RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 M0R2T5 61 aa8.75□□□□□ -1.01
COLCA1-204ENST00000540738 KRTAP26-1Q6PEX3 210 aa8.74□□□□□ -1.01
COLCA1-204ENST00000540738 SPRR1BP22528 89 aa8.72□□□□□ -1.01
COLCA1-204ENST00000540738 TRIOO75962 3097 aa8.71□□□□□ -1.01
COLCA1-204ENST00000540738 MAP1AP78559 2803 aaPredicted RBP8.7□□□□□ -1.02
COLCA1-204ENST00000540738 OXTP01178 125 aa8.7□□□□□ -1.02
COLCA1-204ENST00000540738 COA5Q86WW8 74 aa8.7□□□□□ -1.02
COLCA1-204ENST00000540738 ITPR1Q14643 2758 aa8.7□□□□□ -1.02
COLCA1-204ENST00000540738 HIVEP1P15822 2718 aa8.69□□□□□ -1.02
COLCA1-204ENST00000540738 LINC01600Q96MT4 127 aa8.69□□□□□ -1.02
COLCA1-204ENST00000540738 IGLV8-61A0A075B6I0 122 aa8.68□□□□□ -1.02
COLCA1-204ENST00000540738 KMT2BQ9UMN6 2715 aaPredicted RBP8.68□□□□□ -1.02
COLCA1-204ENST00000540738 CFAP54Q96N23 3096 aa8.66□□□□□ -1.02
COLCA1-204ENST00000540738 PRO0628Q9UI54 55 aa8.64□□□□□ -1.03
COLCA1-204ENST00000540738 FP248Q71RG6 208 aaPredicted RBP8.63□□□□□ -1.03
COLCA1-204ENST00000540738 Q8N1X5 172 aa8.63□□□□□ -1.03
COLCA1-204ENST00000540738 STAB2Q8WWQ8 2551 aa8.62□□□□□ -1.03
COLCA1-204ENST00000540738 UQCR11O14957 56 aa8.61□□□□□ -1.03
COLCA1-204ENST00000540738 ZCCHC13Q8WW36 166 aaKnown RBP8.61□□□□□ -1.03
COLCA1-204ENST00000540738 A8MUN3 132 aa8.59□□□□□ -1.03
COLCA1-204ENST00000540738 KLKP1Q107X0 134 aa8.59□□□□□ -1.03
COLCA1-204ENST00000540738 Q8NDZ9 215 aa8.59□□□□□ -1.03
COLCA1-204ENST00000540738 TNRC18O15417 2968 aaPredicted RBP8.57□□□□□ -1.04
COLCA1-204ENST00000540738 RPS28P62857 69 aaKnown RBP8.57□□□□□ -1.04
COLCA1-204ENST00000540738 LAMA2P24043 3122 aaKnown RBP8.55□□□□□ -1.04
COLCA1-204ENST00000540738 SPANXA2-OT1Q8N9U9 137 aa8.55□□□□□ -1.04
COLCA1-204ENST00000540738 LINC00483Q53H64 154 aa8.55□□□□□ -1.04
COLCA1-204ENST00000540738 TENM4Q6N022 2769 aa8.54□□□□□ -1.04
COLCA1-204ENST00000540738 LINC01554Q52M75 96 aa8.54□□□□□ -1.04
COLCA1-204ENST00000540738 Q6ZRN7 208 aaPredicted RBP8.54□□□□□ -1.04
COLCA1-204ENST00000540738 FRYQ5TBA9 3013 aa8.53□□□□□ -1.04
COLCA1-204ENST00000540738 CYP4F30PQ9H0H9 118 aa8.53□□□□□ -1.04
COLCA1-204ENST00000540738 FRYLO94915 3013 aa8.52□□□□□ -1.04
COLCA1-204ENST00000540738 CSAG1Q6PB30 78 aa8.52□□□□□ -1.05
COLCA1-204ENST00000540738 UNC80Q8N2C7 3258 aa8.52□□□□□ -1.05
COLCA1-204ENST00000540738 NBEAL2Q6ZNJ1 2754 aa8.51□□□□□ -1.05
COLCA1-204ENST00000540738 PANO1I0J062 215 aa8.51□□□□□ -1.05
COLCA1-204ENST00000540738 XIRP2A4UGR9 3374 aa8.51□□□□□ -1.05
COLCA1-204ENST00000540738 VPS13AQ96RL7 3174 aa8.5□□□□□ -1.05
COLCA1-204ENST00000540738 MMP24-AS1A0A0U1RRL7 71 aa8.49□□□□□ -1.05
COLCA1-204ENST00000540738 UTP20O75691 2785 aaKnown RBP8.49□□□□□ -1.05
COLCA1-204ENST00000540738 APCP25054 2843 aa8.48□□□□□ -1.05
COLCA1-204ENST00000540738 ATMQ13315 3056 aa8.48□□□□□ -1.05
COLCA1-204ENST00000540738 C4orf26Q17RF5 130 aa8.48□□□□□ -1.05
COLCA1-204ENST00000540738 COL12A1Q99715 3063 aa8.48□□□□□ -1.05
COLCA1-204ENST00000540738 LINC00472Q9H8W2 130 aa8.47□□□□□ -1.05
COLCA1-204ENST00000540738 MIR22HGQ0VDD5 57 aa8.46□□□□□ -1.06
COLCA1-204ENST00000540738 SPINK7P58062 85 aa8.45□□□□□ -1.06
COLCA1-204ENST00000540738 TACC2O95359 2948 aa8.44□□□□□ -1.06
COLCA1-204ENST00000540738 CDH23Q9H251 3354 aa8.44□□□□□ -1.06
COLCA1-204ENST00000540738 HRES1P13985 223 aa8.43□□□□□ -1.06
COLCA1-204ENST00000540738 S4R3F8 94 aa8.43□□□□□ -1.06
COLCA1-204ENST00000540738 OCR1Q9BZK8 76 aa8.42□□□□□ -1.06
COLCA1-204ENST00000540738 SPINT4Q6UDR6 99 aa8.42□□□□□ -1.06
COLCA1-204ENST00000540738 CRIPTQ9P021 101 aa8.42□□□□□ -1.06
COLCA1-204ENST00000540738 REV3LO60673 3130 aa8.4□□□□□ -1.06
COLCA1-204ENST00000540738 DMXL2Q8TDJ6 3036 aa8.4□□□□□ -1.07
COLCA1-204ENST00000540738 KRTAP4-16G5E9R7 235 aaPredicted RBP8.4□□□□□ -1.07
COLCA1-204ENST00000540738 RPS29P62273 56 aaKnown RBP8.4□□□□□ -1.07
COLCA1-204ENST00000540738 H7BZZ5 65 aa8.39□□□□□ -1.07
COLCA1-204ENST00000540738 DMBT1Q9UGM3 2413 aaPredicted RBP8.38□□□□□ -1.07
COLCA1-204ENST00000540738 CAMK2N1Q7Z7J9 78 aa8.38□□□□□ -1.07
COLCA1-204ENST00000540738 A0A0D9SG42 100 aa8.37□□□□□ -1.07
COLCA1-204ENST00000540738 A0A087X002 238 aa8.37□□□□□ -1.07
COLCA1-204ENST00000540738 Q5W150 140 aa8.36□□□□□ -1.07
COLCA1-204ENST00000540738 SZT2Q5T011 3432 aa8.35□□□□□ -1.07
COLCA1-204ENST00000540738 NIPBLQ6KC79 2804 aaeCLIP8.35□□□□□ -1.07
COLCA1-204ENST00000540738 EYSQ5T1H1 3165 aa8.33□□□□□ -1.08
COLCA1-204ENST00000540738 Q8N9P0 234 aaPredicted RBP8.32□□□□□ -1.08
COLCA1-204ENST00000540738 COL6A3P12111 3177 aa8.3□□□□□ -1.08
COLCA1-204ENST00000540738 NBEAQ8NFP9 2946 aa8.29□□□□□ -1.08
COLCA1-204ENST00000540738 CDC42SE1Q9NRR8 79 aa8.29□□□□□ -1.08
COLCA1-204ENST00000540738 FLG2Q5D862 2391 aaPredicted RBP8.28□□□□□ -1.08
COLCA1-204ENST00000540738 LRBAP50851 2863 aa8.27□□□□□ -1.08
COLCA1-204ENST00000540738 A0A1B0GU33 70 aa8.27□□□□□ -1.09
COLCA1-204ENST00000540738 ASB16-AS1Q495Z4 193 aa8.27□□□□□ -1.09
COLCA1-204ENST00000540738 R4GN34 69 aa8.25□□□□□ -1.09
COLCA1-204ENST00000540738 ZZEF1O43149 2961 aa8.23□□□□□ -1.09
COLCA1-204ENST00000540738 KALRNO60229 2985 aa8.23□□□□□ -1.09
COLCA1-204ENST00000540738 LAMA1P25391 3075 aa8.21□□□□□ -1.09
COLCA1-204ENST00000540738 H3BS24 57 aa8.21□□□□□ -1.1
COLCA1-204ENST00000540738 CRYBG3Q68DQ2 2970 aa8.2□□□□□ -1.1
COLCA1-204ENST00000540738 KRTAP11-1Q8IUC1 163 aa8.2□□□□□ -1.1
COLCA1-204ENST00000540738 Q5XG85 94 aa8.18□□□□□ -1.1
COLCA1-204ENST00000540738 ADGRG4Q8IZF6 3080 aa8.18□□□□□ -1.1
COLCA1-204ENST00000540738 DMAC1Q96GE9 116 aa8.18□□□□□ -1.1
COLCA1-204ENST00000540738 BOD1L1Q8NFC6 3051 aa8.17□□□□□ -1.1
COLCA1-204ENST00000540738 KRTAP13-1Q8IUC0 172 aa8.16□□□□□ -1.1
COLCA1-204ENST00000540738 KRTAP13-2Q52LG2 175 aa8.15□□□□□ -1.11
COLCA1-204ENST00000540738 KRTAP7-1Q8IUC3 87 aa8.14□□□□□ -1.11
COLCA1-204ENST00000540738 Q75L30 129 aa8.13□□□□□ -1.11
COLCA1-204ENST00000540738 DMXL1Q9Y485 3027 aa8.12□□□□□ -1.11
COLCA1-204ENST00000540738 LCA10Q71F78 164 aa8.11□□□□□ -1.11
COLCA1-204ENST00000540738 ZANQ9Y493 2812 aa8.08□□□□□ -1.12
COLCA1-204ENST00000540738 RPL37P61927 97 aaKnown RBP8.08□□□□□ -1.12
COLCA1-204ENST00000540738 CELSR2Q9HCU4 2923 aa8.07□□□□□ -1.12
COLCA1-204ENST00000540738 H1FX-AS1Q4G0G2 97 aa8.07□□□□□ -1.12
COLCA1-204ENST00000540738 CELSR3Q9NYQ7 3312 aa8.06□□□□□ -1.12
COLCA1-204ENST00000540738 M0QZ58 72 aa8.05□□□□□ -1.12
COLCA1-204ENST00000540738 Q1T7F1 81 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms