RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 ABCA12Q86UK0 2595 aa5.72□□□□□ -1.49
SNHG1-209ENST00000538654 IGLV8-61A0A075B6I0 122 aa5.72□□□□□ -1.49
SNHG1-209ENST00000538654 PRB2P02812 416 aaPredicted RBP5.72□□□□□ -1.49
SNHG1-209ENST00000538654 CASC2Q6XLA1 102 aa5.72□□□□□ -1.49
SNHG1-209ENST00000538654 CUBNO60494 3623 aa5.72□□□□□ -1.49
SNHG1-209ENST00000538654 C16orf90A8MZG2 172 aa5.72□□□□□ -1.49
SNHG1-209ENST00000538654 IGSF10Q6WRI0 2623 aa5.72□□□□□ -1.49
SNHG1-209ENST00000538654 KRTAP16-1A8MUX0 517 aa5.71□□□□□ -1.5
SNHG1-209ENST00000538654 LOC101927531A0A1B0GV80 90 aa5.71□□□□□ -1.5
SNHG1-209ENST00000538654 FAM168BA1KXE4 195 aa5.71□□□□□ -1.5
SNHG1-209ENST00000538654 A0A087WSZ3 146 aa5.7□□□□□ -1.5
SNHG1-209ENST00000538654 DEFB116Q30KQ4 102 aa5.7□□□□□ -1.5
SNHG1-209ENST00000538654 C9orf163Q8N9P6 203 aa5.7□□□□□ -1.5
SNHG1-209ENST00000538654 HIVEP2P31629 2446 aa5.69□□□□□ -1.5
SNHG1-209ENST00000538654 A6NED7 52 aa5.69□□□□□ -1.5
SNHG1-209ENST00000538654 PHF5AQ7RTV0 110 aaKnown RBP5.68□□□□□ -1.5
SNHG1-209ENST00000538654 SPTSSBQ8NFR3 76 aa5.68□□□□□ -1.5
SNHG1-209ENST00000538654 FLNAP21333 2647 aaKnown RBP5.68□□□□□ -1.5
SNHG1-209ENST00000538654 A8MU10 97 aa5.68□□□□□ -1.5
SNHG1-209ENST00000538654 A8MWP4 228 aa5.67□□□□□ -1.5
SNHG1-209ENST00000538654 DNAH10OSP0CZ25 163 aa5.67□□□□□ -1.5
SNHG1-209ENST00000538654 C7orf65Q6ZTY9 151 aa5.67□□□□□ -1.5
SNHG1-209ENST00000538654 IGLV7-46A0A075B6I9 117 aa5.67□□□□□ -1.5
SNHG1-209ENST00000538654 COA5Q86WW8 74 aa5.67□□□□□ -1.5
SNHG1-209ENST00000538654 KRTAP7-1Q8IUC3 87 aa5.67□□□□□ -1.5
SNHG1-209ENST00000538654 CACNA1AO00555 2505 aa5.67□□□□□ -1.5
SNHG1-209ENST00000538654 CDC42SE1Q9NRR8 79 aa5.67□□□□□ -1.5
SNHG1-209ENST00000538654 CCDC168Q8NDH2 2452 aa5.66□□□□□ -1.5
SNHG1-209ENST00000538654 RPL37AP61513 92 aaKnown RBP5.66□□□□□ -1.5
SNHG1-209ENST00000538654 CNBPP62633 177 aaKnown RBP5.66□□□□□ -1.5
SNHG1-209ENST00000538654 UBR5O95071 2799 aaPredicted RBP5.65□□□□□ -1.5
SNHG1-209ENST00000538654 A6NN06 94 aa5.65□□□□□ -1.51
SNHG1-209ENST00000538654 A0A0G2JQZ4 141 aa5.64□□□□□ -1.51
SNHG1-209ENST00000538654 A0A1W2PNN7 141 aa5.64□□□□□ -1.51
SNHG1-209ENST00000538654 ZNF462Q96JM2 2506 aa5.63□□□□□ -1.51
SNHG1-209ENST00000538654 DEFB131BA0A096LNP1 70 aa5.63□□□□□ -1.51
SNHG1-209ENST00000538654 LINC00472Q9H8W2 130 aa5.63□□□□□ -1.51
SNHG1-209ENST00000538654 LINC01558Q9Y6Z2 57 aa5.63□□□□□ -1.51
SNHG1-209ENST00000538654 TP53AIP1Q9HCN2 124 aa5.62□□□□□ -1.51
SNHG1-209ENST00000538654 ZNF469Q96JG9 3925 aaPredicted RBP5.62□□□□□ -1.51
SNHG1-209ENST00000538654 KRTAP23-1A1A580 65 aa5.61□□□□□ -1.51
SNHG1-209ENST00000538654 MTORP42345 2549 aa5.61□□□□□ -1.51
SNHG1-209ENST00000538654 ANK3Q12955 4377 aaKnown RBP5.61□□□□□ -1.51
SNHG1-209ENST00000538654 SPRR1BP22528 89 aa5.61□□□□□ -1.51
SNHG1-209ENST00000538654 PRLHP81277 87 aa5.61□□□□□ -1.51
SNHG1-209ENST00000538654 PIEZO1Q92508 2521 aa5.61□□□□□ -1.51
SNHG1-209ENST00000538654 C8orf17Q9NRJ1 99 aa5.6□□□□□ -1.51
SNHG1-209ENST00000538654 PLAC8Q9NZF1 115 aa5.6□□□□□ -1.51
SNHG1-209ENST00000538654 MMP24-AS1A0A0U1RRL7 71 aa5.59□□□□□ -1.51
SNHG1-209ENST00000538654 LUZP6Q538Z0 58 aa5.59□□□□□ -1.52
SNHG1-209ENST00000538654 CASC10Q5T4H9 136 aa5.58□□□□□ -1.52
SNHG1-209ENST00000538654 MOBPQ13875 183 aa5.57□□□□□ -1.52
SNHG1-209ENST00000538654 UNC79Q9P2D8 2635 aa5.57□□□□□ -1.52
SNHG1-209ENST00000538654 SPAG11AQ6PDA7 123 aa5.57□□□□□ -1.52
SNHG1-209ENST00000538654 RETNLBQ9BQ08 111 aa5.57□□□□□ -1.52
SNHG1-209ENST00000538654 ACANP16112 2415 aa5.57□□□□□ -1.52
SNHG1-209ENST00000538654 HIVEP1P15822 2718 aa5.57□□□□□ -1.52
SNHG1-209ENST00000538654 NOTCH2NLQ7Z3S9 236 aa5.56□□□□□ -1.52
SNHG1-209ENST00000538654 PCOTHQ58A44 107 aa5.56□□□□□ -1.52
SNHG1-209ENST00000538654 Q6ZR54 194 aa5.56□□□□□ -1.52
SNHG1-209ENST00000538654 VWFP04275 2813 aa5.55□□□□□ -1.52
SNHG1-209ENST00000538654 ASB16-AS1Q495Z4 193 aa5.55□□□□□ -1.52
SNHG1-209ENST00000538654 LCE2AQ5TA79 106 aaPredicted RBP5.55□□□□□ -1.52
SNHG1-209ENST00000538654 A0A096LNI7 61 aa5.54□□□□□ -1.52
SNHG1-209ENST00000538654 SMR3AQ99954 134 aa5.53□□□□□ -1.52
SNHG1-209ENST00000538654 IGKV2-24A0A0C4DH68 120 aa5.52□□□□□ -1.53
SNHG1-209ENST00000538654 HRES1P13985 223 aa5.51□□□□□ -1.53
SNHG1-209ENST00000538654 PDZD2O15018 2839 aa5.51□□□□□ -1.53
SNHG1-209ENST00000538654 SPINK7P58062 85 aa5.5□□□□□ -1.53
SNHG1-209ENST00000538654 NOTCH2Q04721 2471 aa5.49□□□□□ -1.53
SNHG1-209ENST00000538654 KRTAP10-11P60412 298 aa5.49□□□□□ -1.53
SNHG1-209ENST00000538654 Q96NJ1 140 aa5.48□□□□□ -1.53
SNHG1-209ENST00000538654 USP24Q9UPU5 2620 aa5.48□□□□□ -1.53
SNHG1-209ENST00000538654 F8P00451 2351 aa5.47□□□□□ -1.53
SNHG1-209ENST00000538654 A0A1B0GVX0 72 aa5.47□□□□□ -1.53
SNHG1-209ENST00000538654 C14orf177Q52M58 125 aa5.47□□□□□ -1.53
SNHG1-209ENST00000538654 MRPL34Q9BQ48 92 aaKnown RBP5.47□□□□□ -1.53
SNHG1-209ENST00000538654 C1orf134Q5TEV5 83 aa5.46□□□□□ -1.54
SNHG1-209ENST00000538654 PKD1L1Q8TDX9 2849 aa5.45□□□□□ -1.54
SNHG1-209ENST00000538654 KRTAP11-1Q8IUC1 163 aa5.44□□□□□ -1.54
SNHG1-209ENST00000538654 ACYP2P14621 99 aa5.44□□□□□ -1.54
SNHG1-209ENST00000538654 CIRBP-AS1Q8TBR5 109 aa5.44□□□□□ -1.54
SNHG1-209ENST00000538654 A0A087X002 238 aa5.43□□□□□ -1.54
SNHG1-209ENST00000538654 TENM1Q9UKZ4 2725 aa5.42□□□□□ -1.54
SNHG1-209ENST00000538654 KRTAP13-1Q8IUC0 172 aa5.42□□□□□ -1.54
SNHG1-209ENST00000538654 TENM2Q9NT68 2774 aa5.41□□□□□ -1.54
SNHG1-209ENST00000538654 TEP1Q99973 2627 aaKnown RBP5.41□□□□□ -1.54
SNHG1-209ENST00000538654 LINC00483Q53H64 154 aa5.4□□□□□ -1.55
SNHG1-209ENST00000538654 ITPR2Q14571 2701 aa5.39□□□□□ -1.55
SNHG1-209ENST00000538654 ATRQ13535 2644 aa5.39□□□□□ -1.55
SNHG1-209ENST00000538654 TENM3Q9P273 2699 aa5.38□□□□□ -1.55
SNHG1-209ENST00000538654 BAHCC1Q9P281 2608 aa5.38□□□□□ -1.55
SNHG1-209ENST00000538654 KMT2BQ9UMN6 2715 aaPredicted RBP5.38□□□□□ -1.55
SNHG1-209ENST00000538654 DNAH1Q9P2D7 4330 aa5.38□□□□□ -1.55
SNHG1-209ENST00000538654 OTOGQ6ZRI0 2925 aa5.38□□□□□ -1.55
SNHG1-209ENST00000538654 A0A1B0GU69 56 aa5.36□□□□□ -1.55
SNHG1-209ENST00000538654 KRTAP1-5Q9BYS1 174 aa5.36□□□□□ -1.55
SNHG1-209ENST00000538654 SPATA8Q6RVD6 105 aa5.36□□□□□ -1.55
SNHG1-209ENST00000538654 DMAC1Q96GE9 116 aa5.36□□□□□ -1.55
SNHG1-209ENST00000538654 J3QKU1 62 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 266.6 ms