RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 KRTAP10-11P60412 298 aa4.56□□□□□ -1.68
SYNE1-228ENST00000490135 FRYLO94915 3013 aa4.56□□□□□ -1.68
SYNE1-228ENST00000490135 C19orf73Q9NVV2 129 aa4.56□□□□□ -1.68
SYNE1-228ENST00000490135 Q8NDZ9 215 aa4.55□□□□□ -1.68
SYNE1-228ENST00000490135 NDUFAF8A1L188 74 aa4.54□□□□□ -1.68
SYNE1-228ENST00000490135 SEC61BP60468 96 aaKnown RBP4.53□□□□□ -1.68
SYNE1-228ENST00000490135 ZNF462Q96JM2 2506 aa4.53□□□□□ -1.68
SYNE1-228ENST00000490135 FN1P02751 2386 aaKnown RBP4.53□□□□□ -1.68
SYNE1-228ENST00000490135 SPEGQ15772 3267 aa4.53□□□□□ -1.68
SYNE1-228ENST00000490135 MMP24-AS1A0A0U1RRL7 71 aa4.51□□□□□ -1.69
SYNE1-228ENST00000490135 WDR87Q6ZQQ6 2873 aa4.51□□□□□ -1.69
SYNE1-228ENST00000490135 DCHS1Q96JQ0 3298 aa4.5□□□□□ -1.69
SYNE1-228ENST00000490135 LRRK2Q5S007 2527 aa4.49□□□□□ -1.69
SYNE1-228ENST00000490135 M0QZ58 72 aa4.49□□□□□ -1.69
SYNE1-228ENST00000490135 CASC10Q5T4H9 136 aa4.48□□□□□ -1.69
SYNE1-228ENST00000490135 RPL37P61927 97 aaKnown RBP4.48□□□□□ -1.69
SYNE1-228ENST00000490135 GIG44P09565 113 aaPredicted RBP4.47□□□□□ -1.69
SYNE1-228ENST00000490135 TNP2Q05952 138 aa4.47□□□□□ -1.69
SYNE1-228ENST00000490135 ASPMQ8IZT6 3477 aa4.47□□□□□ -1.69
SYNE1-228ENST00000490135 JMJD1CQ15652 2540 aa4.47□□□□□ -1.69
SYNE1-228ENST00000490135 KRTAP29-1A8MX34 341 aaPredicted RBP4.45□□□□□ -1.7
SYNE1-228ENST00000490135 TLN1Q9Y490 2541 aaKnown RBP4.44□□□□□ -1.7
SYNE1-228ENST00000490135 LAMA1P25391 3075 aa4.44□□□□□ -1.7
SYNE1-228ENST00000490135 A8MUU9 505 aa4.44□□□□□ -1.7
SYNE1-228ENST00000490135 Q5VSD8 79 aa4.43□□□□□ -1.7
SYNE1-228ENST00000490135 Q5W150 140 aa4.41□□□□□ -1.7
SYNE1-228ENST00000490135 CFAP54Q96N23 3096 aa4.41□□□□□ -1.7
SYNE1-228ENST00000490135 TLN2Q9Y4G6 2542 aa4.41□□□□□ -1.7
SYNE1-228ENST00000490135 ACANP16112 2415 aa4.41□□□□□ -1.7
SYNE1-228ENST00000490135 C20orf166-AS1Q96NR2 134 aa4.4□□□□□ -1.7
SYNE1-228ENST00000490135 LINC00472Q9H8W2 130 aa4.4□□□□□ -1.71
SYNE1-228ENST00000490135 ZFHX4Q86UP3 3567 aa4.4□□□□□ -1.71
SYNE1-228ENST00000490135 PLAC8Q9NZF1 115 aa4.39□□□□□ -1.71
SYNE1-228ENST00000490135 DMXL1Q9Y485 3027 aa4.39□□□□□ -1.71
SYNE1-228ENST00000490135 KRTAP10-3P60369 221 aa4.39□□□□□ -1.71
SYNE1-228ENST00000490135 ABCA12Q86UK0 2595 aa4.38□□□□□ -1.71
SYNE1-228ENST00000490135 NCOR2Q9Y618 2525 aa4.37□□□□□ -1.71
SYNE1-228ENST00000490135 ZFYVE26Q68DK2 2539 aa4.37□□□□□ -1.71
SYNE1-228ENST00000490135 KRTAP26-1Q6PEX3 210 aa4.36□□□□□ -1.71
SYNE1-228ENST00000490135 LAMA5O15230 3695 aa4.35□□□□□ -1.71
SYNE1-228ENST00000490135 IGF2RP11717 2491 aa4.34□□□□□ -1.71
SYNE1-228ENST00000490135 NOTCH2NLQ7Z3S9 236 aa4.33□□□□□ -1.72
SYNE1-228ENST00000490135 LOC400499M0QZD8 3231 aa4.33□□□□□ -1.72
SYNE1-228ENST00000490135 CFAP47Q6ZTR5 3102 aa4.33□□□□□ -1.72
SYNE1-228ENST00000490135 SPRR1AP35321 89 aa4.32□□□□□ -1.72
SYNE1-228ENST00000490135 CELSR3Q9NYQ7 3312 aa4.32□□□□□ -1.72
SYNE1-228ENST00000490135 PKD1L2Q7Z442 2459 aa4.32□□□□□ -1.72
SYNE1-228ENST00000490135 PIEZO2Q9H5I5 2752 aa4.32□□□□□ -1.72
SYNE1-228ENST00000490135 PANO1I0J062 215 aa4.3□□□□□ -1.72
SYNE1-228ENST00000490135 PIEZO1Q92508 2521 aa4.3□□□□□ -1.72
SYNE1-228ENST00000490135 FREM2Q5SZK8 3169 aa4.28□□□□□ -1.72
SYNE1-228ENST00000490135 SPENQ96T58 3664 aaKnown RBP4.27□□□□□ -1.73
SYNE1-228ENST00000490135 CR1P17927 2039 aa4.27□□□□□ -1.73
SYNE1-228ENST00000490135 KRTAP11-1Q8IUC1 163 aa4.26□□□□□ -1.73
SYNE1-228ENST00000490135 SPRR1BP22528 89 aa4.26□□□□□ -1.73
SYNE1-228ENST00000490135 SMG1Q96Q15 3661 aaKnown RBP4.25□□□□□ -1.73
SYNE1-228ENST00000490135 ZZEF1O43149 2961 aa4.24□□□□□ -1.73
SYNE1-228ENST00000490135 USP9XQ93008 2570 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-228ENST00000490135 KRTAP4-16G5E9R7 235 aaPredicted RBP4.23□□□□□ -1.73
SYNE1-228ENST00000490135 FLG2Q5D862 2391 aaPredicted RBP4.22□□□□□ -1.73
SYNE1-228ENST00000490135 PRRC2CQ9Y520 2896 aaKnown RBP4.21□□□□□ -1.74
SYNE1-228ENST00000490135 FRYQ5TBA9 3013 aa4.21□□□□□ -1.74
SYNE1-228ENST00000490135 TNP1P09430 55 aa4.21□□□□□ -1.74
SYNE1-228ENST00000490135 P0C880 135 aa4.21□□□□□ -1.74
SYNE1-228ENST00000490135 C10orf95Q9H7T3 257 aa4.2□□□□□ -1.74
SYNE1-228ENST00000490135 NBEAQ8NFP9 2946 aa4.19□□□□□ -1.74
SYNE1-228ENST00000490135 KRTAP10-1P60331 282 aa4.19□□□□□ -1.74
SYNE1-228ENST00000490135 SETD2Q9BYW2 2564 aaPredicted RBP4.18□□□□□ -1.74
SYNE1-228ENST00000490135 CHD8Q9HCK8 2581 aa4.17□□□□□ -1.74
SYNE1-228ENST00000490135 BSNQ9UPA5 3926 aa4.15□□□□□ -1.74
SYNE1-228ENST00000490135 DMXL2Q8TDJ6 3036 aa4.15□□□□□ -1.75
SYNE1-228ENST00000490135 KRTAP1-1Q07627 177 aa4.14□□□□□ -1.75
SYNE1-228ENST00000490135 KRTAP1-3Q8IUG1 177 aa4.14□□□□□ -1.75
SYNE1-228ENST00000490135 MTORP42345 2549 aa4.14□□□□□ -1.75
SYNE1-228ENST00000490135 H0YAA0 97 aa4.14□□□□□ -1.75
SYNE1-228ENST00000490135 KRTAP10-2P60368 255 aa4.14□□□□□ -1.75
SYNE1-228ENST00000490135 SPTBN4Q9H254 2564 aa4.12□□□□□ -1.75
SYNE1-228ENST00000490135 KRTAP21-3Q3LHN1 58 aa4.12□□□□□ -1.75
SYNE1-228ENST00000490135 ZNF292O60281 2723 aa4.12□□□□□ -1.75
SYNE1-228ENST00000490135 ZFHX3Q15911 3703 aa4.11□□□□□ -1.75
SYNE1-228ENST00000490135 BOD1L1Q8NFC6 3051 aa4.11□□□□□ -1.75
SYNE1-228ENST00000490135 ANKRD17O75179 2603 aaKnown RBP4.1□□□□□ -1.75
SYNE1-228ENST00000490135 ATMQ13315 3056 aa4.1□□□□□ -1.75
SYNE1-228ENST00000490135 USP9YO00507 2555 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-228ENST00000490135 DSPP15924 2871 aaKnown RBP4.09□□□□□ -1.75
SYNE1-228ENST00000490135 MGAQ8IWI9 3026 aa4.09□□□□□ -1.76
SYNE1-228ENST00000490135 KRTAP1-5Q9BYS1 174 aa4.08□□□□□ -1.76
SYNE1-228ENST00000490135 RPS29P62273 56 aaKnown RBP4.07□□□□□ -1.76
SYNE1-228ENST00000490135 RELNP78509 3460 aa4.07□□□□□ -1.76
SYNE1-228ENST00000490135 COL12A1Q99715 3063 aa4.07□□□□□ -1.76
SYNE1-228ENST00000490135 PP632Q6XCG6 107 aa4.06□□□□□ -1.76
SYNE1-228ENST00000490135 POLQO75417 2590 aa4.05□□□□□ -1.76
SYNE1-228ENST00000490135 KRTAP10-8P60410 259 aa4.04□□□□□ -1.76
SYNE1-228ENST00000490135 AKAP13Q12802 2813 aa4.04□□□□□ -1.76
SYNE1-228ENST00000490135 CEP295Q9C0D2 2601 aa4.03□□□□□ -1.76
SYNE1-228ENST00000490135 KRTAP7-1Q8IUC3 87 aa4.03□□□□□ -1.76
SYNE1-228ENST00000490135 ANKRD11Q6UB99 2663 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-228ENST00000490135 ITPR1Q14643 2758 aa4.02□□□□□ -1.77
SYNE1-228ENST00000490135 MGAM2Q2M2H8 2515 aa4.01□□□□□ -1.77
SYNE1-228ENST00000490135 KRTAP15-1Q3LI76 137 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms