RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 RANBP2P49792 3224 aaKnown RBP1.36□□□□□ -2.19
SKA3-207ENST00000536239 SPRR1BP22528 89 aa1.36□□□□□ -2.19
SKA3-207ENST00000536239 CACNA1BQ00975 2339 aa1.36□□□□□ -2.19
SKA3-207ENST00000536239 LELP1Q5T871 98 aa1.36□□□□□ -2.19
SKA3-207ENST00000536239 CFAP47Q6ZTR5 3102 aa1.36□□□□□ -2.19
SKA3-207ENST00000536239 CNOT1A5YKK6 2376 aaKnown RBP1.36□□□□□ -2.19
SKA3-207ENST00000536239 VPS13AQ96RL7 3174 aa1.36□□□□□ -2.19
SKA3-207ENST00000536239 UTRNP46939 3433 aa1.36□□□□□ -2.19
SKA3-207ENST00000536239 KALRNO60229 2985 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 CUL9Q8IWT3 2517 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 FRYQ5TBA9 3013 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 PRUNE2Q8WUY3 3088 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 MKI67P46013 3256 aaKnown RBP1.35□□□□□ -2.19
SKA3-207ENST00000536239 UNC80Q8N2C7 3258 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 ANKRD17O75179 2603 aaKnown RBP1.35□□□□□ -2.19
SKA3-207ENST00000536239 A0A1W2PNN7 141 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 H0YAA0 97 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 LY6EQ16553 131 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 DEFB136Q30KP8 78 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 PCNX1Q96RV3 2341 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 GPR179Q6PRD1 2367 aa1.35□□□□□ -2.19
SKA3-207ENST00000536239 FRYLO94915 3013 aa1.34□□□□□ -2.19
SKA3-207ENST00000536239 FBN1P35555 2871 aaKnown RBP1.34□□□□□ -2.19
SKA3-207ENST00000536239 A0A0G2JQZ4 141 aa1.34□□□□□ -2.19
SKA3-207ENST00000536239 A0A1B0GU33 70 aa1.34□□□□□ -2.19
SKA3-207ENST00000536239 COX6B2Q6YFQ2 88 aa1.34□□□□□ -2.19
SKA3-207ENST00000536239 Q6ZSA8 131 aa1.34□□□□□ -2.19
SKA3-207ENST00000536239 PSORS1C2Q9UIG4 136 aa1.34□□□□□ -2.19
SKA3-207ENST00000536239 ACACAQ13085 2346 aa1.33□□□□□ -2.2
SKA3-207ENST00000536239 DEFB130BP0DP73 79 aa1.33□□□□□ -2.2
SKA3-207ENST00000536239 DEFB130AP0DP74 79 aa1.33□□□□□ -2.2
SKA3-207ENST00000536239 H1FX-AS1Q4G0G2 97 aa1.33□□□□□ -2.2
SKA3-207ENST00000536239 CRIPTQ9P021 101 aa1.33□□□□□ -2.2
SKA3-207ENST00000536239 TENM2Q9NT68 2774 aa1.33□□□□□ -2.2
SKA3-207ENST00000536239 WDFY4Q6ZS81 3184 aa1.32□□□□□ -2.2
SKA3-207ENST00000536239 A0A096LPF7 62 aa1.32□□□□□ -2.2
SKA3-207ENST00000536239 TPRXLQ17RH7 258 aa1.32□□□□□ -2.2
SKA3-207ENST00000536239 TRIOO75962 3097 aa1.32□□□□□ -2.2
SKA3-207ENST00000536239 SZT2Q5T011 3432 aa1.32□□□□□ -2.2
SKA3-207ENST00000536239 ALMS1Q8TCU4 4167 aa1.32□□□□□ -2.2
SKA3-207ENST00000536239 MAP1BP46821 2468 aaKnown RBP1.31□□□□□ -2.2
SKA3-207ENST00000536239 ROS1P08922 2347 aa1.31□□□□□ -2.2
SKA3-207ENST00000536239 PTPRZ1P23471 2315 aaPredicted RBP1.31□□□□□ -2.2
SKA3-207ENST00000536239 AKAP6Q13023 2319 aa1.31□□□□□ -2.2
SKA3-207ENST00000536239 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.31□□□□□ -2.2
SKA3-207ENST00000536239 K7EIL1 84 aa1.31□□□□□ -2.2
SKA3-207ENST00000536239 C10orf99Q6UWK7 81 aa1.31□□□□□ -2.2
SKA3-207ENST00000536239 CHD6Q8TD26 2715 aa1.31□□□□□ -2.2
SKA3-207ENST00000536239 TPRP12270 2363 aaKnown RBP1.3□□□□□ -2.2
SKA3-207ENST00000536239 ZDBF2Q9HCK1 2354 aa1.3□□□□□ -2.2
SKA3-207ENST00000536239 AKAP13Q12802 2813 aa1.3□□□□□ -2.2
SKA3-207ENST00000536239 EP300Q09472 2414 aaPredicted RBP1.3□□□□□ -2.2
SKA3-207ENST00000536239 IGF2RP11717 2491 aa1.3□□□□□ -2.2
SKA3-207ENST00000536239 RP1L1Q8IWN7 2480 aaPredicted RBP1.3□□□□□ -2.2
SKA3-207ENST00000536239 H3BNG1 76 aa1.3□□□□□ -2.2
SKA3-207ENST00000536239 RPL37P61927 97 aaKnown RBP1.3□□□□□ -2.2
SKA3-207ENST00000536239 OTOGQ6ZRI0 2925 aa1.3□□□□□ -2.2
SKA3-207ENST00000536239 SPTA1P02549 2419 aa1.3□□□□□ -2.2
SKA3-207ENST00000536239 LAMA2P24043 3122 aaKnown RBP1.3□□□□□ -2.2
SKA3-207ENST00000536239 FCGBPQ9Y6R7 5405 aaPredicted RBP1.29□□□□□ -2.2
SKA3-207ENST00000536239 PLAC4Q8WY50 150 aa1.29□□□□□ -2.2
SKA3-207ENST00000536239 PRO2289Q9P1D8 64 aa1.29□□□□□ -2.2
SKA3-207ENST00000536239 CELSR2Q9HCU4 2923 aa1.29□□□□□ -2.2
SKA3-207ENST00000536239 ASH1LQ9NR48 2969 aaKnown RBP1.29□□□□□ -2.2
SKA3-207ENST00000536239 SPTBN4Q9H254 2564 aa1.28□□□□□ -2.2
SKA3-207ENST00000536239 DSPP15924 2871 aaKnown RBP1.28□□□□□ -2.2
SKA3-207ENST00000536239 SPART-AS1P0CW21 52 aa1.28□□□□□ -2.2
SKA3-207ENST00000536239 PRLHP81277 87 aa1.28□□□□□ -2.2
SKA3-207ENST00000536239 LINC01556Q5JQF7 62 aa1.28□□□□□ -2.2
SKA3-207ENST00000536239 NCOR1O75376 2440 aa1.28□□□□□ -2.2
SKA3-207ENST00000536239 PIEZO2Q9H5I5 2752 aa1.28□□□□□ -2.2
SKA3-207ENST00000536239 TRANK1O15050 2925 aa1.28□□□□□ -2.2
SKA3-207ENST00000536239 LAMA1P25391 3075 aa1.28□□□□□ -2.2
SKA3-207ENST00000536239 BOD1L1Q8NFC6 3051 aa1.28□□□□□ -2.2
SKA3-207ENST00000536239 C5orf42Q9H799 3197 aa1.28□□□□□ -2.21
SKA3-207ENST00000536239 DCHS1Q96JQ0 3298 aa1.28□□□□□ -2.21
SKA3-207ENST00000536239 XIRP2A4UGR9 3374 aa1.28□□□□□ -2.21
SKA3-207ENST00000536239 REV3LO60673 3130 aa1.27□□□□□ -2.21
SKA3-207ENST00000536239 DMXL2Q8TDJ6 3036 aa1.27□□□□□ -2.21
SKA3-207ENST00000536239 MAP1AP78559 2803 aaPredicted RBP1.27□□□□□ -2.21
SKA3-207ENST00000536239 SPINK1P00995 79 aa1.27□□□□□ -2.21
SKA3-207ENST00000536239 KRTAP12-4P60329 112 aa1.27□□□□□ -2.21
SKA3-207ENST00000536239 TACC2O95359 2948 aa1.27□□□□□ -2.21
SKA3-207ENST00000536239 ITPR1Q14643 2758 aa1.26□□□□□ -2.21
SKA3-207ENST00000536239 C2CD3Q4AC94 2353 aa1.26□□□□□ -2.21
SKA3-207ENST00000536239 EP400Q96L91 3159 aa1.26□□□□□ -2.21
SKA3-207ENST00000536239 A0A096LNI7 61 aa1.26□□□□□ -2.21
SKA3-207ENST00000536239 FLG2Q5D862 2391 aaPredicted RBP1.26□□□□□ -2.21
SKA3-207ENST00000536239 FREM2Q5SZK8 3169 aa1.25□□□□□ -2.21
SKA3-207ENST00000536239 NCOR2Q9Y618 2525 aa1.25□□□□□ -2.21
SKA3-207ENST00000536239 CHD9Q3L8U1 2897 aa1.25□□□□□ -2.21
SKA3-207ENST00000536239 KRTAP13-1Q8IUC0 172 aa1.25□□□□□ -2.21
SKA3-207ENST00000536239 C10orf95Q9H7T3 257 aa1.25□□□□□ -2.21
SKA3-207ENST00000536239 ZFHX2Q9C0A1 2572 aaPredicted RBP1.25□□□□□ -2.21
SKA3-207ENST00000536239 LRBAP50851 2863 aa1.25□□□□□ -2.21
SKA3-207ENST00000536239 SPG11Q96JI7 2443 aa1.25□□□□□ -2.21
SKA3-207ENST00000536239 USP34Q70CQ2 3546 aa1.24□□□□□ -2.21
SKA3-207ENST00000536239 ABCA2Q9BZC7 2435 aa1.24□□□□□ -2.21
SKA3-207ENST00000536239 DNAH14Q0VDD8 3507 aa1.24□□□□□ -2.21
SKA3-207ENST00000536239 CACNA1HO95180 2353 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms