RNA–Protein interactions for RNA: ENST00000558847.1

CASC4-206, Transcript of cancer susceptibility 4, humanhuman

TSL 3

Gene CASC4, Length 622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4-206ENST00000558847 NIPBLQ6KC79 2804 aaeCLIP-0.72□□□□□ -2.52
CASC4-206ENST00000558847 TRANK1O15050 2925 aa-0.72□□□□□ -2.52
CASC4-206ENST00000558847 PRO3102Q9H379 93 aa-0.72□□□□□ -2.52
CASC4-206ENST00000558847 USP9XQ93008 2570 aaPredicted RBP-0.72□□□□□ -2.53
CASC4-206ENST00000558847 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.73□□□□□ -2.53
CASC4-206ENST00000558847 USP32Q8NFA0 1604 aa-0.73□□□□□ -2.53
CASC4-206ENST00000558847 C9orf92A6NGG3 77 aa-0.73□□□□□ -2.53
CASC4-206ENST00000558847 REV3LO60673 3130 aa-0.73□□□□□ -2.53
CASC4-206ENST00000558847 PKD1P98161 4303 aa-0.73□□□□□ -2.53
CASC4-206ENST00000558847 POLR1AO95602 1720 aaPredicted RBP-0.74□□□□□ -2.53
CASC4-206ENST00000558847 LTN1O94822 1766 aa-0.74□□□□□ -2.53
CASC4-206ENST00000558847 IFI27P40305 119 aaPredicted RBP-0.74□□□□□ -2.53
CASC4-206ENST00000558847 LAMA3Q16787 3333 aa-0.74□□□□□ -2.53
CASC4-206ENST00000558847 NCOA2Q15596 1464 aa-0.74□□□□□ -2.53
CASC4-206ENST00000558847 NWD1Q149M9 1564 aa-0.74□□□□□ -2.53
CASC4-206ENST00000558847 TMEM131LA2VDJ0 1609 aa-0.75□□□□□ -2.53
CASC4-206ENST00000558847 PLECQ15149 4684 aaKnown RBP-0.75□□□□□ -2.53
CASC4-206ENST00000558847 GNG2P59768 71 aa-0.75□□□□□ -2.53
CASC4-206ENST00000558847 ANKRD50Q9ULJ7 1429 aa-0.75□□□□□ -2.53
CASC4-206ENST00000558847 CCDC88BA6NC98 1476 aa-0.75□□□□□ -2.53
CASC4-206ENST00000558847 MGAM2Q2M2H8 2515 aa-0.75□□□□□ -2.53
CASC4-206ENST00000558847 ANKRD11Q6UB99 2663 aaPredicted RBP-0.75□□□□□ -2.53
CASC4-206ENST00000558847 PPLO60437 1756 aa-0.75□□□□□ -2.53
CASC4-206ENST00000558847 VPS13DQ5THJ4 4388 aa-0.75□□□□□ -2.53
CASC4-206ENST00000558847 RIF1Q5UIP0 2472 aaKnown RBP-0.76□□□□□ -2.53
CASC4-206ENST00000558847 UMAD1C9J7I0 102 aa-0.76□□□□□ -2.53
CASC4-206ENST00000558847 C4AP0C0L4 1744 aa-0.76□□□□□ -2.53
CASC4-206ENST00000558847 C4BP0C0L5 1744 aa-0.76□□□□□ -2.53
CASC4-206ENST00000558847 PKD1L2Q7Z442 2459 aa-0.76□□□□□ -2.53
CASC4-206ENST00000558847 CELSR3Q9NYQ7 3312 aa-0.76□□□□□ -2.53
CASC4-206ENST00000558847 AKAP9Q99996 3911 aa-0.76□□□□□ -2.53
CASC4-206ENST00000558847 DSPP15924 2871 aaKnown RBP-0.77□□□□□ -2.53
CASC4-206ENST00000558847 MAGI3Q5TCQ9 1506 aa-0.77□□□□□ -2.53
CASC4-206ENST00000558847 DNAH2Q9P225 4427 aa-0.77□□□□□ -2.53
CASC4-206ENST00000558847 MT1HL1P0DM35 61 aa-0.77□□□□□ -2.53
CASC4-206ENST00000558847 HMGA1P17096 107 aaKnown RBP-0.77□□□□□ -2.53
CASC4-206ENST00000558847 LINC00158P58513 81 aa-0.77□□□□□ -2.53
CASC4-206ENST00000558847 DEFB1P60022 68 aa-0.77□□□□□ -2.53
CASC4-206ENST00000558847 ATP5EP2Q5VTU8 51 aa-0.77□□□□□ -2.53
CASC4-206ENST00000558847 MTORP42345 2549 aa-0.77□□□□□ -2.53
CASC4-206ENST00000558847 FAM186AA6NE01 2351 aa-0.77□□□□□ -2.53
CASC4-206ENST00000558847 CUBNO60494 3623 aa-0.77□□□□□ -2.53
CASC4-206ENST00000558847 FAT3Q8TDW7 4589 aa-0.78□□□□□ -2.53
CASC4-206ENST00000558847 CCDC168Q8NDH2 2452 aa-0.78□□□□□ -2.53
CASC4-206ENST00000558847 H0YAA0 97 aa-0.78□□□□□ -2.53
CASC4-206ENST00000558847 DMXL1Q9Y485 3027 aa-0.78□□□□□ -2.53
CASC4-206ENST00000558847 KALRNO60229 2985 aa-0.78□□□□□ -2.53
CASC4-206ENST00000558847 WDR87Q6ZQQ6 2873 aa-0.78□□□□□ -2.54
CASC4-206ENST00000558847 MT1XP80297 61 aa-0.79□□□□□ -2.54
CASC4-206ENST00000558847 TDRG1Q3Y452 100 aa-0.79□□□□□ -2.54
CASC4-206ENST00000558847 LRRK2Q5S007 2527 aa-0.79□□□□□ -2.54
CASC4-206ENST00000558847 ZZEF1O43149 2961 aa-0.8□□□□□ -2.54
CASC4-206ENST00000558847 NESP48681 1621 aa-0.8□□□□□ -2.54
CASC4-206ENST00000558847 UTP20O75691 2785 aaKnown RBP-0.81□□□□□ -2.54
CASC4-206ENST00000558847 PLXNC1O60486 1568 aa-0.81□□□□□ -2.54
CASC4-206ENST00000558847 LCE6AA0A183 80 aa-0.81□□□□□ -2.54
CASC4-206ENST00000558847 A0A0C4DFX4 3053 aa-0.81□□□□□ -2.54
CASC4-206ENST00000558847 VPS13BQ7Z7G8 4022 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 DNAH9Q9NYC9 4486 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 ADIRFQ15847 76 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 DEFB110Q30KQ9 67 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 S100A13Q99584 98 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 ST20Q9HBF5 79 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 COL12A1Q99715 3063 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 DNHD1Q96M86 4753 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 TEX15Q9BXT5 2789 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 NBEAQ8NFP9 2946 aa-0.82□□□□□ -2.54
CASC4-206ENST00000558847 DOT1LQ8TEK3 1739 aa-0.83□□□□□ -2.54
CASC4-206ENST00000558847 WIZO95785 1651 aa-0.83□□□□□ -2.54
CASC4-206ENST00000558847 S4R3F8 94 aa-0.83□□□□□ -2.54
CASC4-206ENST00000558847 LYSTQ99698 3801 aa-0.83□□□□□ -2.54
CASC4-206ENST00000558847 TRIOO75962 3097 aa-0.83□□□□□ -2.54
CASC4-206ENST00000558847 ANK3Q12955 4377 aaKnown RBP-0.83□□□□□ -2.54
CASC4-206ENST00000558847 NBEAL2Q6ZNJ1 2754 aa-0.84□□□□□ -2.54
CASC4-206ENST00000558847 DIP2BQ9P265 1576 aa-0.84□□□□□ -2.54
CASC4-206ENST00000558847 ACACBO00763 2458 aa-0.84□□□□□ -2.54
CASC4-206ENST00000558847 CEP290O15078 2479 aa-0.84□□□□□ -2.54
CASC4-206ENST00000558847 PIK3C2BO00750 1634 aa-0.85□□□□□ -2.55
CASC4-206ENST00000558847 DEPDC5O75140 1603 aa-0.85□□□□□ -2.55
CASC4-206ENST00000558847 IFI6P09912 130 aa-0.85□□□□□ -2.55
CASC4-206ENST00000558847 KRTAP19-5Q3LI72 72 aa-0.85□□□□□ -2.55
CASC4-206ENST00000558847 RELNP78509 3460 aa-0.85□□□□□ -2.55
CASC4-206ENST00000558847 DNAH1Q9P2D7 4330 aa-0.85□□□□□ -2.55
CASC4-206ENST00000558847 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.85□□□□□ -2.55
CASC4-206ENST00000558847 COL6A5A8TX70 2615 aa-0.85□□□□□ -2.55
CASC4-206ENST00000558847 DNAH11Q96DT5 4516 aa-0.86□□□□□ -2.55
CASC4-206ENST00000558847 MT1EP04732 61 aa-0.86□□□□□ -2.55
CASC4-206ENST00000558847 DEFB121Q5J5C9 76 aa-0.86□□□□□ -2.55
CASC4-206ENST00000558847 CMYA5Q8N3K9 4069 aa-0.86□□□□□ -2.55
CASC4-206ENST00000558847 MAP3K1Q13233 1512 aa-0.86□□□□□ -2.55
CASC4-206ENST00000558847 GCN1Q92616 2671 aaKnown RBP-0.86□□□□□ -2.55
CASC4-206ENST00000558847 ABCA13Q86UQ4 5058 aa-0.86□□□□□ -2.55
CASC4-206ENST00000558847 RB1CC1Q8TDY2 1594 aa-0.87□□□□□ -2.55
CASC4-206ENST00000558847 A0A087WXM4 84 aa-0.87□□□□□ -2.55
CASC4-206ENST00000558847 NDUFA4O00483 81 aa-0.87□□□□□ -2.55
CASC4-206ENST00000558847 SRCAPQ6ZRS2 3230 aa-0.87□□□□□ -2.55
CASC4-206ENST00000558847 ARFGEF2Q9Y6D5 1785 aa-0.88□□□□□ -2.55
CASC4-206ENST00000558847 SACSQ9NZJ4 4579 aa-0.88□□□□□ -2.55
CASC4-206ENST00000558847 NREPQ16612 68 aa-0.88□□□□□ -2.55
CASC4-206ENST00000558847 CLPSL2Q6UWE3 100 aa-0.88□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms