RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 FAM218AQ96MZ4 157 aa12.88□□□□□ -0.35
SFSWAP-204ENST00000535399 IGLV7-46A0A075B6I9 117 aa12.87□□□□□ -0.35
SFSWAP-204ENST00000535399 LOC105371267A0A1B0GV96 52 aa12.87□□□□□ -0.35
SFSWAP-204ENST00000535399 TRIAP1O43715 76 aa12.86□□□□□ -0.35
SFSWAP-204ENST00000535399 HRCT1Q6UXD1 115 aa12.85□□□□□ -0.35
SFSWAP-204ENST00000535399 FP248Q71RG6 208 aaPredicted RBP12.85□□□□□ -0.35
SFSWAP-204ENST00000535399 A0A0G2JQZ4 141 aa12.82□□□□□ -0.36
SFSWAP-204ENST00000535399 CD164Q04900 197 aa12.82□□□□□ -0.36
SFSWAP-204ENST00000535399 PPDPFLQ8WWR9 84 aa12.82□□□□□ -0.36
SFSWAP-204ENST00000535399 F8WEM9 126 aa12.8□□□□□ -0.36
SFSWAP-204ENST00000535399 SNCGO76070 127 aa12.8□□□□□ -0.36
SFSWAP-204ENST00000535399 TPRXLQ17RH7 258 aa12.8□□□□□ -0.36
SFSWAP-204ENST00000535399 A0A1B0GX51 115 aa12.79□□□□□ -0.36
SFSWAP-204ENST00000535399 IGLV8-61A0A075B6I0 122 aa12.78□□□□□ -0.36
SFSWAP-204ENST00000535399 PSMB2P49721 201 aa12.77□□□□□ -0.37
SFSWAP-204ENST00000535399 OCIAD2Q56VL3 154 aa12.77□□□□□ -0.37
SFSWAP-204ENST00000535399 LIMD2Q9BT23 127 aa12.77□□□□□ -0.37
SFSWAP-204ENST00000535399 CLEC2BQ92478 149 aa12.76□□□□□ -0.37
SFSWAP-204ENST00000535399 SNHG12Q9BXW3 62 aa12.76□□□□□ -0.37
SFSWAP-204ENST00000535399 RNF213Q63HN8 5207 aa12.74□□□□□ -0.37
SFSWAP-204ENST00000535399 Q6JHZ5 121 aa12.73□□□□□ -0.37
SFSWAP-204ENST00000535399 COX6CP09669 75 aa12.72□□□□□ -0.37
SFSWAP-204ENST00000535399 Q5XG85 94 aa12.72□□□□□ -0.37
SFSWAP-204ENST00000535399 M0R143 59 aa12.71□□□□□ -0.37
SFSWAP-204ENST00000535399 KRTAP13-3Q3SY46 172 aa12.71□□□□□ -0.37
SFSWAP-204ENST00000535399 IGFL1Q6UW32 110 aa12.71□□□□□ -0.37
SFSWAP-204ENST00000535399 TSTD3H0UI37 97 aa12.69□□□□□ -0.38
SFSWAP-204ENST00000535399 CDIP1Q9H305 208 aa12.69□□□□□ -0.38
SFSWAP-204ENST00000535399 H3BUT2 72 aa12.68□□□□□ -0.38
SFSWAP-204ENST00000535399 GHRHP01286 108 aa12.66□□□□□ -0.38
SFSWAP-204ENST00000535399 NDUFV3P56181 108 aaKnown RBP12.66□□□□□ -0.38
SFSWAP-204ENST00000535399 DNAL4O96015 105 aa12.64□□□□□ -0.39
SFSWAP-204ENST00000535399 FABP2P12104 132 aa12.64□□□□□ -0.39
SFSWAP-204ENST00000535399 SCGB1C2P0DMR2 95 aa12.62□□□□□ -0.39
SFSWAP-204ENST00000535399 ORMDL1Q9P0S3 153 aa12.62□□□□□ -0.39
SFSWAP-204ENST00000535399 TRBV7-7A0A0K0K1E9 115 aa12.61□□□□□ -0.39
SFSWAP-204ENST00000535399 C1orf195Q5TG92 126 aa12.61□□□□□ -0.39
SFSWAP-204ENST00000535399 MUC17Q685J3 4493 aa12.6□□□□□ -0.39
SFSWAP-204ENST00000535399 LST1O00453 97 aa12.59□□□□□ -0.39
SFSWAP-204ENST00000535399 TRACP01848 142 aa12.59□□□□□ -0.39
SFSWAP-204ENST00000535399 H3BMG7 143 aa12.58□□□□□ -0.4
SFSWAP-204ENST00000535399 H3BQ85 93 aa12.58□□□□□ -0.4
SFSWAP-204ENST00000535399 TCL1BO95988 128 aa12.58□□□□□ -0.4
SFSWAP-204ENST00000535399 NAA38Q9BRA0 125 aaKnown RBP12.56□□□□□ -0.4
SFSWAP-204ENST00000535399 TMEM256-PLSCR3K7ERE1 68 aa12.54□□□□□ -0.4
SFSWAP-204ENST00000535399 ASB16-AS1Q495Z4 193 aa12.54□□□□□ -0.4
SFSWAP-204ENST00000535399 Q6Q795 121 aa12.53□□□□□ -0.4
SFSWAP-204ENST00000535399 BATFQ16520 125 aa12.52□□□□□ -0.41
SFSWAP-204ENST00000535399 UBE2V1Q13404 147 aa12.5□□□□□ -0.41
SFSWAP-204ENST00000535399 TEN1Q86WV5 123 aa12.5□□□□□ -0.41
SFSWAP-204ENST00000535399 MUC2Q02817 5179 aa12.49□□□□□ -0.41
SFSWAP-204ENST00000535399 XP32Q5T750 250 aa12.47□□□□□ -0.41
SFSWAP-204ENST00000535399 A0A1B0GV72 72 aa12.46□□□□□ -0.41
SFSWAP-204ENST00000535399 A0A1W2PNM2 257 aa12.46□□□□□ -0.41
SFSWAP-204ENST00000535399 ATXN8Q156A1 80 aa12.45□□□□□ -0.42
SFSWAP-204ENST00000535399 C9orf92A6NGG3 77 aa12.44□□□□□ -0.42
SFSWAP-204ENST00000535399 BAALC-AS2P0C853 105 aa12.44□□□□□ -0.42
SFSWAP-204ENST00000535399 ANKRD29Q8N6D5 301 aa12.44□□□□□ -0.42
SFSWAP-204ENST00000535399 A0A087WSZ3 146 aa12.42□□□□□ -0.42
SFSWAP-204ENST00000535399 SS18L2Q9UHA2 77 aa12.41□□□□□ -0.42
SFSWAP-204ENST00000535399 TAX1BP3O14907 124 aa12.39□□□□□ -0.43
SFSWAP-204ENST00000535399 LYRM7Q5U5X0 104 aa12.39□□□□□ -0.43
SFSWAP-204ENST00000535399 TRBV7-4A0A0J9YYF1 115 aa12.37□□□□□ -0.43
SFSWAP-204ENST00000535399 C9orf118A6NHY6 69 aa12.37□□□□□ -0.43
SFSWAP-204ENST00000535399 SEC61BP60468 96 aaKnown RBP12.37□□□□□ -0.43
SFSWAP-204ENST00000535399 TRBV20-1A0A075B6N2 111 aa12.35□□□□□ -0.43
SFSWAP-204ENST00000535399 RBM3P98179 157 aaKnown RBP12.35□□□□□ -0.43
SFSWAP-204ENST00000535399 CCKP06307 115 aa12.33□□□□□ -0.44
SFSWAP-204ENST00000535399 Q96NJ1 140 aa12.32□□□□□ -0.44
SFSWAP-204ENST00000535399 A0A1W2PPM0 123 aa12.3□□□□□ -0.44
SFSWAP-204ENST00000535399 DSCR8Q96T75 97 aa12.3□□□□□ -0.44
SFSWAP-204ENST00000535399 C9JAW5 83 aa12.28□□□□□ -0.44
SFSWAP-204ENST00000535399 KRTAP4-1Q9BYQ7 146 aa12.28□□□□□ -0.44
SFSWAP-204ENST00000535399 VPS25Q9BRG1 176 aa12.24□□□□□ -0.45
SFSWAP-204ENST00000535399 JMJD7-PLA2G4BH0Y9G9 81 aa12.23□□□□□ -0.45
SFSWAP-204ENST00000535399 RPL37P61927 97 aaKnown RBP12.22□□□□□ -0.45
SFSWAP-204ENST00000535399 PCOTHQ58A44 107 aa12.22□□□□□ -0.45
SFSWAP-204ENST00000535399 OBSCN-AS1Q96MR7 158 aa12.22□□□□□ -0.45
SFSWAP-204ENST00000535399 A0A0U1RQV1 116 aa12.2□□□□□ -0.46
SFSWAP-204ENST00000535399 COL5A1-AS1Q5SY13 56 aa12.2□□□□□ -0.46
SFSWAP-204ENST00000535399 LINC00472Q9H8W2 130 aa12.2□□□□□ -0.46
SFSWAP-204ENST00000535399 FAT4Q6V0I7 4981 aa12.2□□□□□ -0.46
SFSWAP-204ENST00000535399 LOC110117498A0A087WWA1 95 aa12.19□□□□□ -0.46
SFSWAP-204ENST00000535399 Q6ZQT0 140 aa12.19□□□□□ -0.46
SFSWAP-204ENST00000535399 SIGMAR1Q99720 223 aa12.17□□□□□ -0.46
SFSWAP-204ENST00000535399 H3BT86 120 aa12.16□□□□□ -0.46
SFSWAP-204ENST00000535399 IGKV4-1P06312 121 aa12.16□□□□□ -0.46
SFSWAP-204ENST00000535399 MTURNQ8N3F0 131 aa12.15□□□□□ -0.46
SFSWAP-204ENST00000535399 C14orf132Q9NPU4 83 aa12.15□□□□□ -0.46
SFSWAP-204ENST00000535399 SPCS1Q9Y6A9 102 aa12.15□□□□□ -0.46
SFSWAP-204ENST00000535399 DEFB116Q30KQ4 102 aa12.14□□□□□ -0.47
SFSWAP-204ENST00000535399 PDE6GP18545 87 aa12.13□□□□□ -0.47
SFSWAP-204ENST00000535399 C21orf62-AS1Q17RA5 79 aa12.13□□□□□ -0.47
SFSWAP-204ENST00000535399 PCP4L1A6NKN8 68 aa12.12□□□□□ -0.47
SFSWAP-204ENST00000535399 Q75L30 129 aa12.11□□□□□ -0.47
SFSWAP-204ENST00000535399 DSCR10P59022 87 aa12.09□□□□□ -0.47
SFSWAP-204ENST00000535399 A0A1B0GW54 56 aa12.08□□□□□ -0.48
SFSWAP-204ENST00000535399 C20orf166-AS1Q96NR2 134 aa12.06□□□□□ -0.48
SFSWAP-204ENST00000535399 LINC00313P59037 77 aa12.03□□□□□ -0.48
SFSWAP-204ENST00000535399 NOTCH2NLQ7Z3S9 236 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms