RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-208ENST00000553289 LINC01558Q9Y6Z2 57 aa7.12□□□□□ -1.27
SYNE2-208ENST00000553289 Q8NDZ9 215 aa7.12□□□□□ -1.27
SYNE2-208ENST00000553289 Q6ZSA8 131 aa7.12□□□□□ -1.27
SYNE2-208ENST00000553289 FLNAP21333 2647 aaKnown RBP7.12□□□□□ -1.27
SYNE2-208ENST00000553289 A0A1B0GU33 70 aa7.11□□□□□ -1.27
SYNE2-208ENST00000553289 ZCCHC13Q8WW36 166 aaKnown RBP7.1□□□□□ -1.27
SYNE2-208ENST00000553289 LINC01554Q52M75 96 aa7.09□□□□□ -1.27
SYNE2-208ENST00000553289 AKAP13Q12802 2813 aa7.09□□□□□ -1.27
SYNE2-208ENST00000553289 LINC00472Q9H8W2 130 aa7.09□□□□□ -1.27
SYNE2-208ENST00000553289 HELZ2Q9BYK8 2649 aaKnown RBP7.09□□□□□ -1.28
SYNE2-208ENST00000553289 ITPR3Q14573 2671 aa7.08□□□□□ -1.28
SYNE2-208ENST00000553289 CFAP46Q8IYW2 2715 aa7.07□□□□□ -1.28
SYNE2-208ENST00000553289 Q8N9P0 234 aaPredicted RBP7.07□□□□□ -1.28
SYNE2-208ENST00000553289 VPS13AQ96RL7 3174 aa7.06□□□□□ -1.28
SYNE2-208ENST00000553289 KRTAP26-1Q6PEX3 210 aa7.04□□□□□ -1.28
SYNE2-208ENST00000553289 DSPP15924 2871 aaKnown RBP7.03□□□□□ -1.28
SYNE2-208ENST00000553289 Q5XG85 94 aa7.03□□□□□ -1.28
SYNE2-208ENST00000553289 Q5W150 140 aa7.02□□□□□ -1.29
SYNE2-208ENST00000553289 DMAC1Q96GE9 116 aa7.02□□□□□ -1.29
SYNE2-208ENST00000553289 ATRQ13535 2644 aa7.01□□□□□ -1.29
SYNE2-208ENST00000553289 LUZP6Q538Z0 58 aa7.01□□□□□ -1.29
SYNE2-208ENST00000553289 LAMA1P25391 3075 aa7.01□□□□□ -1.29
SYNE2-208ENST00000553289 FP248Q71RG6 208 aaPredicted RBP7□□□□□ -1.29
SYNE2-208ENST00000553289 CSAG1Q6PB30 78 aa6.99□□□□□ -1.29
SYNE2-208ENST00000553289 CYSTM1Q9H1C7 97 aa6.98□□□□□ -1.29
SYNE2-208ENST00000553289 CAMK2N1Q7Z7J9 78 aa6.97□□□□□ -1.29
SYNE2-208ENST00000553289 S4R3F8 94 aa6.97□□□□□ -1.29
SYNE2-208ENST00000553289 LINC00483Q53H64 154 aa6.96□□□□□ -1.3
SYNE2-208ENST00000553289 VCANP13611 3396 aa6.96□□□□□ -1.3
SYNE2-208ENST00000553289 KRTAP1-5Q9BYS1 174 aa6.96□□□□□ -1.3
SYNE2-208ENST00000553289 Q5VV11 94 aa6.96□□□□□ -1.3
SYNE2-208ENST00000553289 MAST4O15021 2626 aa6.94□□□□□ -1.3
SYNE2-208ENST00000553289 IGSF10Q6WRI0 2623 aa6.93□□□□□ -1.3
SYNE2-208ENST00000553289 SPINK7P58062 85 aa6.93□□□□□ -1.3
SYNE2-208ENST00000553289 DNAH14Q0VDD8 3507 aa6.92□□□□□ -1.3
SYNE2-208ENST00000553289 KRTAP4-16G5E9R7 235 aaPredicted RBP6.91□□□□□ -1.3
SYNE2-208ENST00000553289 TNRC18O15417 2968 aaPredicted RBP6.89□□□□□ -1.31
SYNE2-208ENST00000553289 Q6ZR54 194 aa6.89□□□□□ -1.31
SYNE2-208ENST00000553289 COL6A3P12111 3177 aa6.88□□□□□ -1.31
SYNE2-208ENST00000553289 CELSR3Q9NYQ7 3312 aa6.87□□□□□ -1.31
SYNE2-208ENST00000553289 MAP1AP78559 2803 aaPredicted RBP6.87□□□□□ -1.31
SYNE2-208ENST00000553289 SEC61BP60468 96 aaKnown RBP6.87□□□□□ -1.31
SYNE2-208ENST00000553289 KRTAP29-1A8MX34 341 aaPredicted RBP6.84□□□□□ -1.31
SYNE2-208ENST00000553289 FRYQ5TBA9 3013 aa6.84□□□□□ -1.31
SYNE2-208ENST00000553289 M0R2T5 61 aa6.84□□□□□ -1.31
SYNE2-208ENST00000553289 KRTAP10-1P60331 282 aa6.84□□□□□ -1.31
SYNE2-208ENST00000553289 UNC79Q9P2D8 2635 aa6.83□□□□□ -1.32
SYNE2-208ENST00000553289 SPTBN5Q9NRC6 3674 aaKnown RBP6.83□□□□□ -1.32
SYNE2-208ENST00000553289 LCE6AA0A183 80 aa6.83□□□□□ -1.32
SYNE2-208ENST00000553289 R4GN34 69 aa6.82□□□□□ -1.32
SYNE2-208ENST00000553289 RPL37P61927 97 aaKnown RBP6.81□□□□□ -1.32
SYNE2-208ENST00000553289 Q5VSD8 79 aa6.8□□□□□ -1.32
SYNE2-208ENST00000553289 PRAC1Q96KF2 57 aa6.8□□□□□ -1.32
SYNE2-208ENST00000553289 REV3LO60673 3130 aa6.8□□□□□ -1.32
SYNE2-208ENST00000553289 OXTP01178 125 aa6.8□□□□□ -1.32
SYNE2-208ENST00000553289 KRTAP10-2P60368 255 aa6.8□□□□□ -1.32
SYNE2-208ENST00000553289 ASB16-AS1Q495Z4 193 aa6.79□□□□□ -1.32
SYNE2-208ENST00000553289 TEP1Q99973 2627 aaKnown RBP6.79□□□□□ -1.32
SYNE2-208ENST00000553289 FRYLO94915 3013 aa6.78□□□□□ -1.32
SYNE2-208ENST00000553289 STAB1Q9NY15 2570 aa6.78□□□□□ -1.32
SYNE2-208ENST00000553289 H1FX-AS1Q4G0G2 97 aa6.78□□□□□ -1.32
SYNE2-208ENST00000553289 FLNCQ14315 2725 aa6.78□□□□□ -1.32
SYNE2-208ENST00000553289 BOD1L1Q8NFC6 3051 aa6.77□□□□□ -1.33
SYNE2-208ENST00000553289 ROMO1P60602 79 aa6.76□□□□□ -1.33
SYNE2-208ENST00000553289 EYSQ5T1H1 3165 aa6.76□□□□□ -1.33
SYNE2-208ENST00000553289 DMXL2Q8TDJ6 3036 aa6.76□□□□□ -1.33
SYNE2-208ENST00000553289 CHD6Q8TD26 2715 aa6.75□□□□□ -1.33
SYNE2-208ENST00000553289 PANO1I0J062 215 aa6.75□□□□□ -1.33
SYNE2-208ENST00000553289 ATMQ13315 3056 aa6.75□□□□□ -1.33
SYNE2-208ENST00000553289 RPS29P62273 56 aaKnown RBP6.73□□□□□ -1.33
SYNE2-208ENST00000553289 TEX15Q9BXT5 2789 aa6.72□□□□□ -1.33
SYNE2-208ENST00000553289 ADGRG4Q8IZF6 3080 aa6.72□□□□□ -1.33
SYNE2-208ENST00000553289 NBEAQ8NFP9 2946 aa6.7□□□□□ -1.34
SYNE2-208ENST00000553289 FREM2Q5SZK8 3169 aa6.7□□□□□ -1.34
SYNE2-208ENST00000553289 NBEAL1Q6ZS30 2694 aa6.69□□□□□ -1.34
SYNE2-208ENST00000553289 A0A087X002 238 aa6.69□□□□□ -1.34
SYNE2-208ENST00000553289 A0A0A0MQY5 61 aa6.69□□□□□ -1.34
SYNE2-208ENST00000553289 COL6A5A8TX70 2615 aa6.68□□□□□ -1.34
SYNE2-208ENST00000553289 COL12A1Q99715 3063 aa6.68□□□□□ -1.34
SYNE2-208ENST00000553289 SPEGQ15772 3267 aa6.68□□□□□ -1.34
SYNE2-208ENST00000553289 M0QZ58 72 aa6.68□□□□□ -1.34
SYNE2-208ENST00000553289 SETXQ7Z333 2677 aaKnown RBP6.67□□□□□ -1.34
SYNE2-208ENST00000553289 SPATA8Q6RVD6 105 aa6.65□□□□□ -1.34
SYNE2-208ENST00000553289 Q6ZRN7 208 aaPredicted RBP6.65□□□□□ -1.34
SYNE2-208ENST00000553289 DMXL1Q9Y485 3027 aa6.65□□□□□ -1.34
SYNE2-208ENST00000553289 GCN1Q92616 2671 aaKnown RBP6.64□□□□□ -1.35
SYNE2-208ENST00000553289 NOTCH1P46531 2555 aa6.62□□□□□ -1.35
SYNE2-208ENST00000553289 UBR5O95071 2799 aaPredicted RBP6.62□□□□□ -1.35
SYNE2-208ENST00000553289 NOTCH2NLQ7Z3S9 236 aa6.62□□□□□ -1.35
SYNE2-208ENST00000553289 ADM2Q7Z4H4 148 aa6.62□□□□□ -1.35
SYNE2-208ENST00000553289 LRBAP50851 2863 aa6.61□□□□□ -1.35
SYNE2-208ENST00000553289 KALRNO60229 2985 aa6.61□□□□□ -1.35
SYNE2-208ENST00000553289 KRTAP11-1Q8IUC1 163 aa6.6□□□□□ -1.35
SYNE2-208ENST00000553289 KRTAP7-1Q8IUC3 87 aa6.6□□□□□ -1.35
SYNE2-208ENST00000553289 ITPR1Q14643 2758 aa6.59□□□□□ -1.35
SYNE2-208ENST00000553289 KRTAP13-1Q8IUC0 172 aa6.59□□□□□ -1.35
SYNE2-208ENST00000553289 H3BS24 57 aa6.59□□□□□ -1.35
SYNE2-208ENST00000553289 BAHCC1Q9P281 2608 aa6.59□□□□□ -1.36
SYNE2-208ENST00000553289 FLG2Q5D862 2391 aaPredicted RBP6.58□□□□□ -1.36
SYNE2-208ENST00000553289 TACC2O95359 2948 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms