RNA–Protein interactions for RNA: ENST00000534532.6

NCAPD3-213, Transcript of non-SMC condensin II complex subunit D3, human

TSL 2

Gene NCAPD3, Length 5,539 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCAPD3-213	ENST00000534532	KRTAP10-2	P60368	255 aa		9.6	□□□□□ -0.87
NCAPD3-213	ENST00000534532	C5orf42	Q9H799	3197 aa		9.6	□□□□□ -0.87
NCAPD3-213	ENST00000534532	NOTCH1	P46531	2555 aa		9.59	□□□□□ -0.87
NCAPD3-213	ENST00000534532	NBEAL1	Q6ZS30	2694 aa		9.59	□□□□□ -0.87
NCAPD3-213	ENST00000534532	HRES1	P13985	223 aa		9.56	□□□□□ -0.88
NCAPD3-213	ENST00000534532	OCR1	Q9BZK8	76 aa		9.54	□□□□□ -0.88
NCAPD3-213	ENST00000534532	IGSF10	Q6WRI0	2623 aa		9.53	□□□□□ -0.88
NCAPD3-213	ENST00000534532	MGA	Q8IWI9	3026 aa		9.53	□□□□□ -0.88
NCAPD3-213	ENST00000534532	MMP24-AS1	A0A0U1RRL7	71 aa		9.53	□□□□□ -0.88
NCAPD3-213	ENST00000534532	KRTAP26-1	Q6PEX3	210 aa		9.52	□□□□□ -0.88
NCAPD3-213	ENST00000534532		Q8NDZ9	215 aa		9.52	□□□□□ -0.89
NCAPD3-213	ENST00000534532		Q6ZR54	194 aa		9.51	□□□□□ -0.89
NCAPD3-213	ENST00000534532		S4R3F8	94 aa		9.51	□□□□□ -0.89
NCAPD3-213	ENST00000534532	OXT	P01178	125 aa		9.5	□□□□□ -0.89
NCAPD3-213	ENST00000534532	RANBP2	P49792	3224 aa	Known RBP	9.49	□□□□□ -0.89
NCAPD3-213	ENST00000534532	SPINK7	P58062	85 aa		9.49	□□□□□ -0.89
NCAPD3-213	ENST00000534532		A0A1B0GU33	70 aa		9.48	□□□□□ -0.89
NCAPD3-213	ENST00000534532	FLG2	Q5D862	2391 aa	Predicted RBP	9.48	□□□□□ -0.89
NCAPD3-213	ENST00000534532	FP248	Q71RG6	208 aa	Predicted RBP	9.47	□□□□□ -0.89
NCAPD3-213	ENST00000534532	LINC00472	Q9H8W2	130 aa		9.45	□□□□□ -0.9
NCAPD3-213	ENST00000534532		Q8N9P0	234 aa	Predicted RBP	9.44	□□□□□ -0.9
NCAPD3-213	ENST00000534532	KRTAP21-3	Q3LHN1	58 aa		9.43	□□□□□ -0.9
NCAPD3-213	ENST00000534532	GCN1	Q92616	2671 aa	Known RBP	9.43	□□□□□ -0.9
NCAPD3-213	ENST00000534532		Q5W150	140 aa		9.41	□□□□□ -0.9
NCAPD3-213	ENST00000534532	DSP	P15924	2871 aa	Known RBP	9.41	□□□□□ -0.9
NCAPD3-213	ENST00000534532	TRANK1	O15050	2925 aa		9.4	□□□□□ -0.9
NCAPD3-213	ENST00000534532	UBR5	O95071	2799 aa	Predicted RBP	9.4	□□□□□ -0.91
NCAPD3-213	ENST00000534532	LINC00483	Q53H64	154 aa		9.39	□□□□□ -0.91
NCAPD3-213	ENST00000534532	HTT	P42858	3142 aa		9.38	□□□□□ -0.91
NCAPD3-213	ENST00000534532		R4GN34	69 aa		9.38	□□□□□ -0.91
NCAPD3-213	ENST00000534532		Q1T7F1	81 aa		9.34	□□□□□ -0.91
NCAPD3-213	ENST00000534532	DMAC1	Q96GE9	116 aa		9.34	□□□□□ -0.91
NCAPD3-213	ENST00000534532	PANO1	I0J062	215 aa		9.33	□□□□□ -0.92
NCAPD3-213	ENST00000534532	STAB2	Q8WWQ8	2551 aa		9.32	□□□□□ -0.92
NCAPD3-213	ENST00000534532	NSD1	Q96L73	2696 aa	Predicted RBP	9.32	□□□□□ -0.92
NCAPD3-213	ENST00000534532	MAP1A	P78559	2803 aa	Predicted RBP	9.3	□□□□□ -0.92
NCAPD3-213	ENST00000534532	LUZP6	Q538Z0	58 aa		9.29	□□□□□ -0.92
NCAPD3-213	ENST00000534532	ITPR2	Q14571	2701 aa		9.28	□□□□□ -0.92
NCAPD3-213	ENST00000534532	DMBT1	Q9UGM3	2413 aa	Predicted RBP	9.27	□□□□□ -0.93
NCAPD3-213	ENST00000534532	KTN1-AS1	Q86SY8	53 aa		9.24	□□□□□ -0.93
NCAPD3-213	ENST00000534532	WDFY4	Q6ZS81	3184 aa		9.24	□□□□□ -0.93
NCAPD3-213	ENST00000534532		A0A087X002	238 aa		9.23	□□□□□ -0.93
NCAPD3-213	ENST00000534532	LCA10	Q71F78	164 aa		9.23	□□□□□ -0.93
NCAPD3-213	ENST00000534532	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	9.22	□□□□□ -0.93
NCAPD3-213	ENST00000534532	LINC01558	Q9Y6Z2	57 aa		9.22	□□□□□ -0.93
NCAPD3-213	ENST00000534532	LAMA3	Q16787	3333 aa		9.22	□□□□□ -0.93
NCAPD3-213	ENST00000534532		Q6ZRN7	208 aa	Predicted RBP	9.21	□□□□□ -0.94
NCAPD3-213	ENST00000534532	CFAP54	Q96N23	3096 aa		9.2	□□□□□ -0.94
NCAPD3-213	ENST00000534532		A0A0C4DFX4	3053 aa		9.2	□□□□□ -0.94
NCAPD3-213	ENST00000534532		Q75L30	129 aa		9.18	□□□□□ -0.94
NCAPD3-213	ENST00000534532	NBEAL2	Q6ZNJ1	2754 aa		9.18	□□□□□ -0.94
NCAPD3-213	ENST00000534532	PCNT	O95613	3336 aa		9.18	□□□□□ -0.94
NCAPD3-213	ENST00000534532	RPS29	P62273	56 aa	Known RBP	9.16	□□□□□ -0.94
NCAPD3-213	ENST00000534532		M0QZ58	72 aa		9.16	□□□□□ -0.94
NCAPD3-213	ENST00000534532	PRUNE2	Q8WUY3	3088 aa		9.13	□□□□□ -0.95
NCAPD3-213	ENST00000534532	PLAC4	Q8WY50	150 aa		9.13	□□□□□ -0.95
NCAPD3-213	ENST00000534532	ITPR1	Q14643	2758 aa		9.13	□□□□□ -0.95
NCAPD3-213	ENST00000534532	FRY	Q5TBA9	3013 aa		9.12	□□□□□ -0.95
NCAPD3-213	ENST00000534532	MKI67	P46013	3256 aa	Known RBP	9.07	□□□□□ -0.96
NCAPD3-213	ENST00000534532	ASB16-AS1	Q495Z4	193 aa		9.07	□□□□□ -0.96
NCAPD3-213	ENST00000534532	TENM4	Q6N022	2769 aa		9.06	□□□□□ -0.96
NCAPD3-213	ENST00000534532	RPL37	P61927	97 aa	Known RBP	9.06	□□□□□ -0.96
NCAPD3-213	ENST00000534532	HIVEP1	P15822	2718 aa		9.04	□□□□□ -0.96
NCAPD3-213	ENST00000534532	FLNC	Q14315	2725 aa		9.04	□□□□□ -0.96
NCAPD3-213	ENST00000534532	KMT2B	Q9UMN6	2715 aa	Predicted RBP	9.04	□□□□□ -0.96
NCAPD3-213	ENST00000534532	TRIO	O75962	3097 aa		9.03	□□□□□ -0.96
NCAPD3-213	ENST00000534532	ADM2	Q7Z4H4	148 aa		9.03	□□□□□ -0.96
NCAPD3-213	ENST00000534532	KRTAP11-1	Q8IUC1	163 aa		9.01	□□□□□ -0.97
NCAPD3-213	ENST00000534532	H1FX-AS1	Q4G0G2	97 aa		9.01	□□□□□ -0.97
NCAPD3-213	ENST00000534532	KRTAP29-1	A8MX34	341 aa	Predicted RBP	8.98	□□□□□ -0.97
NCAPD3-213	ENST00000534532	REV3L	O60673	3130 aa		8.96	□□□□□ -0.98
NCAPD3-213	ENST00000534532	KRTAP13-2	Q52LG2	175 aa		8.95	□□□□□ -0.98
NCAPD3-213	ENST00000534532	BRCA2	P51587	3418 aa		8.94	□□□□□ -0.98
NCAPD3-213	ENST00000534532		Q5XG85	94 aa		8.94	□□□□□ -0.98
NCAPD3-213	ENST00000534532	TACC2	O95359	2948 aa		8.93	□□□□□ -0.98
NCAPD3-213	ENST00000534532	NOTCH2NL	Q7Z3S9	236 aa		8.92	□□□□□ -0.98
NCAPD3-213	ENST00000534532		Q5VV11	94 aa		8.91	□□□□□ -0.98
NCAPD3-213	ENST00000534532	KRTAP7-1	Q8IUC3	87 aa		8.91	□□□□□ -0.98
NCAPD3-213	ENST00000534532	LAMA2	P24043	3122 aa	Known RBP	8.9	□□□□□ -0.98
NCAPD3-213	ENST00000534532	KRTAP13-1	Q8IUC0	172 aa		8.89	□□□□□ -0.99
NCAPD3-213	ENST00000534532	ROMO1	P60602	79 aa		8.88	□□□□□ -0.99
NCAPD3-213	ENST00000534532	CYSTM1	Q9H1C7	97 aa		8.87	□□□□□ -0.99
NCAPD3-213	ENST00000534532	C20orf166-AS1	Q96NR2	134 aa		8.86	□□□□□ -0.99
NCAPD3-213	ENST00000534532	UTP20	O75691	2785 aa	Known RBP	8.85	□□□□□ -0.99
NCAPD3-213	ENST00000534532	VPS13A	Q96RL7	3174 aa		8.82	□□□□□ -1
NCAPD3-213	ENST00000534532	SPATA8	Q6RVD6	105 aa		8.81	□□□□□ -1
NCAPD3-213	ENST00000534532	XIRP2	A4UGR9	3374 aa		8.81	□□□□□ -1
NCAPD3-213	ENST00000534532	ATM	Q13315	3056 aa		8.81	□□□□□ -1
NCAPD3-213	ENST00000534532	COL12A1	Q99715	3063 aa		8.81	□□□□□ -1
NCAPD3-213	ENST00000534532		A8MUU9	505 aa		8.81	□□□□□ -1
NCAPD3-213	ENST00000534532	NIPBL	Q6KC79	2804 aa	eCLIP	8.78	□□□□□ -1
NCAPD3-213	ENST00000534532	PRAC1	Q96KF2	57 aa		8.77	□□□□□ -1.01
NCAPD3-213	ENST00000534532	FRYL	O94915	3013 aa		8.75	□□□□□ -1.01
NCAPD3-213	ENST00000534532	APC	P25054	2843 aa		8.73	□□□□□ -1.01
NCAPD3-213	ENST00000534532	UNC80	Q8N2C7	3258 aa		8.72	□□□□□ -1.01
NCAPD3-213	ENST00000534532	CRYBG3	Q68DQ2	2970 aa		8.72	□□□□□ -1.01
NCAPD3-213	ENST00000534532	DMXL2	Q8TDJ6	3036 aa		8.68	□□□□□ -1.02
NCAPD3-213	ENST00000534532	LRBA	P50851	2863 aa		8.67	□□□□□ -1.02
NCAPD3-213	ENST00000534532		A0A0A0MQY5	61 aa		8.66	□□□□□ -1.02
NCAPD3-213	ENST00000534532	LAMA1	P25391	3075 aa		8.62	□□□□□ -1.03

Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms