RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 CNOT1A5YKK6 2376 aaKnown RBP1.16□□□□□ -2.22
CD44-216ENST00000525293 PRRC2BQ5JSZ5 2229 aaKnown RBP1.16□□□□□ -2.22
CD44-216ENST00000525293 RP1P56715 2156 aa1.16□□□□□ -2.22
CD44-216ENST00000525293 AHNAK2Q8IVF2 5795 aa1.16□□□□□ -2.22
CD44-216ENST00000525293 A0A096LNT2 108 aa1.15□□□□□ -2.23
CD44-216ENST00000525293 RPL39P62891 51 aaKnown RBP1.15□□□□□ -2.23
CD44-216ENST00000525293 KRTAP21-2Q3LI59 83 aa1.15□□□□□ -2.23
CD44-216ENST00000525293 Q6ZRX8 168 aa1.15□□□□□ -2.23
CD44-216ENST00000525293 KRTAP13-1Q8IUC0 172 aa1.15□□□□□ -2.23
CD44-216ENST00000525293 Q8IZM0 81 aa1.15□□□□□ -2.23
CD44-216ENST00000525293 LEAP2Q969E1 77 aa1.15□□□□□ -2.23
CD44-216ENST00000525293 RPL39LQ96EH5 51 aaKnown RBP1.15□□□□□ -2.23
CD44-216ENST00000525293 USP9YO00507 2555 aaPredicted RBP1.15□□□□□ -2.23
CD44-216ENST00000525293 CEP250Q9BV73 2442 aa1.15□□□□□ -2.23
CD44-216ENST00000525293 TNRC6CQ9HCJ0 1690 aaKnown RBP1.14□□□□□ -2.23
CD44-216ENST00000525293 MUC6Q6W4X9 2439 aa1.14□□□□□ -2.23
CD44-216ENST00000525293 DEFB131BA0A096LNP1 70 aa1.14□□□□□ -2.23
CD44-216ENST00000525293 KRTAP13-2Q52LG2 175 aa1.14□□□□□ -2.23
CD44-216ENST00000525293 SPEGQ15772 3267 aa1.14□□□□□ -2.23
CD44-216ENST00000525293 TLN1Q9Y490 2541 aaKnown RBP1.14□□□□□ -2.23
CD44-216ENST00000525293 UBR5O95071 2799 aaPredicted RBP1.13□□□□□ -2.23
CD44-216ENST00000525293 SSC5DA1L4H1 1573 aa1.13□□□□□ -2.23
CD44-216ENST00000525293 GVQW2A0A096LPI5 108 aaPredicted RBP1.13□□□□□ -2.23
CD44-216ENST00000525293 I3L2K1 104 aa1.13□□□□□ -2.23
CD44-216ENST00000525293 INE1O15225 51 aa1.13□□□□□ -2.23
CD44-216ENST00000525293 POLR2KP53803 58 aaKnown RBP1.13□□□□□ -2.23
CD44-216ENST00000525293 PIGYQ3MUY2 71 aa1.13□□□□□ -2.23
CD44-216ENST00000525293 PCOTHQ58A44 107 aa1.13□□□□□ -2.23
CD44-216ENST00000525293 LINC00575Q6W349 94 aa1.13□□□□□ -2.23
CD44-216ENST00000525293 ZFHX3Q15911 3703 aa1.13□□□□□ -2.23
CD44-216ENST00000525293 ALPK2Q86TB3 2170 aa1.13□□□□□ -2.23
CD44-216ENST00000525293 CENPFP49454 3210 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 K7EQZ3 153 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 LY6G6CO95867 125 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 KRTAP20-1Q3LI63 56 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 Q6ZRN7 208 aaPredicted RBP1.12□□□□□ -2.23
CD44-216ENST00000525293 DEFB104AQ8WTQ1 72 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 PLAC4Q8WY50 150 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 C10orf95Q9H7T3 257 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 MUC3AQ02505 3323 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 PRR14LQ5THK1 2151 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 TNCP24821 2201 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 CEP295Q9C0D2 2601 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 HERC1Q15751 4861 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 UTP20O75691 2785 aaKnown RBP1.12□□□□□ -2.23
CD44-216ENST00000525293 CSMD1Q96PZ7 3565 aa1.12□□□□□ -2.23
CD44-216ENST00000525293 AHNAKQ09666 5890 aaKnown RBP1.12□□□□□ -2.23
CD44-216ENST00000525293 NSD1Q96L73 2696 aaPredicted RBP1.12□□□□□ -2.23
CD44-216ENST00000525293 COL27A1Q8IZC6 1860 aaPredicted RBP1.12□□□□□ -2.23
CD44-216ENST00000525293 BRCA2P51587 3418 aa1.11□□□□□ -2.23
CD44-216ENST00000525293 ACACBO00763 2458 aa1.11□□□□□ -2.23
CD44-216ENST00000525293 GOLGA4Q13439 2230 aaKnown RBP1.11□□□□□ -2.23
CD44-216ENST00000525293 SPTY2D1-AS1A0A0U1RR47 76 aa1.11□□□□□ -2.23
CD44-216ENST00000525293 ANGP03950 147 aaKnown RBP1.11□□□□□ -2.23
CD44-216ENST00000525293 PRR9Q5T870 116 aa1.11□□□□□ -2.23
CD44-216ENST00000525293 LELP1Q5T871 98 aa1.11□□□□□ -2.23
CD44-216ENST00000525293 WFDC13Q8IUB5 93 aa1.11□□□□□ -2.23
CD44-216ENST00000525293 EP300Q09472 2414 aaPredicted RBP1.11□□□□□ -2.23
CD44-216ENST00000525293 COL4A2P08572 1712 aa1.11□□□□□ -2.23
CD44-216ENST00000525293 RELNP78509 3460 aa1.11□□□□□ -2.23
CD44-216ENST00000525293 SPAG17Q6Q759 2223 aa1.11□□□□□ -2.23
CD44-216ENST00000525293 SEC16AO15027 2179 aa1.1□□□□□ -2.23
CD44-216ENST00000525293 SHANK1Q9Y566 2161 aa1.1□□□□□ -2.23
CD44-216ENST00000525293 MEGF8Q7Z7M0 2845 aa1.1□□□□□ -2.23
CD44-216ENST00000525293 BSNQ9UPA5 3926 aa1.1□□□□□ -2.23
CD44-216ENST00000525293 MRPL33O75394 65 aaKnown RBP1.1□□□□□ -2.23
CD44-216ENST00000525293 KRTAP12-4P60329 112 aa1.1□□□□□ -2.23
CD44-216ENST00000525293 TEX15Q9BXT5 2789 aa1.1□□□□□ -2.23
CD44-216ENST00000525293 MUC5BQ9HC84 5762 aaPredicted RBP1.09□□□□□ -2.23
CD44-216ENST00000525293 H0YAA0 97 aa1.09□□□□□ -2.23
CD44-216ENST00000525293 KRTAP12-3P60328 96 aa1.09□□□□□ -2.23
CD44-216ENST00000525293 BRD3OSQ6XYD6 125 aa1.09□□□□□ -2.23
CD44-216ENST00000525293 DEFB106AQ8N104 65 aa1.09□□□□□ -2.23
CD44-216ENST00000525293 F5P12259 2224 aa1.08□□□□□ -2.24
CD44-216ENST00000525293 ASPMQ8IZT6 3477 aa1.08□□□□□ -2.24
CD44-216ENST00000525293 PRCDQ00LT1 54 aa1.08□□□□□ -2.24
CD44-216ENST00000525293 COX6A2Q02221 97 aa1.08□□□□□ -2.24
CD44-216ENST00000525293 MINOS1Q5TGZ0 78 aa1.08□□□□□ -2.24
CD44-216ENST00000525293 WFDC10BQ8IUB3 73 aa1.08□□□□□ -2.24
CD44-216ENST00000525293 TECTAO75443 2155 aa1.08□□□□□ -2.24
CD44-216ENST00000525293 CFAP54Q96N23 3096 aa1.08□□□□□ -2.24
CD44-216ENST00000525293 SONP18583 2426 aaKnown RBP1.08□□□□□ -2.24
CD44-216ENST00000525293 SSPOA2VEC9 5147 aa1.07□□□□□ -2.24
CD44-216ENST00000525293 MED13LQ71F56 2210 aa1.07□□□□□ -2.24
CD44-216ENST00000525293 CEP290O15078 2479 aa1.07□□□□□ -2.24
CD44-216ENST00000525293 IGKV2-24A0A0C4DH68 120 aa1.07□□□□□ -2.24
CD44-216ENST00000525293 MRPL34Q9BQ48 92 aaKnown RBP1.07□□□□□ -2.24
CD44-216ENST00000525293 BRWD1Q9NSI6 2320 aa1.07□□□□□ -2.24
CD44-216ENST00000525293 C5orf42Q9H799 3197 aa1.07□□□□□ -2.24
CD44-216ENST00000525293 LYNX1G3V0Z9 82 aa1.06□□□□□ -2.24
CD44-216ENST00000525293 Q6ZSA8 131 aa1.06□□□□□ -2.24
CD44-216ENST00000525293 C6orf48Q9UBA6 75 aa1.06□□□□□ -2.24
CD44-216ENST00000525293 DSTQ03001 7570 aaKnown RBP1.06□□□□□ -2.24
CD44-216ENST00000525293 ITPR1Q14643 2758 aa1.06□□□□□ -2.24
CD44-216ENST00000525293 AKAP13Q12802 2813 aa1.06□□□□□ -2.24
CD44-216ENST00000525293 LAMA3Q16787 3333 aa1.05□□□□□ -2.24
CD44-216ENST00000525293 TLN2Q9Y4G6 2542 aa1.05□□□□□ -2.24
CD44-216ENST00000525293 CDH23Q9H251 3354 aa1.05□□□□□ -2.24
CD44-216ENST00000525293 A8MTW9 85 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms