RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 CDKN2A-AS1Q9UH64 79 aa1.32□□□□□ -2.2
LINC00643-204ENST00000555934 LAMA3Q16787 3333 aa1.32□□□□□ -2.2
LINC00643-204ENST00000555934 KNL1Q8NG31 2342 aa1.32□□□□□ -2.2
LINC00643-204ENST00000555934 CDH23Q9H251 3354 aa1.31□□□□□ -2.2
LINC00643-204ENST00000555934 AHCTF1Q8WYP5 2266 aa1.31□□□□□ -2.2
LINC00643-204ENST00000555934 COX6A2Q02221 97 aa1.31□□□□□ -2.2
LINC00643-204ENST00000555934 COX6B2Q6YFQ2 88 aa1.31□□□□□ -2.2
LINC00643-204ENST00000555934 LEAP2Q969E1 77 aa1.31□□□□□ -2.2
LINC00643-204ENST00000555934 DNAH14Q0VDD8 3507 aa1.3□□□□□ -2.2
LINC00643-204ENST00000555934 POLR2KP53803 58 aaKnown RBP1.3□□□□□ -2.2
LINC00643-204ENST00000555934 LINC00158P58513 81 aa1.3□□□□□ -2.2
LINC00643-204ENST00000555934 C10orf95Q9H7T3 257 aa1.3□□□□□ -2.2
LINC00643-204ENST00000555934 PRO0255Q9UI72 69 aa1.3□□□□□ -2.2
LINC00643-204ENST00000555934 CHD9Q3L8U1 2897 aa1.3□□□□□ -2.2
LINC00643-204ENST00000555934 SZT2Q5T011 3432 aa1.3□□□□□ -2.2
LINC00643-204ENST00000555934 VCANP13611 3396 aa1.29□□□□□ -2.2
LINC00643-204ENST00000555934 A8MTW9 85 aa1.29□□□□□ -2.2
LINC00643-204ENST00000555934 Q8IZM0 81 aa1.29□□□□□ -2.2
LINC00643-204ENST00000555934 DEFB108BQ8NET1 73 aa1.29□□□□□ -2.2
LINC00643-204ENST00000555934 TRANK1O15050 2925 aa1.29□□□□□ -2.2
LINC00643-204ENST00000555934 RANBP2P49792 3224 aaKnown RBP1.28□□□□□ -2.2
LINC00643-204ENST00000555934 NAV3Q8IVL0 2385 aa1.28□□□□□ -2.2
LINC00643-204ENST00000555934 M0QY20 66 aa1.27□□□□□ -2.21
LINC00643-204ENST00000555934 NDUFA1O15239 70 aa1.27□□□□□ -2.21
LINC00643-204ENST00000555934 FAM208BQ5VWN6 2430 aa1.27□□□□□ -2.21
LINC00643-204ENST00000555934 JMJD1CQ15652 2540 aa1.26□□□□□ -2.21
LINC00643-204ENST00000555934 XIRP2A4UGR9 3374 aa1.26□□□□□ -2.21
LINC00643-204ENST00000555934 FAM186AA6NE01 2351 aa1.26□□□□□ -2.21
LINC00643-204ENST00000555934 DEFB109BQ30KR1 87 aa1.26□□□□□ -2.21
LINC00643-204ENST00000555934 RPL39LQ96EH5 51 aaKnown RBP1.26□□□□□ -2.21
LINC00643-204ENST00000555934 PLCE1Q9P212 2302 aa1.26□□□□□ -2.21
LINC00643-204ENST00000555934 C5orf42Q9H799 3197 aa1.25□□□□□ -2.21
LINC00643-204ENST00000555934 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.25□□□□□ -2.21
LINC00643-204ENST00000555934 LYNX1G3V0Z9 82 aa1.25□□□□□ -2.21
LINC00643-204ENST00000555934 APELAP0DMC3 54 aa1.25□□□□□ -2.21
LINC00643-204ENST00000555934 RPL39P62891 51 aaKnown RBP1.25□□□□□ -2.21
LINC00643-204ENST00000555934 SPTBN5Q9NRC6 3674 aaKnown RBP1.25□□□□□ -2.21
LINC00643-204ENST00000555934 CACNA1AO00555 2505 aa1.25□□□□□ -2.21
LINC00643-204ENST00000555934 LAMA2P24043 3122 aaKnown RBP1.24□□□□□ -2.21
LINC00643-204ENST00000555934 USP34Q70CQ2 3546 aa1.24□□□□□ -2.21
LINC00643-204ENST00000555934 H0YAA0 97 aa1.24□□□□□ -2.21
LINC00643-204ENST00000555934 LELP1Q5T871 98 aa1.24□□□□□ -2.21
LINC00643-204ENST00000555934 DEFB124Q8NES8 71 aa1.24□□□□□ -2.21
LINC00643-204ENST00000555934 LINC00308Q8TCZ7 52 aa1.24□□□□□ -2.21
LINC00643-204ENST00000555934 RHPN1-AS1Q9BWJ2 59 aa1.24□□□□□ -2.21
LINC00643-204ENST00000555934 PKD1L2Q7Z442 2459 aa1.24□□□□□ -2.21
LINC00643-204ENST00000555934 SPEGQ15772 3267 aa1.23□□□□□ -2.21
LINC00643-204ENST00000555934 A0A0D9SG42 100 aa1.23□□□□□ -2.21
LINC00643-204ENST00000555934 SPRR1AP35321 89 aa1.23□□□□□ -2.21
LINC00643-204ENST00000555934 Q5VSD8 79 aa1.23□□□□□ -2.21
LINC00643-204ENST00000555934 APLNQ9ULZ1 77 aa1.23□□□□□ -2.21
LINC00643-204ENST00000555934 MYO15AQ9UKN7 3530 aa1.23□□□□□ -2.21
LINC00643-204ENST00000555934 CNOT1A5YKK6 2376 aaKnown RBP1.22□□□□□ -2.21
LINC00643-204ENST00000555934 REV3LO60673 3130 aa1.22□□□□□ -2.21
LINC00643-204ENST00000555934 WDFY3Q8IZQ1 3526 aa1.22□□□□□ -2.21
LINC00643-204ENST00000555934 ANKHD1Q8IWZ3 2542 aaKnown RBP1.22□□□□□ -2.21
LINC00643-204ENST00000555934 PKDREJQ9NTG1 2253 aa1.21□□□□□ -2.22
LINC00643-204ENST00000555934 H3BUX3 64 aa1.21□□□□□ -2.22
LINC00643-204ENST00000555934 H1FX-AS1Q4G0G2 97 aa1.21□□□□□ -2.22
LINC00643-204ENST00000555934 CACNA1HO95180 2353 aa1.21□□□□□ -2.22
LINC00643-204ENST00000555934 WNK2Q9Y3S1 2297 aa1.2□□□□□ -2.22
LINC00643-204ENST00000555934 FREM2Q5SZK8 3169 aa1.2□□□□□ -2.22
LINC00643-204ENST00000555934 CEP290O15078 2479 aa1.2□□□□□ -2.22
LINC00643-204ENST00000555934 DEFB131AP59861 70 aa1.2□□□□□ -2.22
LINC00643-204ENST00000555934 DEFB105AQ8NG35 78 aa1.2□□□□□ -2.22
LINC00643-204ENST00000555934 C6orf48Q9UBA6 75 aa1.2□□□□□ -2.22
LINC00643-204ENST00000555934 LAMA1P25391 3075 aa1.2□□□□□ -2.22
LINC00643-204ENST00000555934 FBN2P35556 2912 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 NOTCH1P46531 2555 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 EYSQ5T1H1 3165 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 APC2O95996 2303 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 SPRR1BP22528 89 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 DEFB1P60022 68 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 WFDC13Q8IUB5 93 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 VPS13AQ96RL7 3174 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 DOPEY2Q9Y3R5 2298 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 BSNQ9UPA5 3926 aa1.19□□□□□ -2.22
LINC00643-204ENST00000555934 WDFY4Q6ZS81 3184 aa1.18□□□□□ -2.22
LINC00643-204ENST00000555934 PRUNE2Q8WUY3 3088 aa1.18□□□□□ -2.22
LINC00643-204ENST00000555934 SPENQ96T58 3664 aaKnown RBP1.18□□□□□ -2.22
LINC00643-204ENST00000555934 PTPRZ1P23471 2315 aaPredicted RBP1.18□□□□□ -2.22
LINC00643-204ENST00000555934 COL6A3P12111 3177 aa1.18□□□□□ -2.22
LINC00643-204ENST00000555934 DCHS1Q96JQ0 3298 aa1.18□□□□□ -2.22
LINC00643-204ENST00000555934 ACACAQ13085 2346 aa1.17□□□□□ -2.22
LINC00643-204ENST00000555934 TRIOO75962 3097 aa1.17□□□□□ -2.22
LINC00643-204ENST00000555934 MUC3AQ02505 3323 aa1.17□□□□□ -2.22
LINC00643-204ENST00000555934 CELSR3Q9NYQ7 3312 aa1.17□□□□□ -2.22
LINC00643-204ENST00000555934 ZFHX4Q86UP3 3567 aa1.17□□□□□ -2.22
LINC00643-204ENST00000555934 NCOR1O75376 2440 aa1.17□□□□□ -2.22
LINC00643-204ENST00000555934 TPRP12270 2363 aaKnown RBP1.17□□□□□ -2.22
LINC00643-204ENST00000555934 LOC400499M0QZD8 3231 aa1.17□□□□□ -2.22
LINC00643-204ENST00000555934 H3BNG1 76 aa1.17□□□□□ -2.22
LINC00643-204ENST00000555934 PTPRQQ9UMZ3 2332 aa1.17□□□□□ -2.22
LINC00643-204ENST00000555934 CEP250Q9BV73 2442 aa1.16□□□□□ -2.22
LINC00643-204ENST00000555934 CFAP54Q96N23 3096 aa1.16□□□□□ -2.22
LINC00643-204ENST00000555934 IGLV5-48A0A075B6I7 105 aa1.16□□□□□ -2.22
LINC00643-204ENST00000555934 ZNF469Q96JG9 3925 aaPredicted RBP1.16□□□□□ -2.22
LINC00643-204ENST00000555934 MAP1BP46821 2468 aaKnown RBP1.16□□□□□ -2.22
LINC00643-204ENST00000555934 ADGRG4Q8IZF6 3080 aa1.16□□□□□ -2.22
LINC00643-204ENST00000555934 EP300Q09472 2414 aaPredicted RBP1.16□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms