RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 DHRS4-AS1Q9P1J3 65 aa3.72□□□□□ -1.81
CD44-225ENST00000527326 C1orf134Q5TEV5 83 aa3.71□□□□□ -1.82
CD44-225ENST00000527326 CSAG1Q6PB30 78 aa3.71□□□□□ -1.82
CD44-225ENST00000527326 SPATA8Q6RVD6 105 aa3.71□□□□□ -1.82
CD44-225ENST00000527326 Q8N377 158 aa3.71□□□□□ -1.82
CD44-225ENST00000527326 PKDREJQ9NTG1 2253 aa3.7□□□□□ -1.82
CD44-225ENST00000527326 IGLV5-37A0A075B6J1 123 aa3.7□□□□□ -1.82
CD44-225ENST00000527326 DEFB131BA0A096LNP1 70 aa3.7□□□□□ -1.82
CD44-225ENST00000527326 C11orf71Q6IPW1 123 aa3.7□□□□□ -1.82
CD44-225ENST00000527326 UNQ6190/PRO20217Q6UXQ8 127 aa3.7□□□□□ -1.82
CD44-225ENST00000527326 WNK2Q9Y3S1 2297 aa3.69□□□□□ -1.82
CD44-225ENST00000527326 IGLV1-50A0A075B6I6 118 aa3.69□□□□□ -1.82
CD44-225ENST00000527326 WFDC10BQ8IUB3 73 aa3.69□□□□□ -1.82
CD44-225ENST00000527326 XAGE1AQ9HD64 81 aa3.69□□□□□ -1.82
CD44-225ENST00000527326 NOP10Q9NPE3 64 aaKnown RBP3.69□□□□□ -1.82
CD44-225ENST00000527326 ROMO1P60602 79 aa3.68□□□□□ -1.82
CD44-225ENST00000527326 Q6ZR54 194 aa3.68□□□□□ -1.82
CD44-225ENST00000527326 TP53AIP1Q9HCN2 124 aa3.68□□□□□ -1.82
CD44-225ENST00000527326 ZNF469Q96JG9 3925 aaPredicted RBP3.68□□□□□ -1.82
CD44-225ENST00000527326 ANKHD1Q8IWZ3 2542 aaKnown RBP3.67□□□□□ -1.82
CD44-225ENST00000527326 H3BUX3 64 aa3.67□□□□□ -1.82
CD44-225ENST00000527326 HRES1P13985 223 aa3.67□□□□□ -1.82
CD44-225ENST00000527326 REG3AQ06141 175 aa3.67□□□□□ -1.82
CD44-225ENST00000527326 LY6EQ16553 131 aa3.67□□□□□ -1.82
CD44-225ENST00000527326 DEFB105AQ8NG35 78 aa3.67□□□□□ -1.82
CD44-225ENST00000527326 C7orf33Q8WU49 177 aa3.67□□□□□ -1.82
CD44-225ENST00000527326 ABCA2Q9BZC7 2435 aa3.67□□□□□ -1.82
CD44-225ENST00000527326 APCP25054 2843 aa3.67□□□□□ -1.82
CD44-225ENST00000527326 CCDC168Q8NDH2 2452 aa3.67□□□□□ -1.82
CD44-225ENST00000527326 NIPBLQ6KC79 2804 aaeCLIP3.66□□□□□ -1.82
CD44-225ENST00000527326 CMC4P56277 68 aaPredicted RBP3.66□□□□□ -1.82
CD44-225ENST00000527326 EGFEM1PQ0D2K5 195 aa3.66□□□□□ -1.82
CD44-225ENST00000527326 REG3GQ6UW15 175 aa3.66□□□□□ -1.82
CD44-225ENST00000527326 CLPSL2Q6UWE3 100 aa3.66□□□□□ -1.82
CD44-225ENST00000527326 C6orf48Q9UBA6 75 aa3.66□□□□□ -1.82
CD44-225ENST00000527326 NBEAL1Q6ZS30 2694 aa3.66□□□□□ -1.82
CD44-225ENST00000527326 A8MWP4 228 aa3.65□□□□□ -1.83
CD44-225ENST00000527326 MIR22HGQ0VDD5 57 aa3.65□□□□□ -1.83
CD44-225ENST00000527326 DEFB116Q30KQ4 102 aa3.65□□□□□ -1.83
CD44-225ENST00000527326 SORL1Q92673 2214 aa3.64□□□□□ -1.83
CD44-225ENST00000527326 UQCR11O14957 56 aa3.64□□□□□ -1.83
CD44-225ENST00000527326 ANGP03950 147 aaKnown RBP3.64□□□□□ -1.83
CD44-225ENST00000527326 SEC61BP60468 96 aaKnown RBP3.64□□□□□ -1.83
CD44-225ENST00000527326 BRD3OSQ6XYD6 125 aa3.64□□□□□ -1.83
CD44-225ENST00000527326 PCOTHQ58A44 107 aa3.63□□□□□ -1.83
CD44-225ENST00000527326 Q6ZRX8 168 aa3.63□□□□□ -1.83
CD44-225ENST00000527326 CSNK1G2-AS1Q8NCQ2 148 aa3.63□□□□□ -1.83
CD44-225ENST00000527326 IGLV8-61A0A075B6I0 122 aa3.62□□□□□ -1.83
CD44-225ENST00000527326 IGLV10-54A0A075B6I4 117 aa3.62□□□□□ -1.83
CD44-225ENST00000527326 A0A1B0GU69 56 aa3.62□□□□□ -1.83
CD44-225ENST00000527326 TACC2O95359 2948 aa3.61□□□□□ -1.83
CD44-225ENST00000527326 INAFM1C9JVW0 142 aa3.61□□□□□ -1.83
CD44-225ENST00000527326 ACYP2P14621 99 aa3.61□□□□□ -1.83
CD44-225ENST00000527326 KRTAP25-1Q3LHN0 102 aa3.61□□□□□ -1.83
CD44-225ENST00000527326 CAMK2N2Q96S95 79 aa3.61□□□□□ -1.83
CD44-225ENST00000527326 PRO0255Q9UI72 69 aa3.61□□□□□ -1.83
CD44-225ENST00000527326 PRRC2CQ9Y520 2896 aaKnown RBP3.61□□□□□ -1.83
CD44-225ENST00000527326 IGKV2-24A0A0C4DH68 120 aa3.6□□□□□ -1.83
CD44-225ENST00000527326 RPL37AP8A6NKH3 93 aa3.6□□□□□ -1.83
CD44-225ENST00000527326 ZNF861PO60384 105 aa3.6□□□□□ -1.83
CD44-225ENST00000527326 KRTAP10-9P60411 292 aa3.6□□□□□ -1.83
CD44-225ENST00000527326 ATRQ13535 2644 aa3.6□□□□□ -1.83
CD44-225ENST00000527326 VPS13CQ709C8 3753 aa3.59□□□□□ -1.83
CD44-225ENST00000527326 FBN1P35555 2871 aaKnown RBP3.59□□□□□ -1.83
CD44-225ENST00000527326 ACANP16112 2415 aa3.59□□□□□ -1.83
CD44-225ENST00000527326 A0A087WSZ3 146 aa3.59□□□□□ -1.83
CD44-225ENST00000527326 MMP24-AS1A0A0U1RRL7 71 aa3.59□□□□□ -1.83
CD44-225ENST00000527326 SPRR1AP35321 89 aa3.59□□□□□ -1.83
CD44-225ENST00000527326 DEFB113Q30KQ7 82 aa3.59□□□□□ -1.83
CD44-225ENST00000527326 IGFL1Q6UW32 110 aa3.59□□□□□ -1.83
CD44-225ENST00000527326 PRR34Q9NV39 138 aa3.59□□□□□ -1.83
CD44-225ENST00000527326 DCHS2Q6V1P9 2916 aa3.59□□□□□ -1.84
CD44-225ENST00000527326 CR1P17927 2039 aa3.58□□□□□ -1.84
CD44-225ENST00000527326 FN1P02751 2386 aaKnown RBP3.58□□□□□ -1.84
CD44-225ENST00000527326 KRTAP4-16G5E9R7 235 aaPredicted RBP3.58□□□□□ -1.84
CD44-225ENST00000527326 RPL37AP61513 92 aaKnown RBP3.58□□□□□ -1.84
CD44-225ENST00000527326 LCE1AQ5T7P2 110 aa3.58□□□□□ -1.84
CD44-225ENST00000527326 C4orf3Q8WVX3 66 aa3.58□□□□□ -1.84
CD44-225ENST00000527326 STAB1Q9NY15 2570 aa3.57□□□□□ -1.84
CD44-225ENST00000527326 JMJD1CQ15652 2540 aa3.57□□□□□ -1.84
CD44-225ENST00000527326 C10orf99Q6UWK7 81 aa3.57□□□□□ -1.84
CD44-225ENST00000527326 LINC00472Q9H8W2 130 aa3.57□□□□□ -1.84
CD44-225ENST00000527326 ANK3Q12955 4377 aaKnown RBP3.57□□□□□ -1.84
CD44-225ENST00000527326 MAP1AP78559 2803 aaPredicted RBP3.57□□□□□ -1.84
CD44-225ENST00000527326 IGLV5-52A0A0A0MRZ9 124 aa3.56□□□□□ -1.84
CD44-225ENST00000527326 MSMBP08118 114 aa3.56□□□□□ -1.84
CD44-225ENST00000527326 GIG44P09565 113 aaPredicted RBP3.56□□□□□ -1.84
CD44-225ENST00000527326 DEFB136Q30KP8 78 aa3.56□□□□□ -1.84
CD44-225ENST00000527326 LELP1Q5T871 98 aa3.56□□□□□ -1.84
CD44-225ENST00000527326 COL6A5A8TX70 2615 aa3.56□□□□□ -1.84
CD44-225ENST00000527326 CSPG4Q6UVK1 2322 aa3.55□□□□□ -1.84
CD44-225ENST00000527326 HIVEP2P31629 2446 aa3.55□□□□□ -1.84
CD44-225ENST00000527326 CUBNO60494 3623 aa3.55□□□□□ -1.84
CD44-225ENST00000527326 WNK1Q9H4A3 2382 aa3.54□□□□□ -1.84
CD44-225ENST00000527326 DEFB130BP0DP73 79 aa3.54□□□□□ -1.84
CD44-225ENST00000527326 DEFB130AP0DP74 79 aa3.54□□□□□ -1.84
CD44-225ENST00000527326 LINC00483Q53H64 154 aa3.54□□□□□ -1.84
CD44-225ENST00000527326 CCL19Q99731 98 aa3.54□□□□□ -1.84
CD44-225ENST00000527326 ANK2Q01484 3957 aa3.54□□□□□ -1.84
CD44-225ENST00000527326 AKAP6Q13023 2319 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms