56 aaKnown RBP6.36□□□□□ -1.39
CLN3-226ENST00000567160 A0A087WSZ3 146 aa6.35□□□□□ -1.39
CLN3-226ENST00000567160 PDE6GP18545 87 aa6.35□□□□□ -1.39
CLN3-226ENST00000567160 FP248Q71RG6 208 aaPredicted RBP6.34□□□□□ -1.39
CLN3-226ENST00000567160 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.33□□□□□ -1.4
CLN3-226ENST00000567160 KRTAP4-1Q9BYQ7 146 aa6.33□□□□□ -1.4
CLN3-226ENST00000567160 Q5XG85 94 aa6.32□□□□□ -1.4
CLN3-226ENST00000567160 SS18L2Q9UHA2 77 aa6.31□□□□□ -1.4
CLN3-226ENST00000567160 C1orf195Q5TG92 126 aa6.3□□□□□ -1.4
CLN3-226ENST00000567160 C21orf62-AS1Q17RA5 79 aa6.29□□□□□ -1.4
CLN3-226ENST00000567160 KRTAP13-3Q3SY46 172 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms