RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 COX6B2Q6YFQ2 88 aa10.23□□□□□ -0.77
USP42-207ENST00000521713 NOTCH1P46531 2555 aa10.21□□□□□ -0.78
USP42-207ENST00000521713 LINC01558Q9Y6Z2 57 aa10.21□□□□□ -0.78
USP42-207ENST00000521713 PRUNE2Q8WUY3 3088 aa10.19□□□□□ -0.78
USP42-207ENST00000521713 A0A0G2JQZ4 141 aa10.19□□□□□ -0.78
USP42-207ENST00000521713 LINC01554Q52M75 96 aa10.18□□□□□ -0.78
USP42-207ENST00000521713 Q8N9P0 234 aaPredicted RBP10.18□□□□□ -0.78
USP42-207ENST00000521713 C9orf92A6NGG3 77 aa10.18□□□□□ -0.78
USP42-207ENST00000521713 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.18□□□□□ -0.78
USP42-207ENST00000521713 CDH23Q9H251 3354 aa10.17□□□□□ -0.78
USP42-207ENST00000521713 CYSTM1Q9H1C7 97 aa10.15□□□□□ -0.79
USP42-207ENST00000521713 CFAP54Q96N23 3096 aa10.14□□□□□ -0.79
USP42-207ENST00000521713 FAM229BQ4G0N7 80 aa10.13□□□□□ -0.79
USP42-207ENST00000521713 PRR26Q8N8Z3 221 aa10.13□□□□□ -0.79
USP42-207ENST00000521713 PLAC8Q9NZF1 115 aa10.12□□□□□ -0.79
USP42-207ENST00000521713 NBEAL1Q6ZS30 2694 aa10.1□□□□□ -0.79
USP42-207ENST00000521713 GCN1Q92616 2671 aaKnown RBP10.09□□□□□ -0.79
USP42-207ENST00000521713 UBR5O95071 2799 aaPredicted RBP10.08□□□□□ -0.8
USP42-207ENST00000521713 TRIOO75962 3097 aa10.08□□□□□ -0.8
USP42-207ENST00000521713 Q5VV11 94 aa10.08□□□□□ -0.8
USP42-207ENST00000521713 MAP1AP78559 2803 aaPredicted RBP10.05□□□□□ -0.8
USP42-207ENST00000521713 LCE6AA0A183 80 aa10.05□□□□□ -0.8
USP42-207ENST00000521713 XIRP2A4UGR9 3374 aa10.04□□□□□ -0.8
USP42-207ENST00000521713 H3BS24 57 aa10.01□□□□□ -0.81
USP42-207ENST00000521713 OXTP01178 125 aa10.01□□□□□ -0.81
USP42-207ENST00000521713 SPRR1AP35321 89 aa10□□□□□ -0.81
USP42-207ENST00000521713 KRTAP1-5Q9BYS1 174 aa10□□□□□ -0.81
USP42-207ENST00000521713 LUZP6Q538Z0 58 aa10□□□□□ -0.81
USP42-207ENST00000521713 MMP24-AS1A0A0U1RRL7 71 aa9.98□□□□□ -0.81
USP42-207ENST00000521713 HRES1P13985 223 aa9.98□□□□□ -0.81
USP42-207ENST00000521713 A0A1B0GU33 70 aa9.97□□□□□ -0.81
USP42-207ENST00000521713 FLG2Q5D862 2391 aaPredicted RBP9.97□□□□□ -0.81
USP42-207ENST00000521713 FLNCQ14315 2725 aa9.97□□□□□ -0.81
USP42-207ENST00000521713 Q8N1X5 172 aa9.95□□□□□ -0.82
USP42-207ENST00000521713 ASB16-AS1Q495Z4 193 aa9.95□□□□□ -0.82
USP42-207ENST00000521713 DNAH14Q0VDD8 3507 aa9.94□□□□□ -0.82
USP42-207ENST00000521713 KRTAP26-1Q6PEX3 210 aa9.93□□□□□ -0.82
USP42-207ENST00000521713 ITPR2Q14571 2701 aa9.92□□□□□ -0.82
USP42-207ENST00000521713 Q6ZSA8 131 aa9.92□□□□□ -0.82
USP42-207ENST00000521713 SZT2Q5T011 3432 aa9.91□□□□□ -0.82
USP42-207ENST00000521713 NSD1Q96L73 2696 aaPredicted RBP9.91□□□□□ -0.82
USP42-207ENST00000521713 SPRR1BP22528 89 aa9.91□□□□□ -0.82
USP42-207ENST00000521713 PRAC1Q96KF2 57 aa9.91□□□□□ -0.82
USP42-207ENST00000521713 DMAC1Q96GE9 116 aa9.9□□□□□ -0.82
USP42-207ENST00000521713 A0A0D9SG42 100 aa9.89□□□□□ -0.83
USP42-207ENST00000521713 VPS13AQ96RL7 3174 aa9.89□□□□□ -0.83
USP42-207ENST00000521713 ITPR1Q14643 2758 aa9.88□□□□□ -0.83
USP42-207ENST00000521713 Q8NDZ9 215 aa9.88□□□□□ -0.83
USP42-207ENST00000521713 SPINK7P58062 85 aa9.86□□□□□ -0.83
USP42-207ENST00000521713 LINC00472Q9H8W2 130 aa9.86□□□□□ -0.83
USP42-207ENST00000521713 KRTAP10-1P60331 282 aa9.84□□□□□ -0.83
USP42-207ENST00000521713 Q6ZR54 194 aa9.84□□□□□ -0.83
USP42-207ENST00000521713 CSAG1Q6PB30 78 aa9.83□□□□□ -0.84
USP42-207ENST00000521713 VCANP13611 3396 aa9.83□□□□□ -0.84
USP42-207ENST00000521713 KRTAP21-3Q3LHN1 58 aa9.82□□□□□ -0.84
USP42-207ENST00000521713 LAMA1P25391 3075 aa9.82□□□□□ -0.84
USP42-207ENST00000521713 Q5VSD8 79 aa9.82□□□□□ -0.84
USP42-207ENST00000521713 NBEAL2Q6ZNJ1 2754 aa9.82□□□□□ -0.84
USP42-207ENST00000521713 KRTAP10-2P60368 255 aa9.82□□□□□ -0.84
USP42-207ENST00000521713 FRYQ5TBA9 3013 aa9.78□□□□□ -0.84
USP42-207ENST00000521713 HIVEP1P15822 2718 aa9.76□□□□□ -0.85
USP42-207ENST00000521713 CELSR3Q9NYQ7 3312 aa9.76□□□□□ -0.85
USP42-207ENST00000521713 Q5W150 140 aa9.75□□□□□ -0.85
USP42-207ENST00000521713 ATMQ13315 3056 aa9.74□□□□□ -0.85
USP42-207ENST00000521713 A0A0A0MQY5 61 aa9.74□□□□□ -0.85
USP42-207ENST00000521713 STAB2Q8WWQ8 2551 aa9.74□□□□□ -0.85
USP42-207ENST00000521713 ZCCHC13Q8WW36 166 aaKnown RBP9.73□□□□□ -0.85
USP42-207ENST00000521713 FRYLO94915 3013 aa9.73□□□□□ -0.85
USP42-207ENST00000521713 TACC2O95359 2948 aa9.71□□□□□ -0.85
USP42-207ENST00000521713 COL12A1Q99715 3063 aa9.71□□□□□ -0.86
USP42-207ENST00000521713 LINC00483Q53H64 154 aa9.68□□□□□ -0.86
USP42-207ENST00000521713 KMT2BQ9UMN6 2715 aaPredicted RBP9.68□□□□□ -0.86
USP42-207ENST00000521713 SEC61BP60468 96 aaKnown RBP9.67□□□□□ -0.86
USP42-207ENST00000521713 SPEGQ15772 3267 aa9.66□□□□□ -0.86
USP42-207ENST00000521713 KRTAP29-1A8MX34 341 aaPredicted RBP9.64□□□□□ -0.87
USP42-207ENST00000521713 M0R2T5 61 aa9.63□□□□□ -0.87
USP42-207ENST00000521713 PANO1I0J062 215 aa9.63□□□□□ -0.87
USP42-207ENST00000521713 TENM4Q6N022 2769 aa9.61□□□□□ -0.87
USP42-207ENST00000521713 ROMO1P60602 79 aa9.61□□□□□ -0.87
USP42-207ENST00000521713 UTP20O75691 2785 aaKnown RBP9.61□□□□□ -0.87
USP42-207ENST00000521713 DMXL2Q8TDJ6 3036 aa9.6□□□□□ -0.87
USP42-207ENST00000521713 KRTAP4-16G5E9R7 235 aaPredicted RBP9.6□□□□□ -0.87
USP42-207ENST00000521713 RPL37P61927 97 aaKnown RBP9.59□□□□□ -0.87
USP42-207ENST00000521713 USP34Q70CQ2 3546 aa9.58□□□□□ -0.88
USP42-207ENST00000521713 Q6ZRN7 208 aaPredicted RBP9.58□□□□□ -0.88
USP42-207ENST00000521713 REV3LO60673 3130 aa9.58□□□□□ -0.88
USP42-207ENST00000521713 DMBT1Q9UGM3 2413 aaPredicted RBP9.58□□□□□ -0.88
USP42-207ENST00000521713 A6NN06 94 aa9.58□□□□□ -0.88
USP42-207ENST00000521713 APCP25054 2843 aa9.57□□□□□ -0.88
USP42-207ENST00000521713 SPATA8Q6RVD6 105 aa9.57□□□□□ -0.88
USP42-207ENST00000521713 EYSQ5T1H1 3165 aa9.56□□□□□ -0.88
USP42-207ENST00000521713 CAMK2N1Q7Z7J9 78 aa9.56□□□□□ -0.88
USP42-207ENST00000521713 TNRC18O15417 2968 aaPredicted RBP9.54□□□□□ -0.88
USP42-207ENST00000521713 NIPBLQ6KC79 2804 aaeCLIP9.53□□□□□ -0.88
USP42-207ENST00000521713 H1FX-AS1Q4G0G2 97 aa9.52□□□□□ -0.89
USP42-207ENST00000521713 S4R3F8 94 aa9.51□□□□□ -0.89
USP42-207ENST00000521713 SPTBN5Q9NRC6 3674 aaKnown RBP9.51□□□□□ -0.89
USP42-207ENST00000521713 ADGRG4Q8IZF6 3080 aa9.5□□□□□ -0.89
USP42-207ENST00000521713 NBEAQ8NFP9 2946 aa9.5□□□□□ -0.89
USP42-207ENST00000521713 COL6A3P12111 3177 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms