RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 C3orf22Q8N5N4 141 aa5.93□□□□□ -1.46
USP3-216ENST00000559873 LINC00304Q8N9R0 145 aa5.93□□□□□ -1.46
USP3-216ENST00000559873 H3BQ85 93 aa5.92□□□□□ -1.46
USP3-216ENST00000559873 C4orf48Q5BLP8 95 aa5.92□□□□□ -1.46
USP3-216ENST00000559873 SPAG11AQ6PDA7 123 aa5.92□□□□□ -1.46
USP3-216ENST00000559873 LINC01547P58512 204 aaPredicted RBP5.91□□□□□ -1.46
USP3-216ENST00000559873 CLEC2BQ92478 149 aa5.91□□□□□ -1.46
USP3-216ENST00000559873 FAM218AQ96MZ4 157 aa5.91□□□□□ -1.46
USP3-216ENST00000559873 Q8N377 158 aa5.9□□□□□ -1.46
USP3-216ENST00000559873 SNHG12Q9BXW3 62 aa5.9□□□□□ -1.46
USP3-216ENST00000559873 HERC1Q15751 4861 aa5.9□□□□□ -1.47
USP3-216ENST00000559873 LST1O00453 97 aa5.89□□□□□ -1.47
USP3-216ENST00000559873 TRACP01848 142 aa5.89□□□□□ -1.47
USP3-216ENST00000559873 ORMDL1Q9P0S3 153 aa5.89□□□□□ -1.47
USP3-216ENST00000559873 ATXN8Q156A1 80 aa5.88□□□□□ -1.47
USP3-216ENST00000559873 PCP4L1A6NKN8 68 aa5.87□□□□□ -1.47
USP3-216ENST00000559873 SPINK1P00995 79 aa5.87□□□□□ -1.47
USP3-216ENST00000559873 COL5A1-AS1Q5SY13 56 aa5.87□□□□□ -1.47
USP3-216ENST00000559873 SMIM29Q86T20 159 aa5.87□□□□□ -1.47
USP3-216ENST00000559873 TRBV20-1A0A075B6N2 111 aa5.86□□□□□ -1.47
USP3-216ENST00000559873 C9orf118A6NHY6 69 aa5.86□□□□□ -1.47
USP3-216ENST00000559873 H3BUT2 72 aa5.86□□□□□ -1.47
USP3-216ENST00000559873 TMEM256-PLSCR3K7ERE1 68 aa5.86□□□□□ -1.47
USP3-216ENST00000559873 FABP2P12104 132 aa5.86□□□□□ -1.47
USP3-216ENST00000559873 RPS29P62273 56 aaKnown RBP5.86□□□□□ -1.47
USP3-216ENST00000559873 Q6JHZ5 121 aa5.86□□□□□ -1.47
USP3-216ENST00000559873 NAA38Q9BRA0 125 aaKnown RBP5.86□□□□□ -1.47
USP3-216ENST00000559873 TAX1BP3O14907 124 aa5.84□□□□□ -1.47
USP3-216ENST00000559873 TCL1BO95988 128 aa5.84□□□□□ -1.47
USP3-216ENST00000559873 NDUFV3P56181 108 aaKnown RBP5.84□□□□□ -1.47
USP3-216ENST00000559873 CD164Q04900 197 aa5.84□□□□□ -1.47
USP3-216ENST00000559873 LIMD2Q9BT23 127 aa5.84□□□□□ -1.47
USP3-216ENST00000559873 IGLV8-61A0A075B6I0 122 aa5.83□□□□□ -1.48
USP3-216ENST00000559873 A0A1W2PPM0 123 aa5.83□□□□□ -1.48
USP3-216ENST00000559873 H3BMG7 143 aa5.81□□□□□ -1.48
USP3-216ENST00000559873 UBE2V1Q13404 147 aa5.81□□□□□ -1.48
USP3-216ENST00000559873 HMCN2Q8NDA2 5059 aa5.79□□□□□ -1.48
USP3-216ENST00000559873 BAALC-AS2P0C853 105 aa5.79□□□□□ -1.48
USP3-216ENST00000559873 HRCT1Q6UXD1 115 aa5.79□□□□□ -1.48
USP3-216ENST00000559873 SPCS1Q9Y6A9 102 aa5.79□□□□□ -1.48
USP3-216ENST00000559873 IGFL1Q6UW32 110 aa5.78□□□□□ -1.48
USP3-216ENST00000559873 ANKRD29Q8N6D5 301 aa5.78□□□□□ -1.48
USP3-216ENST00000559873 C9JAW5 83 aa5.77□□□□□ -1.49
USP3-216ENST00000559873 PRR4Q16378 134 aa5.77□□□□□ -1.49
USP3-216ENST00000559873 FP248Q71RG6 208 aaPredicted RBP5.77□□□□□ -1.49
USP3-216ENST00000559873 JMJD7-PLA2G4BH0Y9G9 81 aa5.76□□□□□ -1.49
USP3-216ENST00000559873 Q5XG85 94 aa5.76□□□□□ -1.49
USP3-216ENST00000559873 SS18L2Q9UHA2 77 aa5.76□□□□□ -1.49
USP3-216ENST00000559873 TRBV7-7A0A0K0K1E9 115 aa5.75□□□□□ -1.49
USP3-216ENST00000559873 A0A1B0GV72 72 aa5.75□□□□□ -1.49
USP3-216ENST00000559873 H3BT86 120 aa5.75□□□□□ -1.49
USP3-216ENST00000559873 RBM3P98179 157 aaKnown RBP5.75□□□□□ -1.49
USP3-216ENST00000559873 Q6Q795 121 aa5.75□□□□□ -1.49
USP3-216ENST00000559873 TEN1Q86WV5 123 aa5.75□□□□□ -1.49
USP3-216ENST00000559873 DSCR8Q96T75 97 aa5.75□□□□□ -1.49
USP3-216ENST00000559873 RETNLBQ9BQ08 111 aa5.75□□□□□ -1.49
USP3-216ENST00000559873 A0A0G2JQZ4 141 aa5.74□□□□□ -1.49
USP3-216ENST00000559873 C21orf62-AS1Q17RA5 79 aa5.74□□□□□ -1.49
USP3-216ENST00000559873 GTF2H5Q6ZYL4 71 aa5.74□□□□□ -1.49
USP3-216ENST00000559873 K7EP34 96 aa5.73□□□□□ -1.49
USP3-216ENST00000559873 IGLV7-46A0A075B6I9 117 aa5.72□□□□□ -1.49
USP3-216ENST00000559873 TRBV7-4A0A0J9YYF1 115 aa5.71□□□□□ -1.5
USP3-216ENST00000559873 CCKP06307 115 aa5.71□□□□□ -1.5
USP3-216ENST00000559873 PDE6GP18545 87 aa5.71□□□□□ -1.5
USP3-216ENST00000559873 ASB16-AS1Q495Z4 193 aa5.7□□□□□ -1.5
USP3-216ENST00000559873 VPS25Q9BRG1 176 aa5.7□□□□□ -1.5
USP3-216ENST00000559873 A0A087WSZ3 146 aa5.69□□□□□ -1.5
USP3-216ENST00000559873 MTURNQ8N3F0 131 aa5.69□□□□□ -1.5
USP3-216ENST00000559873 LOC110117498A0A087WWA1 95 aa5.68□□□□□ -1.5
USP3-216ENST00000559873 A0A1W2PNM2 257 aa5.68□□□□□ -1.5
USP3-216ENST00000559873 TPRXLQ17RH7 258 aa5.68□□□□□ -1.5
USP3-216ENST00000559873 A0A1B0GW54 56 aa5.67□□□□□ -1.5
USP3-216ENST00000559873 C14orf132Q9NPU4 83 aa5.67□□□□□ -1.5
USP3-216ENST00000559873 C1orf195Q5TG92 126 aa5.66□□□□□ -1.5
USP3-216ENST00000559873 OBSCN-AS1Q96MR7 158 aa5.66□□□□□ -1.5
USP3-216ENST00000559873 Q6ZQT0 140 aa5.65□□□□□ -1.5
USP3-216ENST00000559873 CDIP1Q9H305 208 aa5.65□□□□□ -1.5
USP3-216ENST00000559873 LRP2P98164 4655 aa5.65□□□□□ -1.51
USP3-216ENST00000559873 F8W1H4 67 aa5.64□□□□□ -1.51
USP3-216ENST00000559873 PRO0461Q9UI25 63 aa5.63□□□□□ -1.51
USP3-216ENST00000559873 KRTAP13-3Q3SY46 172 aa5.62□□□□□ -1.51
USP3-216ENST00000559873 SMCPP49901 116 aaPredicted RBP5.61□□□□□ -1.51
USP3-216ENST00000559873 SIGMAR1Q99720 223 aa5.61□□□□□ -1.51
USP3-216ENST00000559873 UBR4Q5T4S7 5183 aa5.59□□□□□ -1.51
USP3-216ENST00000559873 LPAP08519 4548 aa5.59□□□□□ -1.51
USP3-216ENST00000559873 J3KT08 172 aa5.58□□□□□ -1.52
USP3-216ENST00000559873 IGKV4-1P06312 121 aa5.58□□□□□ -1.52
USP3-216ENST00000559873 Q96NJ1 140 aa5.58□□□□□ -1.52
USP3-216ENST00000559873 LINC00472Q9H8W2 130 aa5.57□□□□□ -1.52
USP3-216ENST00000559873 C9orf92A6NGG3 77 aa5.56□□□□□ -1.52
USP3-216ENST00000559873 A0A1B0GV90 55 aa5.55□□□□□ -1.52
USP3-216ENST00000559873 NREPQ16612 68 aa5.55□□□□□ -1.52
USP3-216ENST00000559873 ETDBQ3ZM63 59 aa5.55□□□□□ -1.52
USP3-216ENST00000559873 XP32Q5T750 250 aa5.54□□□□□ -1.52
USP3-216ENST00000559873 NDUFB1O75438 58 aa5.53□□□□□ -1.52
USP3-216ENST00000559873 SEC61BP60468 96 aaKnown RBP5.52□□□□□ -1.53
USP3-216ENST00000559873 DEFB116Q30KQ4 102 aa5.52□□□□□ -1.53
USP3-216ENST00000559873 UBL5Q9BZL1 73 aa5.51□□□□□ -1.53
USP3-216ENST00000559873 IGHV6-1A0A0B4J1U7 121 aa5.5□□□□□ -1.53
USP3-216ENST00000559873 A0A1B0GVX0 72 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms