RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 H3BUT2 72 aa12.46□□□□□ -0.42
VPS29-206ENST00000549578 C9orf118A6NHY6 69 aa12.44□□□□□ -0.42
VPS29-206ENST00000549578 MOBPQ13875 183 aa12.43□□□□□ -0.42
VPS29-206ENST00000549578 SMIM29Q86T20 159 aa12.43□□□□□ -0.42
VPS29-206ENST00000549578 COL5A1-AS1Q5SY13 56 aa12.42□□□□□ -0.42
VPS29-206ENST00000549578 LAMTOR3Q9UHA4 124 aa12.42□□□□□ -0.42
VPS29-206ENST00000549578 LST1O00453 97 aa12.42□□□□□ -0.42
VPS29-206ENST00000549578 DNAL4O96015 105 aa12.42□□□□□ -0.42
VPS29-206ENST00000549578 C9orf153Q5TBE3 101 aa12.41□□□□□ -0.42
VPS29-206ENST00000549578 TCL1BO95988 128 aa12.39□□□□□ -0.43
VPS29-206ENST00000549578 OCIAD2Q56VL3 154 aa12.39□□□□□ -0.43
VPS29-206ENST00000549578 TRACP01848 142 aa12.38□□□□□ -0.43
VPS29-206ENST00000549578 LYRM7Q5U5X0 104 aa12.37□□□□□ -0.43
VPS29-206ENST00000549578 A0A1W2PPM0 123 aa12.37□□□□□ -0.43
VPS29-206ENST00000549578 Q8NBF4 154 aa12.37□□□□□ -0.43
VPS29-206ENST00000549578 PPDPFLQ8WWR9 84 aa12.37□□□□□ -0.43
VPS29-206ENST00000549578 ATXN8Q156A1 80 aa12.35□□□□□ -0.43
VPS29-206ENST00000549578 ORMDL1Q9P0S3 153 aa12.35□□□□□ -0.43
VPS29-206ENST00000549578 SSBP3-AS1Q7Z2R9 100 aa12.34□□□□□ -0.43
VPS29-206ENST00000549578 FABP2P12104 132 aa12.33□□□□□ -0.44
VPS29-206ENST00000549578 LINC00304Q8N9R0 145 aa12.33□□□□□ -0.44
VPS29-206ENST00000549578 F8WEM9 126 aa12.32□□□□□ -0.44
VPS29-206ENST00000549578 GHRHP01286 108 aa12.32□□□□□ -0.44
VPS29-206ENST00000549578 HERC1Q15751 4861 aa12.32□□□□□ -0.44
VPS29-206ENST00000549578 TRBV20-1A0A075B6N2 111 aa12.31□□□□□ -0.44
VPS29-206ENST00000549578 NDUFV3P56181 108 aaKnown RBP12.28□□□□□ -0.44
VPS29-206ENST00000549578 A0A0G2JQZ4 141 aa12.27□□□□□ -0.45
VPS29-206ENST00000549578 TMEM256-PLSCR3K7ERE1 68 aa12.27□□□□□ -0.45
VPS29-206ENST00000549578 H3BQ85 93 aa12.26□□□□□ -0.45
VPS29-206ENST00000549578 C4orf48Q5BLP8 95 aa12.26□□□□□ -0.45
VPS29-206ENST00000549578 SPCS1Q9Y6A9 102 aa12.25□□□□□ -0.45
VPS29-206ENST00000549578 IGLV8-61A0A075B6I0 122 aa12.24□□□□□ -0.45
VPS29-206ENST00000549578 BAALC-AS2P0C853 105 aa12.24□□□□□ -0.45
VPS29-206ENST00000549578 SPAG11AQ6PDA7 123 aa12.23□□□□□ -0.45
VPS29-206ENST00000549578 C9JAW5 83 aa12.22□□□□□ -0.45
VPS29-206ENST00000549578 A0A1B0GV72 72 aa12.21□□□□□ -0.45
VPS29-206ENST00000549578 H3BMG7 143 aa12.21□□□□□ -0.45
VPS29-206ENST00000549578 HRCT1Q6UXD1 115 aa12.21□□□□□ -0.45
VPS29-206ENST00000549578 UBE2V1Q13404 147 aa12.21□□□□□ -0.46
VPS29-206ENST00000549578 IGFL1Q6UW32 110 aa12.2□□□□□ -0.46
VPS29-206ENST00000549578 Q6JHZ5 121 aa12.19□□□□□ -0.46
VPS29-206ENST00000549578 SPINK1P00995 79 aa12.18□□□□□ -0.46
VPS29-206ENST00000549578 MTURNQ8N3F0 131 aa12.18□□□□□ -0.46
VPS29-206ENST00000549578 ANKRD29Q8N6D5 301 aa12.18□□□□□ -0.46
VPS29-206ENST00000549578 K7EP34 96 aa12.15□□□□□ -0.46
VPS29-206ENST00000549578 CD164Q04900 197 aa12.14□□□□□ -0.47
VPS29-206ENST00000549578 RPS29P62273 56 aaKnown RBP12.11□□□□□ -0.47
VPS29-206ENST00000549578 H3BT86 120 aa12.1□□□□□ -0.47
VPS29-206ENST00000549578 RETNLBQ9BQ08 111 aa12.1□□□□□ -0.47
VPS29-206ENST00000549578 RBM3P98179 157 aaKnown RBP12.08□□□□□ -0.48
VPS29-206ENST00000549578 GTF2H5Q6ZYL4 71 aa12.07□□□□□ -0.48
VPS29-206ENST00000549578 TRBV7-7A0A0K0K1E9 115 aa12.05□□□□□ -0.48
VPS29-206ENST00000549578 LIMD2Q9BT23 127 aa12.05□□□□□ -0.48
VPS29-206ENST00000549578 TRBV7-4A0A0J9YYF1 115 aa12.04□□□□□ -0.48
VPS29-206ENST00000549578 A0A1W2PNM2 257 aa12.04□□□□□ -0.48
VPS29-206ENST00000549578 SMCPP49901 116 aaPredicted RBP12.04□□□□□ -0.48
VPS29-206ENST00000549578 JMJD7-PLA2G4BH0Y9G9 81 aa12.03□□□□□ -0.48
VPS29-206ENST00000549578 TEN1Q86WV5 123 aa12.03□□□□□ -0.48
VPS29-206ENST00000549578 DSCR8Q96T75 97 aa12.03□□□□□ -0.48
VPS29-206ENST00000549578 PRO0461Q9UI25 63 aa12.03□□□□□ -0.48
VPS29-206ENST00000549578 HMCN2Q8NDA2 5059 aa12.03□□□□□ -0.48
VPS29-206ENST00000549578 Q6Q795 121 aa12.02□□□□□ -0.48
VPS29-206ENST00000549578 PRR4Q16378 134 aa12.01□□□□□ -0.49
VPS29-206ENST00000549578 CCKP06307 115 aa12□□□□□ -0.49
VPS29-206ENST00000549578 OBSCN-AS1Q96MR7 158 aa12□□□□□ -0.49
VPS29-206ENST00000549578 Q5XG85 94 aa11.99□□□□□ -0.49
VPS29-206ENST00000549578 C14orf132Q9NPU4 83 aa11.98□□□□□ -0.49
VPS29-206ENST00000549578 VPS25Q9BRG1 176 aa11.97□□□□□ -0.49
VPS29-206ENST00000549578 A0A087WSZ3 146 aa11.96□□□□□ -0.5
VPS29-206ENST00000549578 A0A1B0GV90 55 aa11.95□□□□□ -0.5
VPS29-206ENST00000549578 LOC110117498A0A087WWA1 95 aa11.94□□□□□ -0.5
VPS29-206ENST00000549578 Q6ZQT0 140 aa11.94□□□□□ -0.5
VPS29-206ENST00000549578 F8W1H4 67 aa11.91□□□□□ -0.5
VPS29-206ENST00000549578 C1orf195Q5TG92 126 aa11.91□□□□□ -0.5
VPS29-206ENST00000549578 FP248Q71RG6 208 aaPredicted RBP11.91□□□□□ -0.5
VPS29-206ENST00000549578 IGLV7-46A0A075B6I9 117 aa11.9□□□□□ -0.5
VPS29-206ENST00000549578 PDE6GP18545 87 aa11.9□□□□□ -0.5
VPS29-206ENST00000549578 ASB16-AS1Q495Z4 193 aa11.9□□□□□ -0.5
VPS29-206ENST00000549578 SS18L2Q9UHA2 77 aa11.9□□□□□ -0.5
VPS29-206ENST00000549578 LPAP08519 4548 aa11.85□□□□□ -0.51
VPS29-206ENST00000549578 ETDBQ3ZM63 59 aa11.82□□□□□ -0.52
VPS29-206ENST00000549578 LRP2P98164 4655 aa11.8□□□□□ -0.52
VPS29-206ENST00000549578 Q96NJ1 140 aa11.8□□□□□ -0.52
VPS29-206ENST00000549578 C21orf62-AS1Q17RA5 79 aa11.78□□□□□ -0.52
VPS29-206ENST00000549578 TPRXLQ17RH7 258 aa11.77□□□□□ -0.52
VPS29-206ENST00000549578 A0A1B0GW54 56 aa11.76□□□□□ -0.53
VPS29-206ENST00000549578 KRTAP13-3Q3SY46 172 aa11.76□□□□□ -0.53
VPS29-206ENST00000549578 DEFB116Q30KQ4 102 aa11.74□□□□□ -0.53
VPS29-206ENST00000549578 LINC00472Q9H8W2 130 aa11.74□□□□□ -0.53
VPS29-206ENST00000549578 IGKV4-1P06312 121 aa11.7□□□□□ -0.54
VPS29-206ENST00000549578 SIGMAR1Q99720 223 aa11.7□□□□□ -0.54
VPS29-206ENST00000549578 CDIP1Q9H305 208 aa11.7□□□□□ -0.54
VPS29-206ENST00000549578 C9orf92A6NGG3 77 aa11.69□□□□□ -0.54
VPS29-206ENST00000549578 NREPQ16612 68 aa11.66□□□□□ -0.54
VPS29-206ENST00000549578 LINC00846Q9NV44 126 aa11.6□□□□□ -0.55
VPS29-206ENST00000549578 UBR4Q5T4S7 5183 aa11.6□□□□□ -0.55
VPS29-206ENST00000549578 J3KT08 172 aa11.6□□□□□ -0.55
VPS29-206ENST00000549578 XP32Q5T750 250 aa11.59□□□□□ -0.55
VPS29-206ENST00000549578 Q6ZVQ6 151 aa11.59□□□□□ -0.55
VPS29-206ENST00000549578 IGHV6-1A0A0B4J1U7 121 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms