RNA–Protein interactions for RNA: ENST00000531014.5

CTNND1-229, Transcript of catenin delta 1, humanhuman

TSL 1 (best) BASIC

Gene CTNND1, Length 5,053 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNND1-229ENST00000531014 KLK9Q2XQG4 91 aa4.53□□□□□ -1.68
CTNND1-229ENST00000531014 OXTP01178 125 aa4.53□□□□□ -1.68
CTNND1-229ENST00000531014 FLNAP21333 2647 aaKnown RBP4.52□□□□□ -1.69
CTNND1-229ENST00000531014 MMP24-AS1A0A0U1RRL7 71 aa4.52□□□□□ -1.69
CTNND1-229ENST00000531014 SMR3BP02814 79 aaPredicted RBP4.52□□□□□ -1.69
CTNND1-229ENST00000531014 MGAM2Q2M2H8 2515 aa4.51□□□□□ -1.69
CTNND1-229ENST00000531014 C20orf166-AS1Q96NR2 134 aa4.51□□□□□ -1.69
CTNND1-229ENST00000531014 LINC00612Q8N6U2 182 aa4.5□□□□□ -1.69
CTNND1-229ENST00000531014 SETD2Q9BYW2 2564 aaPredicted RBP4.5□□□□□ -1.69
CTNND1-229ENST00000531014 CR1P17927 2039 aa4.5□□□□□ -1.69
CTNND1-229ENST00000531014 KRTAP25-1Q3LHN0 102 aa4.49□□□□□ -1.69
CTNND1-229ENST00000531014 Q5W150 140 aa4.49□□□□□ -1.69
CTNND1-229ENST00000531014 M0QZ58 72 aa4.49□□□□□ -1.69
CTNND1-229ENST00000531014 Q5VSD8 79 aa4.49□□□□□ -1.69
CTNND1-229ENST00000531014 CYSTM1Q9H1C7 97 aa4.49□□□□□ -1.69
CTNND1-229ENST00000531014 ATRQ13535 2644 aa4.49□□□□□ -1.69
CTNND1-229ENST00000531014 TEP1Q99973 2627 aaKnown RBP4.47□□□□□ -1.69
CTNND1-229ENST00000531014 KMT2BQ9UMN6 2715 aaPredicted RBP4.47□□□□□ -1.69
CTNND1-229ENST00000531014 GIG44P09565 113 aaPredicted RBP4.47□□□□□ -1.69
CTNND1-229ENST00000531014 SRCAPQ6ZRS2 3230 aa4.44□□□□□ -1.7
CTNND1-229ENST00000531014 TNRC18O15417 2968 aaPredicted RBP4.44□□□□□ -1.7
CTNND1-229ENST00000531014 SPATA8Q6RVD6 105 aa4.44□□□□□ -1.7
CTNND1-229ENST00000531014 Q8NDZ9 215 aa4.44□□□□□ -1.7
CTNND1-229ENST00000531014 STAB1Q9NY15 2570 aa4.42□□□□□ -1.7
CTNND1-229ENST00000531014 A6NN06 94 aa4.42□□□□□ -1.7
CTNND1-229ENST00000531014 COL6A5A8TX70 2615 aa4.41□□□□□ -1.7
CTNND1-229ENST00000531014 LINC00472Q9H8W2 130 aa4.39□□□□□ -1.71
CTNND1-229ENST00000531014 WDR87Q6ZQQ6 2873 aa4.38□□□□□ -1.71
CTNND1-229ENST00000531014 ADM2Q7Z4H4 148 aa4.37□□□□□ -1.71
CTNND1-229ENST00000531014 CHD9Q3L8U1 2897 aa4.37□□□□□ -1.71
CTNND1-229ENST00000531014 Q6ZR54 194 aa4.35□□□□□ -1.71
CTNND1-229ENST00000531014 TRANK1O15050 2925 aa4.34□□□□□ -1.71
CTNND1-229ENST00000531014 SPRR1BP22528 89 aa4.33□□□□□ -1.72
CTNND1-229ENST00000531014 PANO1I0J062 215 aa4.33□□□□□ -1.72
CTNND1-229ENST00000531014 C10orf95Q9H7T3 257 aa4.32□□□□□ -1.72
CTNND1-229ENST00000531014 SPRR1AP35321 89 aa4.31□□□□□ -1.72
CTNND1-229ENST00000531014 A0A087X002 238 aa4.3□□□□□ -1.72
CTNND1-229ENST00000531014 KRTAP26-1Q6PEX3 210 aa4.3□□□□□ -1.72
CTNND1-229ENST00000531014 A8MU10 97 aa4.28□□□□□ -1.72
CTNND1-229ENST00000531014 PLAC8Q9NZF1 115 aa4.28□□□□□ -1.72
CTNND1-229ENST00000531014 PP632Q6XCG6 107 aa4.27□□□□□ -1.73
CTNND1-229ENST00000531014 CENPFP49454 3210 aa4.27□□□□□ -1.73
CTNND1-229ENST00000531014 DMBT1Q9UGM3 2413 aaPredicted RBP4.26□□□□□ -1.73
CTNND1-229ENST00000531014 NOTCH1P46531 2555 aa4.26□□□□□ -1.73
CTNND1-229ENST00000531014 A8MUU9 505 aa4.26□□□□□ -1.73
CTNND1-229ENST00000531014 TNP1P09430 55 aa4.25□□□□□ -1.73
CTNND1-229ENST00000531014 ASH1LQ9NR48 2969 aaKnown RBP4.25□□□□□ -1.73
CTNND1-229ENST00000531014 CHD7Q9P2D1 2997 aa4.25□□□□□ -1.73
CTNND1-229ENST00000531014 HIVEP1P15822 2718 aa4.25□□□□□ -1.73
CTNND1-229ENST00000531014 AKAP13Q12802 2813 aa4.24□□□□□ -1.73
CTNND1-229ENST00000531014 UBR5O95071 2799 aaPredicted RBP4.23□□□□□ -1.73
CTNND1-229ENST00000531014 TENM4Q6N022 2769 aa4.23□□□□□ -1.73
CTNND1-229ENST00000531014 KRTAP29-1A8MX34 341 aaPredicted RBP4.23□□□□□ -1.73
CTNND1-229ENST00000531014 KRTAP11-1Q8IUC1 163 aa4.23□□□□□ -1.73
CTNND1-229ENST00000531014 KRTAP10-1P60331 282 aa4.23□□□□□ -1.73
CTNND1-229ENST00000531014 ITPR2Q14571 2701 aa4.22□□□□□ -1.73
CTNND1-229ENST00000531014 NBEAL1Q6ZS30 2694 aa4.21□□□□□ -1.74
CTNND1-229ENST00000531014 HTTP42858 3142 aa4.21□□□□□ -1.74
CTNND1-229ENST00000531014 TEX15Q9BXT5 2789 aa4.21□□□□□ -1.74
CTNND1-229ENST00000531014 DSPP15924 2871 aaKnown RBP4.2□□□□□ -1.74
CTNND1-229ENST00000531014 CENPEQ02224 2701 aa4.2□□□□□ -1.74
CTNND1-229ENST00000531014 KRTAP10-2P60368 255 aa4.19□□□□□ -1.74
CTNND1-229ENST00000531014 GOLGB1Q14789 3259 aaKnown RBP4.18□□□□□ -1.74
CTNND1-229ENST00000531014 KRTAP4-16G5E9R7 235 aaPredicted RBP4.18□□□□□ -1.74
CTNND1-229ENST00000531014 STAB2Q8WWQ8 2551 aa4.16□□□□□ -1.74
CTNND1-229ENST00000531014 BPTFQ12830 3046 aa4.16□□□□□ -1.74
CTNND1-229ENST00000531014 UTRNP46939 3433 aa4.13□□□□□ -1.75
CTNND1-229ENST00000531014 RANBP2P49792 3224 aaKnown RBP4.12□□□□□ -1.75
CTNND1-229ENST00000531014 NSD1Q96L73 2696 aaPredicted RBP4.12□□□□□ -1.75
CTNND1-229ENST00000531014 P0C880 135 aa4.12□□□□□ -1.75
CTNND1-229ENST00000531014 NOTCH2NLQ7Z3S9 236 aa4.08□□□□□ -1.76
CTNND1-229ENST00000531014 KRTAP1-5Q9BYS1 174 aa4.07□□□□□ -1.76
CTNND1-229ENST00000531014 FLNCQ14315 2725 aa4.06□□□□□ -1.76
CTNND1-229ENST00000531014 APCP25054 2843 aa4.04□□□□□ -1.76
CTNND1-229ENST00000531014 ITPR1Q14643 2758 aa4.04□□□□□ -1.76
CTNND1-229ENST00000531014 Q6ZRN7 208 aaPredicted RBP4.03□□□□□ -1.76
CTNND1-229ENST00000531014 A0A1B0GVY2 172 aa4.02□□□□□ -1.77
CTNND1-229ENST00000531014 RPS29P62273 56 aaKnown RBP4.02□□□□□ -1.77
CTNND1-229ENST00000531014 MAP1AP78559 2803 aaPredicted RBP4.02□□□□□ -1.77
CTNND1-229ENST00000531014 KRTAP10-8P60410 259 aa4.01□□□□□ -1.77
CTNND1-229ENST00000531014 USP34Q70CQ2 3546 aa4.01□□□□□ -1.77
CTNND1-229ENST00000531014 MGAQ8IWI9 3026 aa4□□□□□ -1.77
CTNND1-229ENST00000531014 FBN3Q75N90 2809 aa4□□□□□ -1.77
CTNND1-229ENST00000531014 DNAH12Q6ZR08 3092 aa3.99□□□□□ -1.77
CTNND1-229ENST00000531014 PCNTO95613 3336 aa3.98□□□□□ -1.77
CTNND1-229ENST00000531014 EYSQ5T1H1 3165 aa3.92□□□□□ -1.78
CTNND1-229ENST00000531014 UTP20O75691 2785 aaKnown RBP3.92□□□□□ -1.78
CTNND1-229ENST00000531014 PRRC2CQ9Y520 2896 aaKnown RBP3.92□□□□□ -1.78
CTNND1-229ENST00000531014 LAMA3Q16787 3333 aa3.92□□□□□ -1.78
CTNND1-229ENST00000531014 A0A0C4DFX4 3053 aa3.9□□□□□ -1.79
CTNND1-229ENST00000531014 H0YAA0 97 aa3.9□□□□□ -1.79
CTNND1-229ENST00000531014 CFAP54Q96N23 3096 aa3.9□□□□□ -1.79
CTNND1-229ENST00000531014 PRUNE2Q8WUY3 3088 aa3.89□□□□□ -1.79
CTNND1-229ENST00000531014 FBN2P35556 2912 aa3.86□□□□□ -1.79
CTNND1-229ENST00000531014 TPRXLQ17RH7 258 aa3.86□□□□□ -1.79
CTNND1-229ENST00000531014 COL6A3P12111 3177 aa3.86□□□□□ -1.79
CTNND1-229ENST00000531014 MKI67P46013 3256 aaKnown RBP3.85□□□□□ -1.79
CTNND1-229ENST00000531014 PRO2289Q9P1D8 64 aa3.85□□□□□ -1.79
CTNND1-229ENST00000531014 C5orf42Q9H799 3197 aa3.84□□□□□ -1.79
CTNND1-229ENST00000531014 KRTAP13-2Q52LG2 175 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms