RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 TRAPPC2P0DI81 140 aa-0.03□□□□□ -2.41
CD44-238ENST00000534296 TRAPPC2BP0DI82 140 aa-0.03□□□□□ -2.41
CD44-238ENST00000534296 COX6B1P14854 86 aa-0.03□□□□□ -2.41
CD44-238ENST00000534296 ALS2Q96Q42 1657 aa-0.03□□□□□ -2.41
CD44-238ENST00000534296 DDX60Q8IY21 1712 aaKnown RBP-0.04□□□□□ -2.42
CD44-238ENST00000534296 LMO7Q8WWI1 1683 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 M0R2T5 61 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 SPINK4O60575 86 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 DEFB124Q8NES8 71 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 TMEM263Q8WUH6 116 aaKnown RBP-0.04□□□□□ -2.42
CD44-238ENST00000534296 FXYD6Q9H0Q3 95 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 MANBALQ9NQG1 85 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 IER3IP1Q9Y5U9 82 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 ARL2-SNX15V9GYD0 113 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 ATP7AQ04656 1500 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 NLRP1Q9C000 1473 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 DDX60LQ5H9U9 1706 aaKnown RBP-0.04□□□□□ -2.42
CD44-238ENST00000534296 MON2Q7Z3U7 1717 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 KIAA1551Q9HCM1 1747 aa-0.04□□□□□ -2.42
CD44-238ENST00000534296 SYS1-DBNDD2H3BUS1 97 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 I3L2K1 104 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 CORTO00230 105 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 COX6CP09669 75 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 DEFB104AQ8WTQ1 72 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 PRO1933Q9H354 126 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 DPH3P1Q9H4G8 78 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 CDC42SE2Q9NRR3 84 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 ABCC6O95255 1503 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 LMTK2Q8IWU2 1503 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 NSD3Q9BZ95 1437 aa-0.05□□□□□ -2.42
CD44-238ENST00000534296 ABCC1P33527 1531 aa-0.06□□□□□ -2.42
CD44-238ENST00000534296 AGLP35573 1532 aa-0.06□□□□□ -2.42
CD44-238ENST00000534296 A0A1B0GWA3 101 aa-0.06□□□□□ -2.42
CD44-238ENST00000534296 NAP1L6A6NFF2 107 aa-0.06□□□□□ -2.42
CD44-238ENST00000534296 K7EQZ3 153 aa-0.06□□□□□ -2.42
CD44-238ENST00000534296 IGLC1P0CG04 106 aa-0.06□□□□□ -2.42
CD44-238ENST00000534296 GNG4P50150 75 aa-0.06□□□□□ -2.42
CD44-238ENST00000534296 MRPS10P82664 201 aaKnown RBP-0.06□□□□□ -2.42
CD44-238ENST00000534296 C12orf57Q99622 126 aa-0.06□□□□□ -2.42
CD44-238ENST00000534296 ARHGAP35Q9NRY4 1499 aa-0.06□□□□□ -2.42
CD44-238ENST00000534296 ARHGAP5Q13017 1502 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 PDCD11Q14690 1871 aaKnown RBP-0.07□□□□□ -2.42
CD44-238ENST00000534296 TRBV7-4A0A0J9YYF1 115 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 LYNX1G3V0Z9 82 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 S100A1P23297 94 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 PPP3R1P63098 170 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 KRTAP6-1Q3LI64 71 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 KRTAP8-1Q8IUC2 63 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 SPRR4Q96PI1 79 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 GNG8Q9UK08 70 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 CCDC180Q9P1Z9 1646 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 PLXNC1O60486 1568 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 INO80Q9ULG1 1556 aaPredicted RBP-0.07□□□□□ -2.42
CD44-238ENST00000534296 MYO5CQ9NQX4 1742 aa-0.07□□□□□ -2.42
CD44-238ENST00000534296 COX8AP10176 69 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 KRTDAPP60985 99 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 GTF2H5Q6ZYL4 71 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 FAM223AQ8IWN6 122 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 TMEM203Q969S6 136 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 SCAPERQ9BY12 1400 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 CNTLNQ9NXG0 1405 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 C4AP0C0L4 1744 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 TRPM2O94759 1503 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 URB2Q14146 1524 aaKnown RBP-0.08□□□□□ -2.42
CD44-238ENST00000534296 ERICH3Q5RHP9 1530 aa-0.08□□□□□ -2.42
CD44-238ENST00000534296 ANKRD36A6QL64 1941 aa-0.09□□□□□ -2.42
CD44-238ENST00000534296 CDC42BPAQ5VT25 1732 aa-0.09□□□□□ -2.42
CD44-238ENST00000534296 MT1HL1P0DM35 61 aa-0.09□□□□□ -2.42
CD44-238ENST00000534296 USMG5Q96IX5 58 aa-0.09□□□□□ -2.42
CD44-238ENST00000534296 FAM167A-AS1Q96KT0 104 aa-0.09□□□□□ -2.42
CD44-238ENST00000534296 VAMP8Q9BV40 100 aa-0.09□□□□□ -2.42
CD44-238ENST00000534296 PRO1854Q9UHT4 67 aa-0.09□□□□□ -2.42
CD44-238ENST00000534296 ANKRD50Q9ULJ7 1429 aa-0.1□□□□□ -2.43
CD44-238ENST00000534296 CRYM-AS1A6NIL9 109 aa-0.1□□□□□ -2.43
CD44-238ENST00000534296 SPRR1BP22528 89 aa-0.1□□□□□ -2.43
CD44-238ENST00000534296 UBE2D3P61077 147 aa-0.1□□□□□ -2.43
CD44-238ENST00000534296 UBE2D2P62837 147 aa-0.1□□□□□ -2.43
CD44-238ENST00000534296 Q0VG73 95 aa-0.1□□□□□ -2.43
CD44-238ENST00000534296 C10orf113Q5VZT2 155 aa-0.1□□□□□ -2.43
CD44-238ENST00000534296 CFAP74Q9C0B2 1584 aa-0.11□□□□□ -2.43
CD44-238ENST00000534296 MROH2AA6NES4 1674 aa-0.11□□□□□ -2.43
CD44-238ENST00000534296 TROQ12816 1431 aaPredicted RBP-0.11□□□□□ -2.43
CD44-238ENST00000534296 DEFB121Q5J5C9 76 aa-0.11□□□□□ -2.43
CD44-238ENST00000534296 SFTA2Q6UW10 78 aa-0.11□□□□□ -2.43
CD44-238ENST00000534296 C4BP0C0L5 1744 aa-0.11□□□□□ -2.43
CD44-238ENST00000534296 UACAQ9BZF9 1416 aa-0.12□□□□□ -2.43
CD44-238ENST00000534296 PIK3C2BO00750 1634 aa-0.12□□□□□ -2.43
CD44-238ENST00000534296 H3BQ15 152 aa-0.12□□□□□ -2.43
CD44-238ENST00000534296 SAA2P0DJI9 122 aaPredicted RBP-0.12□□□□□ -2.43
CD44-238ENST00000534296 SNCAP37840 140 aa-0.12□□□□□ -2.43
CD44-238ENST00000534296 LINC01600Q96MT4 127 aa-0.12□□□□□ -2.43
CD44-238ENST00000534296 DUOX1Q9NRD9 1551 aa-0.12□□□□□ -2.43
CD44-238ENST00000534296 FAM208AQ9UK61 1670 aaKnown RBP-0.12□□□□□ -2.43
CD44-238ENST00000534296 ABCC8Q09428 1581 aa-0.13□□□□□ -2.43
CD44-238ENST00000534296 SEC11AP67812 179 aa-0.13□□□□□ -2.43
CD44-238ENST00000534296 FANCD2Q9BXW9 1451 aa-0.14□□□□□ -2.43
CD44-238ENST00000534296 MT1BP07438 61 aa-0.14□□□□□ -2.43
CD44-238ENST00000534296 SMIM5Q71RC9 77 aa-0.14□□□□□ -2.43
CD44-238ENST00000534296 DEFB105AQ8NG35 78 aa-0.14□□□□□ -2.43
CD44-238ENST00000534296 CGREF1Q99674 301 aa-0.14□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms