RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 NBASA2RRP1 2371 aa-0.42□□□□□ -2.48
SMC4-225ENST00000497203 CRYBG3Q68DQ2 2970 aa-0.42□□□□□ -2.48
SMC4-225ENST00000497203 DNAH7Q8WXX0 4024 aa-0.42□□□□□ -2.48
SMC4-225ENST00000497203 DNAH17Q9UFH2 4485 aa-0.43□□□□□ -2.48
SMC4-225ENST00000497203 C9orf92A6NGG3 77 aa-0.43□□□□□ -2.48
SMC4-225ENST00000497203 HMGN2P05204 90 aaKnown RBP-0.43□□□□□ -2.48
SMC4-225ENST00000497203 RBP2P50120 134 aa-0.43□□□□□ -2.48
SMC4-225ENST00000497203 KRTAP19-6Q3LI70 58 aa-0.43□□□□□ -2.48
SMC4-225ENST00000497203 ACBD7Q8N6N7 88 aa-0.43□□□□□ -2.48
SMC4-225ENST00000497203 ALKQ9UM73 1620 aa-0.43□□□□□ -2.48
SMC4-225ENST00000497203 RELNP78509 3460 aa-0.43□□□□□ -2.48
SMC4-225ENST00000497203 LRRK2Q5S007 2527 aa-0.43□□□□□ -2.48
SMC4-225ENST00000497203 UBR3Q6ZT12 1888 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 SPENQ96T58 3664 aaKnown RBP-0.44□□□□□ -2.48
SMC4-225ENST00000497203 TRRAPQ9Y4A5 3859 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 CENPEQ02224 2701 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 ATP6V1G2-DDX39BF2Z307 99 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 NDUFA3O95167 84 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 GYPAP02724 150 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 WFDC9Q8NEX5 89 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 SPRR2FQ96RM1 72 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 FAM186AA6NE01 2351 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 CSMD2Q7Z408 3487 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 FREM2Q5SZK8 3169 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 PDE4DIPQ5VU43 2346 aa-0.44□□□□□ -2.48
SMC4-225ENST00000497203 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.44□□□□□ -2.48
SMC4-225ENST00000497203 MGAQ8IWI9 3026 aa-0.45□□□□□ -2.48
SMC4-225ENST00000497203 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.45□□□□□ -2.48
SMC4-225ENST00000497203 ATP7BP35670 1465 aa-0.45□□□□□ -2.48
SMC4-225ENST00000497203 NDUFB1O75438 58 aa-0.45□□□□□ -2.48
SMC4-225ENST00000497203 C3orf79P0CE67 100 aa-0.45□□□□□ -2.48
SMC4-225ENST00000497203 PRO3102Q9H379 93 aa-0.45□□□□□ -2.48
SMC4-225ENST00000497203 DNAH9Q9NYC9 4486 aa-0.45□□□□□ -2.48
SMC4-225ENST00000497203 PKD1L2Q7Z442 2459 aa-0.45□□□□□ -2.48
SMC4-225ENST00000497203 EP400Q96L91 3159 aa-0.45□□□□□ -2.48
SMC4-225ENST00000497203 MYO3AQ8NEV4 1616 aa-0.46□□□□□ -2.48
SMC4-225ENST00000497203 FRYQ5TBA9 3013 aa-0.46□□□□□ -2.48
SMC4-225ENST00000497203 DNAH11Q96DT5 4516 aa-0.46□□□□□ -2.48
SMC4-225ENST00000497203 C4AP0C0L4 1744 aa-0.46□□□□□ -2.48
SMC4-225ENST00000497203 C4BP0C0L5 1744 aa-0.46□□□□□ -2.48
SMC4-225ENST00000497203 MYO9AB2RTY4 2548 aa-0.46□□□□□ -2.48
SMC4-225ENST00000497203 M0R143 59 aa-0.46□□□□□ -2.48
SMC4-225ENST00000497203 CSMD1Q96PZ7 3565 aa-0.46□□□□□ -2.48
SMC4-225ENST00000497203 PLIN4Q96Q06 1357 aa-0.46□□□□□ -2.48
SMC4-225ENST00000497203 C5orf42Q9H799 3197 aa-0.47□□□□□ -2.48
SMC4-225ENST00000497203 MT1AP04731 61 aa-0.47□□□□□ -2.48
SMC4-225ENST00000497203 LINC00158P58513 81 aa-0.47□□□□□ -2.48
SMC4-225ENST00000497203 NCMAPQ5T1S8 102 aa-0.47□□□□□ -2.48
SMC4-225ENST00000497203 DNAH10Q8IVF4 4471 aa-0.47□□□□□ -2.48
SMC4-225ENST00000497203 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.47□□□□□ -2.48
SMC4-225ENST00000497203 TIAM2Q8IVF5 1701 aa-0.47□□□□□ -2.49
SMC4-225ENST00000497203 LOC400499M0QZD8 3231 aa-0.47□□□□□ -2.49
SMC4-225ENST00000497203 ACACBO00763 2458 aa-0.48□□□□□ -2.49
SMC4-225ENST00000497203 SUPT6HQ7KZ85 1726 aaKnown RBP-0.48□□□□□ -2.49
SMC4-225ENST00000497203 CFAP54Q96N23 3096 aa-0.48□□□□□ -2.49
SMC4-225ENST00000497203 SPEGQ15772 3267 aa-0.48□□□□□ -2.49
SMC4-225ENST00000497203 CEP162Q5TB80 1403 aa-0.48□□□□□ -2.49
SMC4-225ENST00000497203 FRYLO94915 3013 aa-0.48□□□□□ -2.49
SMC4-225ENST00000497203 MAGI3Q5TCQ9 1506 aa-0.48□□□□□ -2.49
SMC4-225ENST00000497203 DMDP11532 3685 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 SPTBN5Q9NRC6 3674 aaKnown RBP-0.49□□□□□ -2.49
SMC4-225ENST00000497203 WDFY4Q6ZS81 3184 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 ACACAQ13085 2346 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 TLN2Q9Y4G6 2542 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 TRAV21A0A0B4J279 112 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 MYMXA0A1B0GTQ4 84 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 S100A8P05109 93 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 Q9H521 79 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 DNAH8Q96JB1 4490 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 PLXNC1O60486 1568 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 NWD1Q149M9 1564 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 USP32Q8NFA0 1604 aa-0.49□□□□□ -2.49
SMC4-225ENST00000497203 TLN1Q9Y490 2541 aaKnown RBP-0.49□□□□□ -2.49
SMC4-225ENST00000497203 CEP350Q5VT06 3117 aa-0.5□□□□□ -2.49
SMC4-225ENST00000497203 VCANP13611 3396 aa-0.5□□□□□ -2.49
SMC4-225ENST00000497203 ACYP1P07311 99 aa-0.5□□□□□ -2.49
SMC4-225ENST00000497203 IFI27P40305 119 aaPredicted RBP-0.5□□□□□ -2.49
SMC4-225ENST00000497203 URB2Q14146 1524 aaKnown RBP-0.5□□□□□ -2.49
SMC4-225ENST00000497203 NESP48681 1621 aa-0.5□□□□□ -2.49
SMC4-225ENST00000497203 CEBPZOSA8MTT3 80 aa-0.51□□□□□ -2.49
SMC4-225ENST00000497203 DEPDC5O75140 1603 aa-0.51□□□□□ -2.49
SMC4-225ENST00000497203 PKIAP61925 76 aa-0.51□□□□□ -2.49
SMC4-225ENST00000497203 SNRPFP62306 86 aaKnown RBP-0.51□□□□□ -2.49
SMC4-225ENST00000497203 PRLHP81277 87 aa-0.51□□□□□ -2.49
SMC4-225ENST00000497203 ABCC10Q5T3U5 1492 aa-0.51□□□□□ -2.49
SMC4-225ENST00000497203 VPS8Q8N3P4 1428 aa-0.51□□□□□ -2.49
SMC4-225ENST00000497203 MYH4Q9Y623 1939 aa-0.51□□□□□ -2.49
SMC4-225ENST00000497203 S4R3F8 94 aa-0.51□□□□□ -2.49
SMC4-225ENST00000497203 POLR1AO95602 1720 aaPredicted RBP-0.52□□□□□ -2.49
SMC4-225ENST00000497203 RGPD1P0DJD0 1748 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 ANKRD26Q9UPS8 1709 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 NEXMIFQ5QGS0 1516 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 CCNB3Q8WWL7 1395 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 K7EP34 96 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 IFI6P09912 130 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 DEFA5Q01523 94 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 DEFB110Q30KQ9 67 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 C20orf78Q9BR46 151 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 UNC80Q8N2C7 3258 aa-0.52□□□□□ -2.49
SMC4-225ENST00000497203 LTN1O94822 1766 aa-0.52□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms