RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 CAMK2N1Q7Z7J9 78 aa5.06□□□□□ -1.6
SYNE2-220ENST00000555612 CYP4F30PQ9H0H9 118 aa5.06□□□□□ -1.6
SYNE2-220ENST00000555612 TNRC18O15417 2968 aaPredicted RBP5.06□□□□□ -1.6
SYNE2-220ENST00000555612 TEX15Q9BXT5 2789 aa5.05□□□□□ -1.6
SYNE2-220ENST00000555612 BAHCC1Q9P281 2608 aa5.05□□□□□ -1.6
SYNE2-220ENST00000555612 A0A0C4DFX4 3053 aa5.05□□□□□ -1.6
SYNE2-220ENST00000555612 TRIOO75962 3097 aa5.04□□□□□ -1.6
SYNE2-220ENST00000555612 COL6A5A8TX70 2615 aa5.04□□□□□ -1.6
SYNE2-220ENST00000555612 SEC61BP60468 96 aaKnown RBP5.03□□□□□ -1.6
SYNE2-220ENST00000555612 ZCCHC13Q8WW36 166 aaKnown RBP5.02□□□□□ -1.61
SYNE2-220ENST00000555612 LAMA3Q16787 3333 aa5.02□□□□□ -1.61
SYNE2-220ENST00000555612 CDC42SE1Q9NRR8 79 aa5.02□□□□□ -1.61
SYNE2-220ENST00000555612 CSAG1Q6PB30 78 aa5.01□□□□□ -1.61
SYNE2-220ENST00000555612 NSD1Q96L73 2696 aaPredicted RBP5□□□□□ -1.61
SYNE2-220ENST00000555612 HRES1P13985 223 aa5□□□□□ -1.61
SYNE2-220ENST00000555612 Q8NDZ9 215 aa4.99□□□□□ -1.61
SYNE2-220ENST00000555612 S4R3F8 94 aa4.99□□□□□ -1.61
SYNE2-220ENST00000555612 SPANXA2-OT1Q8N9U9 137 aa4.99□□□□□ -1.61
SYNE2-220ENST00000555612 PLAC4Q8WY50 150 aa4.99□□□□□ -1.61
SYNE2-220ENST00000555612 SPRR1AP35321 89 aa4.97□□□□□ -1.61
SYNE2-220ENST00000555612 OCR1Q9BZK8 76 aa4.97□□□□□ -1.61
SYNE2-220ENST00000555612 ITPR2Q14571 2701 aa4.97□□□□□ -1.61
SYNE2-220ENST00000555612 KMT2BQ9UMN6 2715 aaPredicted RBP4.96□□□□□ -1.62
SYNE2-220ENST00000555612 MMP24-AS1A0A0U1RRL7 71 aa4.96□□□□□ -1.62
SYNE2-220ENST00000555612 Q8N9P0 234 aaPredicted RBP4.96□□□□□ -1.62
SYNE2-220ENST00000555612 MGAQ8IWI9 3026 aa4.96□□□□□ -1.62
SYNE2-220ENST00000555612 SPINK7P58062 85 aa4.96□□□□□ -1.62
SYNE2-220ENST00000555612 XIRP2A4UGR9 3374 aa4.95□□□□□ -1.62
SYNE2-220ENST00000555612 LUZP6Q538Z0 58 aa4.95□□□□□ -1.62
SYNE2-220ENST00000555612 A0A1B0GU33 70 aa4.94□□□□□ -1.62
SYNE2-220ENST00000555612 MKI67P46013 3256 aaKnown RBP4.94□□□□□ -1.62
SYNE2-220ENST00000555612 BRCA2P51587 3418 aa4.94□□□□□ -1.62
SYNE2-220ENST00000555612 NOTCH1P46531 2555 aa4.93□□□□□ -1.62
SYNE2-220ENST00000555612 KRTAP26-1Q6PEX3 210 aa4.93□□□□□ -1.62
SYNE2-220ENST00000555612 SPRR1BP22528 89 aa4.93□□□□□ -1.62
SYNE2-220ENST00000555612 Q6ZR54 194 aa4.92□□□□□ -1.62
SYNE2-220ENST00000555612 NBEAL1Q6ZS30 2694 aa4.92□□□□□ -1.62
SYNE2-220ENST00000555612 PANO1I0J062 215 aa4.92□□□□□ -1.62
SYNE2-220ENST00000555612 CDH23Q9H251 3354 aa4.92□□□□□ -1.62
SYNE2-220ENST00000555612 KALRNO60229 2985 aa4.92□□□□□ -1.62
SYNE2-220ENST00000555612 Q5W150 140 aa4.92□□□□□ -1.62
SYNE2-220ENST00000555612 Q5XG85 94 aa4.92□□□□□ -1.62
SYNE2-220ENST00000555612 DNAH14Q0VDD8 3507 aa4.92□□□□□ -1.62
SYNE2-220ENST00000555612 R4GN34 69 aa4.91□□□□□ -1.62
SYNE2-220ENST00000555612 OXTP01178 125 aa4.91□□□□□ -1.62
SYNE2-220ENST00000555612 FLG2Q5D862 2391 aaPredicted RBP4.91□□□□□ -1.62
SYNE2-220ENST00000555612 NIPBLQ6KC79 2804 aaeCLIP4.91□□□□□ -1.62
SYNE2-220ENST00000555612 CFAP54Q96N23 3096 aa4.91□□□□□ -1.62
SYNE2-220ENST00000555612 LAMA2P24043 3122 aaKnown RBP4.9□□□□□ -1.62
SYNE2-220ENST00000555612 Q1T7F1 81 aa4.9□□□□□ -1.62
SYNE2-220ENST00000555612 LINC00472Q9H8W2 130 aa4.89□□□□□ -1.63
SYNE2-220ENST00000555612 LINC00483Q53H64 154 aa4.89□□□□□ -1.63
SYNE2-220ENST00000555612 FP248Q71RG6 208 aaPredicted RBP4.87□□□□□ -1.63
SYNE2-220ENST00000555612 CYSTM1Q9H1C7 97 aa4.87□□□□□ -1.63
SYNE2-220ENST00000555612 APCP25054 2843 aa4.87□□□□□ -1.63
SYNE2-220ENST00000555612 A0A087X002 238 aa4.85□□□□□ -1.63
SYNE2-220ENST00000555612 CELSR3Q9NYQ7 3312 aa4.84□□□□□ -1.63
SYNE2-220ENST00000555612 DMAC1Q96GE9 116 aa4.84□□□□□ -1.64
SYNE2-220ENST00000555612 HIVEP1P15822 2718 aa4.83□□□□□ -1.64
SYNE2-220ENST00000555612 STAB2Q8WWQ8 2551 aa4.83□□□□□ -1.64
SYNE2-220ENST00000555612 M0QZ58 72 aa4.83□□□□□ -1.64
SYNE2-220ENST00000555612 WDFY4Q6ZS81 3184 aa4.82□□□□□ -1.64
SYNE2-220ENST00000555612 LCA10Q71F78 164 aa4.81□□□□□ -1.64
SYNE2-220ENST00000555612 KTN1-AS1Q86SY8 53 aa4.81□□□□□ -1.64
SYNE2-220ENST00000555612 SZT2Q5T011 3432 aa4.8□□□□□ -1.64
SYNE2-220ENST00000555612 FREM2Q5SZK8 3169 aa4.79□□□□□ -1.64
SYNE2-220ENST00000555612 KRTAP21-3Q3LHN1 58 aa4.79□□□□□ -1.64
SYNE2-220ENST00000555612 MAP1AP78559 2803 aaPredicted RBP4.79□□□□□ -1.64
SYNE2-220ENST00000555612 KRTAP4-16G5E9R7 235 aaPredicted RBP4.78□□□□□ -1.64
SYNE2-220ENST00000555612 PRUNE2Q8WUY3 3088 aa4.78□□□□□ -1.64
SYNE2-220ENST00000555612 Q6ZRN7 208 aaPredicted RBP4.78□□□□□ -1.64
SYNE2-220ENST00000555612 ATMQ13315 3056 aa4.77□□□□□ -1.65
SYNE2-220ENST00000555612 UNC80Q8N2C7 3258 aa4.76□□□□□ -1.65
SYNE2-220ENST00000555612 Q75L30 129 aa4.76□□□□□ -1.65
SYNE2-220ENST00000555612 LINC01558Q9Y6Z2 57 aa4.76□□□□□ -1.65
SYNE2-220ENST00000555612 NBEAL2Q6ZNJ1 2754 aa4.76□□□□□ -1.65
SYNE2-220ENST00000555612 ADM2Q7Z4H4 148 aa4.76□□□□□ -1.65
SYNE2-220ENST00000555612 ZANQ9Y493 2812 aa4.76□□□□□ -1.65
SYNE2-220ENST00000555612 FRYQ5TBA9 3013 aa4.75□□□□□ -1.65
SYNE2-220ENST00000555612 ZZEF1O43149 2961 aa4.75□□□□□ -1.65
SYNE2-220ENST00000555612 KRTAP11-1Q8IUC1 163 aa4.74□□□□□ -1.65
SYNE2-220ENST00000555612 ASH1LQ9NR48 2969 aaKnown RBP4.74□□□□□ -1.65
SYNE2-220ENST00000555612 DMBT1Q9UGM3 2413 aaPredicted RBP4.74□□□□□ -1.65
SYNE2-220ENST00000555612 PRAC1Q96KF2 57 aa4.73□□□□□ -1.65
SYNE2-220ENST00000555612 DMXL2Q8TDJ6 3036 aa4.72□□□□□ -1.65
SYNE2-220ENST00000555612 VPS13AQ96RL7 3174 aa4.72□□□□□ -1.65
SYNE2-220ENST00000555612 KRTAP29-1A8MX34 341 aaPredicted RBP4.71□□□□□ -1.65
SYNE2-220ENST00000555612 FRYLO94915 3013 aa4.71□□□□□ -1.65
SYNE2-220ENST00000555612 NBEAQ8NFP9 2946 aa4.71□□□□□ -1.66
SYNE2-220ENST00000555612 HRNRQ86YZ3 2850 aaPredicted RBP4.71□□□□□ -1.66
SYNE2-220ENST00000555612 RPL37P61927 97 aaKnown RBP4.71□□□□□ -1.66
SYNE2-220ENST00000555612 REV3LO60673 3130 aa4.71□□□□□ -1.66
SYNE2-220ENST00000555612 USP34Q70CQ2 3546 aa4.7□□□□□ -1.66
SYNE2-220ENST00000555612 NOTCH2NLQ7Z3S9 236 aa4.7□□□□□ -1.66
SYNE2-220ENST00000555612 H1FX-AS1Q4G0G2 97 aa4.69□□□□□ -1.66
SYNE2-220ENST00000555612 COL12A1Q99715 3063 aa4.69□□□□□ -1.66
SYNE2-220ENST00000555612 TACC2O95359 2948 aa4.69□□□□□ -1.66
SYNE2-220ENST00000555612 KRTAP13-2Q52LG2 175 aa4.68□□□□□ -1.66
SYNE2-220ENST00000555612 Q5VV11 94 aa4.68□□□□□ -1.66
SYNE2-220ENST00000555612 RPS29P62273 56 aaKnown RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms