RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 Q96NJ1 140 aa6.72□□□□□ -1.33
LIMCH1-205ENST00000503057 IGLV8-61A0A075B6I0 122 aa6.72□□□□□ -1.33
LIMCH1-205ENST00000503057 DMXL1Q9Y485 3027 aa6.71□□□□□ -1.34
LIMCH1-205ENST00000503057 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-205ENST00000503057 A8MUN3 132 aa6.7□□□□□ -1.34
LIMCH1-205ENST00000503057 SPRR1BP22528 89 aa6.7□□□□□ -1.34
LIMCH1-205ENST00000503057 CYSTM1Q9H1C7 97 aa6.69□□□□□ -1.34
LIMCH1-205ENST00000503057 CD164Q04900 197 aa6.68□□□□□ -1.34
LIMCH1-205ENST00000503057 KRTAP1-5Q9BYS1 174 aa6.68□□□□□ -1.34
LIMCH1-205ENST00000503057 LOC400499M0QZD8 3231 aa6.67□□□□□ -1.34
LIMCH1-205ENST00000503057 ZZEF1O43149 2961 aa6.66□□□□□ -1.34
LIMCH1-205ENST00000503057 LINC00336Q6ZUF6 198 aa6.66□□□□□ -1.34
LIMCH1-205ENST00000503057 FLNBO75369 2602 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-205ENST00000503057 KRTAP4-16G5E9R7 235 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-205ENST00000503057 LINC00304Q8N9R0 145 aa6.66□□□□□ -1.34
LIMCH1-205ENST00000503057 PLAC8Q9NZF1 115 aa6.66□□□□□ -1.34
LIMCH1-205ENST00000503057 HRNRQ86YZ3 2850 aaPredicted RBP6.66□□□□□ -1.34
LIMCH1-205ENST00000503057 TNP2Q05952 138 aa6.66□□□□□ -1.34
LIMCH1-205ENST00000503057 MAP1AP78559 2803 aaPredicted RBP6.65□□□□□ -1.35
LIMCH1-205ENST00000503057 UNC79Q9P2D8 2635 aa6.65□□□□□ -1.35
LIMCH1-205ENST00000503057 GCN1Q92616 2671 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-205ENST00000503057 FLNCQ14315 2725 aa6.63□□□□□ -1.35
LIMCH1-205ENST00000503057 SETXQ7Z333 2677 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-205ENST00000503057 MMP24-AS1A0A0U1RRL7 71 aa6.62□□□□□ -1.35
LIMCH1-205ENST00000503057 Q1T7F1 81 aa6.62□□□□□ -1.35
LIMCH1-205ENST00000503057 ATP11AUNQ6ZP68 121 aa6.62□□□□□ -1.35
LIMCH1-205ENST00000503057 WDFY3Q8IZQ1 3526 aa6.61□□□□□ -1.35
LIMCH1-205ENST00000503057 LINC00472Q9H8W2 130 aa6.61□□□□□ -1.35
LIMCH1-205ENST00000503057 COL12A1Q99715 3063 aa6.61□□□□□ -1.35
LIMCH1-205ENST00000503057 MAST4O15021 2626 aa6.6□□□□□ -1.35
LIMCH1-205ENST00000503057 UTP20O75691 2785 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-205ENST00000503057 TACC2O95359 2948 aa6.6□□□□□ -1.35
LIMCH1-205ENST00000503057 IGLV7-46A0A075B6I9 117 aa6.59□□□□□ -1.36
LIMCH1-205ENST00000503057 UQCR11O14957 56 aa6.58□□□□□ -1.36
LIMCH1-205ENST00000503057 Q5XG85 94 aa6.58□□□□□ -1.36
LIMCH1-205ENST00000503057 ITPR1Q14643 2758 aa6.58□□□□□ -1.36
LIMCH1-205ENST00000503057 FAM229BQ4G0N7 80 aa6.57□□□□□ -1.36
LIMCH1-205ENST00000503057 TEP1Q99973 2627 aaKnown RBP6.55□□□□□ -1.36
LIMCH1-205ENST00000503057 LINC00483Q53H64 154 aa6.54□□□□□ -1.36
LIMCH1-205ENST00000503057 MGAM2Q2M2H8 2515 aa6.54□□□□□ -1.36
LIMCH1-205ENST00000503057 SMR3BP02814 79 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-205ENST00000503057 FP248Q71RG6 208 aaPredicted RBP6.53□□□□□ -1.36
LIMCH1-205ENST00000503057 NBEAL2Q6ZNJ1 2754 aa6.52□□□□□ -1.37
LIMCH1-205ENST00000503057 C9orf92A6NGG3 77 aa6.52□□□□□ -1.37
LIMCH1-205ENST00000503057 MIR22HGQ0VDD5 57 aa6.51□□□□□ -1.37
LIMCH1-205ENST00000503057 OXTP01178 125 aa6.5□□□□□ -1.37
LIMCH1-205ENST00000503057 DMDP11532 3685 aa6.49□□□□□ -1.37
LIMCH1-205ENST00000503057 KRTAP7-1Q8IUC3 87 aa6.49□□□□□ -1.37
LIMCH1-205ENST00000503057 CDC42SE1Q9NRR8 79 aa6.48□□□□□ -1.37
LIMCH1-205ENST00000503057 APCP25054 2843 aa6.48□□□□□ -1.37
LIMCH1-205ENST00000503057 PANO1I0J062 215 aa6.47□□□□□ -1.37
LIMCH1-205ENST00000503057 UBR5O95071 2799 aaPredicted RBP6.47□□□□□ -1.37
LIMCH1-205ENST00000503057 KMT2BQ9UMN6 2715 aaPredicted RBP6.46□□□□□ -1.37
LIMCH1-205ENST00000503057 KRTAP29-1A8MX34 341 aaPredicted RBP6.46□□□□□ -1.38
LIMCH1-205ENST00000503057 HRES1P13985 223 aa6.46□□□□□ -1.38
LIMCH1-205ENST00000503057 Q75L30 129 aa6.46□□□□□ -1.38
LIMCH1-205ENST00000503057 Q6ZR54 194 aa6.45□□□□□ -1.38
LIMCH1-205ENST00000503057 KTN1-AS1Q86SY8 53 aa6.45□□□□□ -1.38
LIMCH1-205ENST00000503057 Q8N9P0 234 aaPredicted RBP6.44□□□□□ -1.38
LIMCH1-205ENST00000503057 Q6ZRN7 208 aaPredicted RBP6.43□□□□□ -1.38
LIMCH1-205ENST00000503057 PRR26Q8N8Z3 221 aa6.43□□□□□ -1.38
LIMCH1-205ENST00000503057 ITPR2Q14571 2701 aa6.43□□□□□ -1.38
LIMCH1-205ENST00000503057 CFAP47Q6ZTR5 3102 aa6.43□□□□□ -1.38
LIMCH1-205ENST00000503057 LINC01558Q9Y6Z2 57 aa6.43□□□□□ -1.38
LIMCH1-205ENST00000503057 ZCCHC13Q8WW36 166 aaKnown RBP6.42□□□□□ -1.38
LIMCH1-205ENST00000503057 KRTAP11-1Q8IUC1 163 aa6.42□□□□□ -1.38
LIMCH1-205ENST00000503057 Q8N1X5 172 aa6.41□□□□□ -1.38
LIMCH1-205ENST00000503057 Q5W150 140 aa6.4□□□□□ -1.38
LIMCH1-205ENST00000503057 ZANQ9Y493 2812 aa6.4□□□□□ -1.39
LIMCH1-205ENST00000503057 ZFHX4Q86UP3 3567 aa6.4□□□□□ -1.39
LIMCH1-205ENST00000503057 KRTAP10-2P60368 255 aa6.39□□□□□ -1.39
LIMCH1-205ENST00000503057 LCE6AA0A183 80 aa6.39□□□□□ -1.39
LIMCH1-205ENST00000503057 KRTAP10-1P60331 282 aa6.38□□□□□ -1.39
LIMCH1-205ENST00000503057 COL6A5A8TX70 2615 aa6.37□□□□□ -1.39
LIMCH1-205ENST00000503057 ASPMQ8IZT6 3477 aa6.37□□□□□ -1.39
LIMCH1-205ENST00000503057 Q5VV11 94 aa6.37□□□□□ -1.39
LIMCH1-205ENST00000503057 KRTAP13-1Q8IUC0 172 aa6.36□□□□□ -1.39
LIMCH1-205ENST00000503057 LCA10Q71F78 164 aa6.36□□□□□ -1.39
LIMCH1-205ENST00000503057 LAMA5O15230 3695 aa6.35□□□□□ -1.39
LIMCH1-205ENST00000503057 RELNP78509 3460 aa6.35□□□□□ -1.39
LIMCH1-205ENST00000503057 NOTCH1P46531 2555 aa6.35□□□□□ -1.39
LIMCH1-205ENST00000503057 STAB1Q9NY15 2570 aa6.33□□□□□ -1.4
LIMCH1-205ENST00000503057 NSD1Q96L73 2696 aaPredicted RBP6.32□□□□□ -1.4
LIMCH1-205ENST00000503057 MUC3AQ02505 3323 aa6.32□□□□□ -1.4
LIMCH1-205ENST00000503057 ASB16-AS1Q495Z4 193 aa6.32□□□□□ -1.4
LIMCH1-205ENST00000503057 HIVEP1P15822 2718 aa6.31□□□□□ -1.4
LIMCH1-205ENST00000503057 DCHS2Q6V1P9 2916 aa6.3□□□□□ -1.4
LIMCH1-205ENST00000503057 DMAC1Q96GE9 116 aa6.3□□□□□ -1.4
LIMCH1-205ENST00000503057 RBM12B-AS1Q9P1G2 102 aa6.3□□□□□ -1.4
LIMCH1-205ENST00000503057 J3QL48 77 aa6.29□□□□□ -1.4
LIMCH1-205ENST00000503057 CRYBG3Q68DQ2 2970 aa6.28□□□□□ -1.4
LIMCH1-205ENST00000503057 A0A087X002 238 aa6.28□□□□□ -1.4
LIMCH1-205ENST00000503057 SMG1Q96Q15 3661 aaKnown RBP6.28□□□□□ -1.4
LIMCH1-205ENST00000503057 CELSR2Q9HCU4 2923 aa6.27□□□□□ -1.41
LIMCH1-205ENST00000503057 FBN2P35556 2912 aa6.27□□□□□ -1.41
LIMCH1-205ENST00000503057 CRIPTQ9P021 101 aa6.27□□□□□ -1.41
LIMCH1-205ENST00000503057 SPINT4Q6UDR6 99 aa6.27□□□□□ -1.41
LIMCH1-205ENST00000503057 NOTCH2NLQ7Z3S9 236 aa6.26□□□□□ -1.41
LIMCH1-205ENST00000503057 A0A1B0GU33 70 aa6.24□□□□□ -1.41
LIMCH1-205ENST00000503057 SPINK7P58062 85 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms