RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 ASB16-AS1Q495Z4 193 aa11.56□□□□□ -0.56
VPS28-203ENST00000524521 RAB37Q96AX2 223 aa11.56□□□□□ -0.56
VPS28-203ENST00000524521 C2orf91Q6ZV80 131 aa11.55□□□□□ -0.56
VPS28-203ENST00000524521 SEC61BP60468 96 aaKnown RBP11.54□□□□□ -0.56
VPS28-203ENST00000524521 SMIM6P0DI80 62 aa11.53□□□□□ -0.56
VPS28-203ENST00000524521 XP32Q5T750 250 aa11.52□□□□□ -0.57
VPS28-203ENST00000524521 Q5XG85 94 aa11.52□□□□□ -0.57
VPS28-203ENST00000524521 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.52□□□□□ -0.57
VPS28-203ENST00000524521 UQCR10Q9UDW1 63 aa11.51□□□□□ -0.57
VPS28-203ENST00000524521 A0A0B4J2C4 111 aa11.5□□□□□ -0.57
VPS28-203ENST00000524521 LOC105371267A0A1B0GV96 52 aa11.49□□□□□ -0.57
VPS28-203ENST00000524521 CEND1Q8N111 149 aa11.49□□□□□ -0.57
VPS28-203ENST00000524521 C9orf92A6NGG3 77 aa11.48□□□□□ -0.57
VPS28-203ENST00000524521 C1orf195Q5TG92 126 aa11.48□□□□□ -0.57
VPS28-203ENST00000524521 OCIAD2Q56VL3 154 aa11.47□□□□□ -0.57
VPS28-203ENST00000524521 Q6JHZ5 121 aa11.47□□□□□ -0.57
VPS28-203ENST00000524521 SNHG12Q9BXW3 62 aa11.47□□□□□ -0.57
VPS28-203ENST00000524521 IGLV8-61A0A075B6I0 122 aa11.45□□□□□ -0.58
VPS28-203ENST00000524521 H0YGX0 51 aa11.45□□□□□ -0.58
VPS28-203ENST00000524521 SNCGO76070 127 aa11.45□□□□□ -0.58
VPS28-203ENST00000524521 TCL1BO95988 128 aa11.45□□□□□ -0.58
VPS28-203ENST00000524521 PPDPFLQ8WWR9 84 aa11.45□□□□□ -0.58
VPS28-203ENST00000524521 TMEM238LA0A1B0GVL6 79 aa11.44□□□□□ -0.58
VPS28-203ENST00000524521 A6NJY4 79 aa11.44□□□□□ -0.58
VPS28-203ENST00000524521 HSD52Q0P140 79 aa11.43□□□□□ -0.58
VPS28-203ENST00000524521 IGFL1Q6UW32 110 aa11.43□□□□□ -0.58
VPS28-203ENST00000524521 KRTAP4-1Q9BYQ7 146 aa11.43□□□□□ -0.58
VPS28-203ENST00000524521 PRO1854Q9UHT4 67 aa11.43□□□□□ -0.58
VPS28-203ENST00000524521 FXYD2P54710 66 aa11.42□□□□□ -0.58
VPS28-203ENST00000524521 CLEC2BQ92478 149 aa11.42□□□□□ -0.58
VPS28-203ENST00000524521 FAM218AQ96MZ4 157 aa11.41□□□□□ -0.58
VPS28-203ENST00000524521 TRBV7-7A0A0K0K1E9 115 aa11.38□□□□□ -0.59
VPS28-203ENST00000524521 H3BUT2 72 aa11.38□□□□□ -0.59
VPS28-203ENST00000524521 LCE2AQ5TA79 106 aaPredicted RBP11.38□□□□□ -0.59
VPS28-203ENST00000524521 FAT4Q6V0I7 4981 aa11.35□□□□□ -0.59
VPS28-203ENST00000524521 TSTD3H0UI37 97 aa11.34□□□□□ -0.59
VPS28-203ENST00000524521 PCOTHQ58A44 107 aa11.34□□□□□ -0.59
VPS28-203ENST00000524521 A0A1B0GX51 115 aa11.32□□□□□ -0.6
VPS28-203ENST00000524521 TRIAP1O43715 76 aa11.32□□□□□ -0.6
VPS28-203ENST00000524521 NDUFV3P56181 108 aaKnown RBP11.32□□□□□ -0.6
VPS28-203ENST00000524521 K7ERJ3 54 aa11.29□□□□□ -0.6
VPS28-203ENST00000524521 GHRHP01286 108 aa11.29□□□□□ -0.6
VPS28-203ENST00000524521 FABP2P12104 132 aa11.29□□□□□ -0.6
VPS28-203ENST00000524521 PSMB2P49721 201 aa11.28□□□□□ -0.6
VPS28-203ENST00000524521 H3BMG7 143 aa11.26□□□□□ -0.61
VPS28-203ENST00000524521 M0R143 59 aa11.26□□□□□ -0.61
VPS28-203ENST00000524521 LST1O00453 97 aa11.25□□□□□ -0.61
VPS28-203ENST00000524521 Q6Q795 121 aa11.24□□□□□ -0.61
VPS28-203ENST00000524521 TEN1Q86WV5 123 aa11.24□□□□□ -0.61
VPS28-203ENST00000524521 COX6CP09669 75 aa11.23□□□□□ -0.61
VPS28-203ENST00000524521 DNAL4O96015 105 aa11.22□□□□□ -0.61
VPS28-203ENST00000524521 RPL37P61927 97 aaKnown RBP11.22□□□□□ -0.61
VPS28-203ENST00000524521 SS18L2Q9UHA2 77 aa11.21□□□□□ -0.61
VPS28-203ENST00000524521 ORMDL1Q9P0S3 153 aa11.19□□□□□ -0.62
VPS28-203ENST00000524521 A0A087WSZ3 146 aa11.17□□□□□ -0.62
VPS28-203ENST00000524521 OBSCN-AS1Q96MR7 158 aa11.16□□□□□ -0.62
VPS28-203ENST00000524521 H3BQ85 93 aa11.15□□□□□ -0.62
VPS28-203ENST00000524521 A0A1B0GV72 72 aa11.14□□□□□ -0.63
VPS28-203ENST00000524521 A0A1W2PNM2 257 aa11.13□□□□□ -0.63
VPS28-203ENST00000524521 TMEM256-PLSCR3K7ERE1 68 aa11.13□□□□□ -0.63
VPS28-203ENST00000524521 SCGB1C2P0DMR2 95 aa11.13□□□□□ -0.63
VPS28-203ENST00000524521 ANKRD29Q8N6D5 301 aa11.13□□□□□ -0.63
VPS28-203ENST00000524521 BATFQ16520 125 aa11.11□□□□□ -0.63
VPS28-203ENST00000524521 LCE2CQ5TA81 110 aa11.1□□□□□ -0.63
VPS28-203ENST00000524521 KRTAP19-2Q3LHN2 52 aa11.08□□□□□ -0.64
VPS28-203ENST00000524521 Q96NJ1 140 aa11.08□□□□□ -0.64
VPS28-203ENST00000524521 TRACP01848 142 aa11.07□□□□□ -0.64
VPS28-203ENST00000524521 KRTAP9-2Q9BYQ4 174 aa11.06□□□□□ -0.64
VPS28-203ENST00000524521 TRBV7-4A0A0J9YYF1 115 aa11.05□□□□□ -0.64
VPS28-203ENST00000524521 UBE2V1Q13404 147 aa11.05□□□□□ -0.64
VPS28-203ENST00000524521 ATP11AUNQ6ZP68 121 aa11.05□□□□□ -0.64
VPS28-203ENST00000524521 Q75L30 129 aa11.05□□□□□ -0.64
VPS28-203ENST00000524521 CCKP06307 115 aa11.01□□□□□ -0.65
VPS28-203ENST00000524521 SIGMAR1Q99720 223 aa11□□□□□ -0.65
VPS28-203ENST00000524521 BAALC-AS2P0C853 105 aa10.98□□□□□ -0.65
VPS28-203ENST00000524521 NAA38Q9BRA0 125 aaKnown RBP10.98□□□□□ -0.65
VPS28-203ENST00000524521 IGKV4-1P06312 121 aa10.97□□□□□ -0.65
VPS28-203ENST00000524521 DSCR10P59022 87 aa10.97□□□□□ -0.65
VPS28-203ENST00000524521 RBM3P98179 157 aaKnown RBP10.97□□□□□ -0.65
VPS28-203ENST00000524521 LYRM7Q5U5X0 104 aa10.97□□□□□ -0.65
VPS28-203ENST00000524521 MT1HP80294 61 aa10.96□□□□□ -0.65
VPS28-203ENST00000524521 VPS25Q9BRG1 176 aa10.96□□□□□ -0.65
VPS28-203ENST00000524521 C20orf166-AS1Q96NR2 134 aa10.95□□□□□ -0.66
VPS28-203ENST00000524521 DEFB116Q30KQ4 102 aa10.94□□□□□ -0.66
VPS28-203ENST00000524521 COX6B2Q6YFQ2 88 aa10.94□□□□□ -0.66
VPS28-203ENST00000524521 DSCR8Q96T75 97 aa10.94□□□□□ -0.66
VPS28-203ENST00000524521 PCP4L1A6NKN8 68 aa10.93□□□□□ -0.66
VPS28-203ENST00000524521 A8MUU9 505 aa10.93□□□□□ -0.66
VPS28-203ENST00000524521 LINC00313P59037 77 aa10.92□□□□□ -0.66
VPS28-203ENST00000524521 ATXN8Q156A1 80 aa10.92□□□□□ -0.66
VPS28-203ENST00000524521 LINC00472Q9H8W2 130 aa10.91□□□□□ -0.66
VPS28-203ENST00000524521 C9orf118A6NHY6 69 aa10.9□□□□□ -0.66
VPS28-203ENST00000524521 TAX1BP3O14907 124 aa10.89□□□□□ -0.67
VPS28-203ENST00000524521 C9JAW5 83 aa10.88□□□□□ -0.67
VPS28-203ENST00000524521 COL5A1-AS1Q5SY13 56 aa10.88□□□□□ -0.67
VPS28-203ENST00000524521 TRBV20-1A0A075B6N2 111 aa10.87□□□□□ -0.67
VPS28-203ENST00000524521 A0A1W2PPM0 123 aa10.84□□□□□ -0.67
VPS28-203ENST00000524521 NOTCH2NLQ7Z3S9 236 aa10.84□□□□□ -0.67
VPS28-203ENST00000524521 IGHV6-1A0A0B4J1U7 121 aa10.83□□□□□ -0.68
VPS28-203ENST00000524521 M0R2T5 61 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms