RNA–Protein interactions for RNA: ENST00000517490.5

CPNE3-203, Transcript of copine 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE3, Length 4,865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-203ENST00000517490 MRPL34Q9BQ48 92 aaKnown RBP4.22□□□□□ -1.73
CPNE3-203ENST00000517490 CDC42SE1Q9NRR8 79 aa4.22□□□□□ -1.73
CPNE3-203ENST00000517490 IGLV8-61A0A075B6I0 122 aa4.22□□□□□ -1.73
CPNE3-203ENST00000517490 GCN1Q92616 2671 aaKnown RBP4.22□□□□□ -1.73
CPNE3-203ENST00000517490 IGLV5-52A0A0A0MRZ9 124 aa4.21□□□□□ -1.73
CPNE3-203ENST00000517490 LINC01554Q52M75 96 aa4.21□□□□□ -1.74
CPNE3-203ENST00000517490 Q5VV11 94 aa4.21□□□□□ -1.74
CPNE3-203ENST00000517490 ITPR3Q14573 2671 aa4.21□□□□□ -1.74
CPNE3-203ENST00000517490 CNBPP62633 177 aaKnown RBP4.21□□□□□ -1.74
CPNE3-203ENST00000517490 KRTAP4-16G5E9R7 235 aaPredicted RBP4.2□□□□□ -1.74
CPNE3-203ENST00000517490 A0A1B0GU69 56 aa4.2□□□□□ -1.74
CPNE3-203ENST00000517490 CIRBP-AS1Q8TBR5 109 aa4.2□□□□□ -1.74
CPNE3-203ENST00000517490 A0A1B0GVX0 72 aa4.2□□□□□ -1.74
CPNE3-203ENST00000517490 DMXL1Q9Y485 3027 aa4.19□□□□□ -1.74
CPNE3-203ENST00000517490 TEX15Q9BXT5 2789 aa4.19□□□□□ -1.74
CPNE3-203ENST00000517490 CFAP47Q6ZTR5 3102 aa4.18□□□□□ -1.74
CPNE3-203ENST00000517490 ZFHX4Q86UP3 3567 aa4.17□□□□□ -1.74
CPNE3-203ENST00000517490 FASNP49327 2511 aaKnown RBP4.16□□□□□ -1.74
CPNE3-203ENST00000517490 NBEAL2Q6ZNJ1 2754 aa4.16□□□□□ -1.74
CPNE3-203ENST00000517490 MMP24-AS1A0A0U1RRL7 71 aa4.16□□□□□ -1.74
CPNE3-203ENST00000517490 SPRR1BP22528 89 aa4.16□□□□□ -1.74
CPNE3-203ENST00000517490 LINC00472Q9H8W2 130 aa4.16□□□□□ -1.74
CPNE3-203ENST00000517490 LINC01558Q9Y6Z2 57 aa4.16□□□□□ -1.74
CPNE3-203ENST00000517490 C9orf163Q8N9P6 203 aa4.16□□□□□ -1.74
CPNE3-203ENST00000517490 DMDP11532 3685 aa4.16□□□□□ -1.74
CPNE3-203ENST00000517490 ITPR1Q14643 2758 aa4.15□□□□□ -1.74
CPNE3-203ENST00000517490 KRTAP29-1A8MX34 341 aaPredicted RBP4.15□□□□□ -1.74
CPNE3-203ENST00000517490 KRTAP24-1Q3LI83 254 aa4.15□□□□□ -1.74
CPNE3-203ENST00000517490 FLNCQ14315 2725 aa4.15□□□□□ -1.75
CPNE3-203ENST00000517490 NBDYA0A0U1RRE5 68 aa4.15□□□□□ -1.75
CPNE3-203ENST00000517490 IGSF10Q6WRI0 2623 aa4.14□□□□□ -1.75
CPNE3-203ENST00000517490 LINC00313P59037 77 aa4.14□□□□□ -1.75
CPNE3-203ENST00000517490 SMG1Q96Q15 3661 aaKnown RBP4.14□□□□□ -1.75
CPNE3-203ENST00000517490 DCHS1Q96JQ0 3298 aa4.14□□□□□ -1.75
CPNE3-203ENST00000517490 SPINK1P00995 79 aa4.13□□□□□ -1.75
CPNE3-203ENST00000517490 DCHS2Q6V1P9 2916 aa4.13□□□□□ -1.75
CPNE3-203ENST00000517490 COL12A1Q99715 3063 aa4.13□□□□□ -1.75
CPNE3-203ENST00000517490 ATRQ13535 2644 aa4.12□□□□□ -1.75
CPNE3-203ENST00000517490 UNC79Q9P2D8 2635 aa4.12□□□□□ -1.75
CPNE3-203ENST00000517490 UQCR11O14957 56 aa4.12□□□□□ -1.75
CPNE3-203ENST00000517490 NDUFAF8A1L188 74 aa4.11□□□□□ -1.75
CPNE3-203ENST00000517490 IGKV2D-30A0A075B6S6 120 aa4.11□□□□□ -1.75
CPNE3-203ENST00000517490 KRTAP23-1A1A580 65 aa4.11□□□□□ -1.75
CPNE3-203ENST00000517490 IGKV2-30P06310 120 aa4.11□□□□□ -1.75
CPNE3-203ENST00000517490 C1orf134Q5TEV5 83 aa4.11□□□□□ -1.75
CPNE3-203ENST00000517490 ZNF861PO60384 105 aa4.1□□□□□ -1.75
CPNE3-203ENST00000517490 RTL8CO15255 209 aa4.1□□□□□ -1.75
CPNE3-203ENST00000517490 SETXQ7Z333 2677 aaKnown RBP4.1□□□□□ -1.75
CPNE3-203ENST00000517490 ZANQ9Y493 2812 aa4.1□□□□□ -1.75
CPNE3-203ENST00000517490 HRES1P13985 223 aa4.1□□□□□ -1.75
CPNE3-203ENST00000517490 K7EIL1 84 aa4.1□□□□□ -1.75
CPNE3-203ENST00000517490 UTP20O75691 2785 aaKnown RBP4.09□□□□□ -1.75
CPNE3-203ENST00000517490 ASPMQ8IZT6 3477 aa4.09□□□□□ -1.75
CPNE3-203ENST00000517490 MIR22HGQ0VDD5 57 aa4.09□□□□□ -1.75
CPNE3-203ENST00000517490 CFAP46Q8IYW2 2715 aa4.09□□□□□ -1.75
CPNE3-203ENST00000517490 SSBP3-AS1Q7Z2R9 100 aa4.08□□□□□ -1.76
CPNE3-203ENST00000517490 KRTAP7-1Q8IUC3 87 aa4.08□□□□□ -1.76
CPNE3-203ENST00000517490 CSMD1Q96PZ7 3565 aa4.08□□□□□ -1.76
CPNE3-203ENST00000517490 IGLV7-43P04211 117 aa4.07□□□□□ -1.76
CPNE3-203ENST00000517490 Q6ZR54 194 aa4.07□□□□□ -1.76
CPNE3-203ENST00000517490 APLNQ9ULZ1 77 aa4.07□□□□□ -1.76
CPNE3-203ENST00000517490 ASH1LQ9NR48 2969 aaKnown RBP4.07□□□□□ -1.76
CPNE3-203ENST00000517490 SPINK7P58062 85 aa4.07□□□□□ -1.76
CPNE3-203ENST00000517490 PSORS1C2Q9UIG4 136 aa4.07□□□□□ -1.76
CPNE3-203ENST00000517490 USP24Q9UPU5 2620 aa4.07□□□□□ -1.76
CPNE3-203ENST00000517490 SPINT4Q6UDR6 99 aa4.06□□□□□ -1.76
CPNE3-203ENST00000517490 ANAPC11Q9NYG5 84 aa4.06□□□□□ -1.76
CPNE3-203ENST00000517490 HECTD1Q9ULT8 2610 aa4.06□□□□□ -1.76
CPNE3-203ENST00000517490 LAMA5O15230 3695 aa4.06□□□□□ -1.76
CPNE3-203ENST00000517490 A0A087WTM6 91 aa4.05□□□□□ -1.76
CPNE3-203ENST00000517490 COX6B2Q6YFQ2 88 aa4.05□□□□□ -1.76
CPNE3-203ENST00000517490 SPACA4Q8TDM5 124 aa4.04□□□□□ -1.76
CPNE3-203ENST00000517490 MXRA5Q9NR99 2828 aa4.04□□□□□ -1.76
CPNE3-203ENST00000517490 A6NN06 94 aa4.04□□□□□ -1.76
CPNE3-203ENST00000517490 RELNP78509 3460 aa4.04□□□□□ -1.76
CPNE3-203ENST00000517490 KRTAP1-5Q9BYS1 174 aa4.03□□□□□ -1.76
CPNE3-203ENST00000517490 MUC3AQ02505 3323 aa4.03□□□□□ -1.77
CPNE3-203ENST00000517490 LINC00483Q53H64 154 aa4.02□□□□□ -1.77
CPNE3-203ENST00000517490 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.02□□□□□ -1.77
CPNE3-203ENST00000517490 A8MU10 97 aa4.01□□□□□ -1.77
CPNE3-203ENST00000517490 FBN2P35556 2912 aa4.01□□□□□ -1.77
CPNE3-203ENST00000517490 WWC2-AS2Q96NR7 200 aa4□□□□□ -1.77
CPNE3-203ENST00000517490 TEP1Q99973 2627 aaKnown RBP4□□□□□ -1.77
CPNE3-203ENST00000517490 Q96NJ1 140 aa4□□□□□ -1.77
CPNE3-203ENST00000517490 APCP25054 2843 aa3.99□□□□□ -1.77
CPNE3-203ENST00000517490 DMAC1Q96GE9 116 aa3.99□□□□□ -1.77
CPNE3-203ENST00000517490 ASB16-AS1Q495Z4 193 aa3.99□□□□□ -1.77
CPNE3-203ENST00000517490 Q5W150 140 aa3.99□□□□□ -1.77
CPNE3-203ENST00000517490 KRTAP11-1Q8IUC1 163 aa3.99□□□□□ -1.77
CPNE3-203ENST00000517490 NF1P21359 2839 aa3.98□□□□□ -1.77
CPNE3-203ENST00000517490 KRTAP3-3Q9BYR6 98 aa3.98□□□□□ -1.77
CPNE3-203ENST00000517490 KRTAP3-2Q9BYR7 98 aa3.98□□□□□ -1.77
CPNE3-203ENST00000517490 PLAC8Q9NZF1 115 aa3.98□□□□□ -1.77
CPNE3-203ENST00000517490 HELZ2Q9BYK8 2649 aaKnown RBP3.98□□□□□ -1.77
CPNE3-203ENST00000517490 TYMSOSQ8TAI1 123 aa3.97□□□□□ -1.77
CPNE3-203ENST00000517490 FLG2Q5D862 2391 aaPredicted RBP3.97□□□□□ -1.77
CPNE3-203ENST00000517490 UBR5O95071 2799 aaPredicted RBP3.97□□□□□ -1.77
CPNE3-203ENST00000517490 SPENQ96T58 3664 aaKnown RBP3.96□□□□□ -1.78
CPNE3-203ENST00000517490 SVEP1Q4LDE5 3571 aa3.96□□□□□ -1.78
CPNE3-203ENST00000517490 KRTAP13-1Q8IUC0 172 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms