RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 NCR3O14931 201 aa6.34□□□□□ -1.39
CLSTN3-209ENST00000539982 KCNQ1DNQ9H478 68 aa6.34□□□□□ -1.39
CLSTN3-209ENST00000539982 TRBV10-2A0A0K0K1G8 114 aa6.33□□□□□ -1.4
CLSTN3-209ENST00000539982 M0R2T5 61 aa6.33□□□□□ -1.4
CLSTN3-209ENST00000539982 ETDCA0A1B0GVM5 59 aa6.32□□□□□ -1.4
CLSTN3-209ENST00000539982 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.32□□□□□ -1.4
CLSTN3-209ENST00000539982 H7C2G1 150 aa6.32□□□□□ -1.4
CLSTN3-209ENST00000539982 Q1RN00 199 aa6.32□□□□□ -1.4
CLSTN3-209ENST00000539982 OR13C6PQ8NH95 151 aa6.32□□□□□ -1.4
CLSTN3-209ENST00000539982 H3BUT2 72 aa6.31□□□□□ -1.4
CLSTN3-209ENST00000539982 S100A7L2Q5SY68 101 aa6.31□□□□□ -1.4
CLSTN3-209ENST00000539982 ERC2-IT1O76042 136 aa6.3□□□□□ -1.4
CLSTN3-209ENST00000539982 NAA38Q9BRA0 125 aaKnown RBP6.3□□□□□ -1.4
CLSTN3-209ENST00000539982 PSMB2P49721 201 aa6.29□□□□□ -1.4
CLSTN3-209ENST00000539982 A0A1B0GV90 55 aa6.28□□□□□ -1.4
CLSTN3-209ENST00000539982 A0A1W2PPM0 123 aa6.28□□□□□ -1.4
CLSTN3-209ENST00000539982 B5MCH6 92 aa6.28□□□□□ -1.4
CLSTN3-209ENST00000539982 IGLV6-57P01721 117 aa6.28□□□□□ -1.4
CLSTN3-209ENST00000539982 LYRM7Q5U5X0 104 aa6.28□□□□□ -1.4
CLSTN3-209ENST00000539982 SMIM11BQ8TCY0 68 aa6.28□□□□□ -1.4
CLSTN3-209ENST00000539982 TRBV10-3A0A0K0K1G6 114 aa6.27□□□□□ -1.41
CLSTN3-209ENST00000539982 TRIAP1O43715 76 aa6.27□□□□□ -1.41
CLSTN3-209ENST00000539982 COX6CP09669 75 aa6.27□□□□□ -1.41
CLSTN3-209ENST00000539982 FABP2P12104 132 aa6.27□□□□□ -1.41
CLSTN3-209ENST00000539982 CBY1Q9Y3M2 126 aa6.27□□□□□ -1.41
CLSTN3-209ENST00000539982 SCGB1C2P0DMR2 95 aa6.26□□□□□ -1.41
CLSTN3-209ENST00000539982 VAMP3Q15836 100 aa6.26□□□□□ -1.41
CLSTN3-209ENST00000539982 TRAV23DV6A0A075B6W5 121 aa6.25□□□□□ -1.41
CLSTN3-209ENST00000539982 C9orf92A6NGG3 77 aa6.25□□□□□ -1.41
CLSTN3-209ENST00000539982 C9orf153Q5TBE3 101 aa6.25□□□□□ -1.41
CLSTN3-209ENST00000539982 COX6B2Q6YFQ2 88 aa6.25□□□□□ -1.41
CLSTN3-209ENST00000539982 Q9BRP9 147 aa6.25□□□□□ -1.41
CLSTN3-209ENST00000539982 SPCS1Q9Y6A9 102 aa6.24□□□□□ -1.41
CLSTN3-209ENST00000539982 TRBV20-1A0A075B6N2 111 aa6.23□□□□□ -1.41
CLSTN3-209ENST00000539982 C6orf99Q4VX62 202 aa6.23□□□□□ -1.41
CLSTN3-209ENST00000539982 FLGP20930 4061 aaPredicted RBP6.22□□□□□ -1.41
CLSTN3-209ENST00000539982 H0YGX0 51 aa6.22□□□□□ -1.41
CLSTN3-209ENST00000539982 K7EP34 96 aa6.22□□□□□ -1.41
CLSTN3-209ENST00000539982 Q6ZRX8 168 aa6.22□□□□□ -1.41
CLSTN3-209ENST00000539982 GTF2H5Q6ZYL4 71 aa6.22□□□□□ -1.41
CLSTN3-209ENST00000539982 LIMD2Q9BT23 127 aa6.22□□□□□ -1.41
CLSTN3-209ENST00000539982 ZNF73O43830 326 aaPredicted RBP6.21□□□□□ -1.42
CLSTN3-209ENST00000539982 TCL1BO95988 128 aa6.21□□□□□ -1.42
CLSTN3-209ENST00000539982 TRBV7-6A0A0J9YX20 115 aa6.2□□□□□ -1.42
CLSTN3-209ENST00000539982 ATXN8Q156A1 80 aa6.2□□□□□ -1.42
CLSTN3-209ENST00000539982 CLEC2BQ92478 149 aa6.2□□□□□ -1.42
CLSTN3-209ENST00000539982 COX7BP24311 80 aa6.19□□□□□ -1.42
CLSTN3-209ENST00000539982 H3BMG7 143 aa6.18□□□□□ -1.42
CLSTN3-209ENST00000539982 LST1O00453 97 aa6.18□□□□□ -1.42
CLSTN3-209ENST00000539982 ELOF1P60002 83 aaKnown RBP6.18□□□□□ -1.42
CLSTN3-209ENST00000539982 UBE2V1Q13404 147 aa6.18□□□□□ -1.42
CLSTN3-209ENST00000539982 HRCT1Q6UXD1 115 aa6.18□□□□□ -1.42
CLSTN3-209ENST00000539982 FAM218AQ96MZ4 157 aa6.18□□□□□ -1.42
CLSTN3-209ENST00000539982 SSPOA2VEC9 5147 aa6.18□□□□□ -1.42
CLSTN3-209ENST00000539982 SNCGO76070 127 aa6.17□□□□□ -1.42
CLSTN3-209ENST00000539982 LINC00575Q6W349 94 aa6.17□□□□□ -1.42
CLSTN3-209ENST00000539982 ST20-AS1Q8NBB2 130 aa6.17□□□□□ -1.42
CLSTN3-209ENST00000539982 A0A1B0GX51 115 aa6.16□□□□□ -1.42
CLSTN3-209ENST00000539982 TRACP01848 142 aa6.16□□□□□ -1.42
CLSTN3-209ENST00000539982 RPL37P61927 97 aaKnown RBP6.15□□□□□ -1.42
CLSTN3-209ENST00000539982 hADV29S1A0JD25 119 aa6.14□□□□□ -1.43
CLSTN3-209ENST00000539982 DNAL4O96015 105 aa6.14□□□□□ -1.43
CLSTN3-209ENST00000539982 USH2AO75445 5202 aa6.14□□□□□ -1.43
CLSTN3-209ENST00000539982 C9JAW5 83 aa6.13□□□□□ -1.43
CLSTN3-209ENST00000539982 SPRR1BP22528 89 aa6.13□□□□□ -1.43
CLSTN3-209ENST00000539982 DHRS4-AS1Q9P1J3 65 aa6.13□□□□□ -1.43
CLSTN3-209ENST00000539982 MTURNQ8N3F0 131 aa6.12□□□□□ -1.43
CLSTN3-209ENST00000539982 PRO0461Q9UI25 63 aa6.12□□□□□ -1.43
CLSTN3-209ENST00000539982 F8W1H4 67 aa6.11□□□□□ -1.43
CLSTN3-209ENST00000539982 CD164Q04900 197 aa6.11□□□□□ -1.43
CLSTN3-209ENST00000539982 LAMTOR3Q9UHA4 124 aa6.11□□□□□ -1.43
CLSTN3-209ENST00000539982 Q5XG85 94 aa6.1□□□□□ -1.43
CLSTN3-209ENST00000539982 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.1□□□□□ -1.43
CLSTN3-209ENST00000539982 ORMDL1Q9P0S3 153 aa6.1□□□□□ -1.43
CLSTN3-209ENST00000539982 H3BT86 120 aa6.09□□□□□ -1.43
CLSTN3-209ENST00000539982 BAALC-AS2P0C853 105 aa6.09□□□□□ -1.43
CLSTN3-209ENST00000539982 C1orf195Q5TG92 126 aa6.09□□□□□ -1.43
CLSTN3-209ENST00000539982 Q6ZQY7 126 aa6.09□□□□□ -1.43
CLSTN3-209ENST00000539982 ANKRD29Q8N6D5 301 aa6.09□□□□□ -1.43
CLSTN3-209ENST00000539982 SYNE2Q8WXH0 6885 aaKnown RBP6.09□□□□□ -1.44
CLSTN3-209ENST00000539982 FCGBPQ9Y6R7 5405 aaPredicted RBP6.08□□□□□ -1.44
CLSTN3-209ENST00000539982 H3BQ85 93 aa6.08□□□□□ -1.44
CLSTN3-209ENST00000539982 GHRHP01286 108 aa6.08□□□□□ -1.44
CLSTN3-209ENST00000539982 SMCPP49901 116 aaPredicted RBP6.08□□□□□ -1.44
CLSTN3-209ENST00000539982 OCIAD2Q56VL3 154 aa6.08□□□□□ -1.44
CLSTN3-209ENST00000539982 Q6Q795 121 aa6.08□□□□□ -1.44
CLSTN3-209ENST00000539982 KRTAP9-8Q9BYQ0 159 aa6.08□□□□□ -1.44
CLSTN3-209ENST00000539982 MACF1Q9UPN3 7388 aaKnown RBP6.07□□□□□ -1.44
CLSTN3-209ENST00000539982 TMEM256-PLSCR3K7ERE1 68 aa6.06□□□□□ -1.44
CLSTN3-209ENST00000539982 SMIM29Q86T20 159 aa6.04□□□□□ -1.44
CLSTN3-209ENST00000539982 DEFB105AQ8NG35 78 aa6.04□□□□□ -1.44
CLSTN3-209ENST00000539982 PPDPFLQ8WWR9 84 aa6.04□□□□□ -1.44
CLSTN3-209ENST00000539982 IGLV5-48A0A075B6I7 105 aa6.03□□□□□ -1.44
CLSTN3-209ENST00000539982 TEN1Q86WV5 123 aa6.03□□□□□ -1.44
CLSTN3-209ENST00000539982 ETDBQ3ZM63 59 aa6.02□□□□□ -1.45
CLSTN3-209ENST00000539982 KRTAP19-1Q8IUB9 90 aa6.02□□□□□ -1.45
CLSTN3-209ENST00000539982 TEX49A0A1B0GTD5 131 aa6.01□□□□□ -1.45
CLSTN3-209ENST00000539982 ATP11AUNQ6ZP68 121 aa6□□□□□ -1.45
CLSTN3-209ENST00000539982 JMJD7-PLA2G4BH0Y9G9 81 aa5.99□□□□□ -1.45
CLSTN3-209ENST00000539982 NDUFV3P56181 108 aaKnown RBP5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms