RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.72□□□□□ -1.01
CCDC28B-205ENST00000483009 A0A0G2JQZ4 141 aa8.71□□□□□ -1.02
CCDC28B-205ENST00000483009 A0A0U1RQV1 116 aa8.71□□□□□ -1.02
CCDC28B-205ENST00000483009 Q5XG85 94 aa8.71□□□□□ -1.02
CCDC28B-205ENST00000483009 CEND1Q8N111 149 aa8.7□□□□□ -1.02
CCDC28B-205ENST00000483009 TMA7Q9Y2S6 64 aaKnown RBP8.69□□□□□ -1.02
CCDC28B-205ENST00000483009 TMEM238LA0A1B0GVL6 79 aa8.68□□□□□ -1.02
CCDC28B-205ENST00000483009 A6NJY4 79 aa8.68□□□□□ -1.02
CCDC28B-205ENST00000483009 ASB16-AS1Q495Z4 193 aa8.68□□□□□ -1.02
CCDC28B-205ENST00000483009 PPDPFLQ8WWR9 84 aa8.67□□□□□ -1.02
CCDC28B-205ENST00000483009 IGLV8-61A0A075B6I0 122 aa8.66□□□□□ -1.02
CCDC28B-205ENST00000483009 H0YGX0 51 aa8.66□□□□□ -1.02
CCDC28B-205ENST00000483009 FXYD2P54710 66 aa8.66□□□□□ -1.02
CCDC28B-205ENST00000483009 Q6JHZ5 121 aa8.66□□□□□ -1.02
CCDC28B-205ENST00000483009 SEC61BP60468 96 aaKnown RBP8.65□□□□□ -1.02
CCDC28B-205ENST00000483009 XP32Q5T750 250 aa8.65□□□□□ -1.02
CCDC28B-205ENST00000483009 PRO1854Q9UHT4 67 aa8.65□□□□□ -1.02
CCDC28B-205ENST00000483009 SNCGO76070 127 aa8.64□□□□□ -1.03
CCDC28B-205ENST00000483009 OCIAD2Q56VL3 154 aa8.64□□□□□ -1.03
CCDC28B-205ENST00000483009 HSD52Q0P140 79 aa8.63□□□□□ -1.03
CCDC28B-205ENST00000483009 C1orf195Q5TG92 126 aa8.63□□□□□ -1.03
CCDC28B-205ENST00000483009 CLEC2BQ92478 149 aa8.63□□□□□ -1.03
CCDC28B-205ENST00000483009 SNHG12Q9BXW3 62 aa8.63□□□□□ -1.03
CCDC28B-205ENST00000483009 TCL1BO95988 128 aa8.62□□□□□ -1.03
CCDC28B-205ENST00000483009 IGFL1Q6UW32 110 aa8.62□□□□□ -1.03
CCDC28B-205ENST00000483009 FAM218AQ96MZ4 157 aa8.62□□□□□ -1.03
CCDC28B-205ENST00000483009 FAT4Q6V0I7 4981 aa8.61□□□□□ -1.03
CCDC28B-205ENST00000483009 A0A1B0GX51 115 aa8.59□□□□□ -1.03
CCDC28B-205ENST00000483009 C9orf92A6NGG3 77 aa8.59□□□□□ -1.03
CCDC28B-205ENST00000483009 UQCR10Q9UDW1 63 aa8.59□□□□□ -1.03
CCDC28B-205ENST00000483009 TRBV7-7A0A0K0K1E9 115 aa8.58□□□□□ -1.04
CCDC28B-205ENST00000483009 H3BUT2 72 aa8.58□□□□□ -1.04
CCDC28B-205ENST00000483009 TRIAP1O43715 76 aa8.57□□□□□ -1.04
CCDC28B-205ENST00000483009 K7ERJ3 54 aa8.55□□□□□ -1.04
CCDC28B-205ENST00000483009 KRTAP4-1Q9BYQ7 146 aa8.55□□□□□ -1.04
CCDC28B-205ENST00000483009 GHRHP01286 108 aa8.54□□□□□ -1.04
CCDC28B-205ENST00000483009 NDUFV3P56181 108 aaKnown RBP8.54□□□□□ -1.04
CCDC28B-205ENST00000483009 FABP2P12104 132 aa8.51□□□□□ -1.05
CCDC28B-205ENST00000483009 PSMB2P49721 201 aa8.51□□□□□ -1.05
CCDC28B-205ENST00000483009 LCE2AQ5TA79 106 aaPredicted RBP8.5□□□□□ -1.05
CCDC28B-205ENST00000483009 Q6Q795 121 aa8.5□□□□□ -1.05
CCDC28B-205ENST00000483009 DNAL4O96015 105 aa8.49□□□□□ -1.05
CCDC28B-205ENST00000483009 COX6CP09669 75 aa8.49□□□□□ -1.05
CCDC28B-205ENST00000483009 PCOTHQ58A44 107 aa8.49□□□□□ -1.05
CCDC28B-205ENST00000483009 H3BMG7 143 aa8.48□□□□□ -1.05
CCDC28B-205ENST00000483009 LST1O00453 97 aa8.47□□□□□ -1.05
CCDC28B-205ENST00000483009 TEN1Q86WV5 123 aa8.47□□□□□ -1.05
CCDC28B-205ENST00000483009 ORMDL1Q9P0S3 153 aa8.47□□□□□ -1.05
CCDC28B-205ENST00000483009 SS18L2Q9UHA2 77 aa8.47□□□□□ -1.05
CCDC28B-205ENST00000483009 H3BQ85 93 aa8.45□□□□□ -1.06
CCDC28B-205ENST00000483009 RPL37P61927 97 aaKnown RBP8.44□□□□□ -1.06
CCDC28B-205ENST00000483009 A0A087WSZ3 146 aa8.42□□□□□ -1.06
CCDC28B-205ENST00000483009 TMEM256-PLSCR3K7ERE1 68 aa8.41□□□□□ -1.06
CCDC28B-205ENST00000483009 A0A1W2PNM2 257 aa8.4□□□□□ -1.06
CCDC28B-205ENST00000483009 TRACP01848 142 aa8.4□□□□□ -1.06
CCDC28B-205ENST00000483009 SMIM6P0DI80 62 aa8.4□□□□□ -1.06
CCDC28B-205ENST00000483009 SCGB1C2P0DMR2 95 aa8.4□□□□□ -1.06
CCDC28B-205ENST00000483009 ANKRD29Q8N6D5 301 aa8.39□□□□□ -1.07
CCDC28B-205ENST00000483009 A0A1B0GV72 72 aa8.38□□□□□ -1.07
CCDC28B-205ENST00000483009 M0R143 59 aa8.38□□□□□ -1.07
CCDC28B-205ENST00000483009 OBSCN-AS1Q96MR7 158 aa8.38□□□□□ -1.07
CCDC28B-205ENST00000483009 UBE2V1Q13404 147 aa8.37□□□□□ -1.07
CCDC28B-205ENST00000483009 TRBV7-4A0A0J9YYF1 115 aa8.35□□□□□ -1.07
CCDC28B-205ENST00000483009 Q96NJ1 140 aa8.35□□□□□ -1.07
CCDC28B-205ENST00000483009 Q75L30 129 aa8.33□□□□□ -1.08
CCDC28B-205ENST00000483009 KRTAP19-2Q3LHN2 52 aa8.32□□□□□ -1.08
CCDC28B-205ENST00000483009 CCKP06307 115 aa8.31□□□□□ -1.08
CCDC28B-205ENST00000483009 LCE2CQ5TA81 110 aa8.31□□□□□ -1.08
CCDC28B-205ENST00000483009 SIGMAR1Q99720 223 aa8.3□□□□□ -1.08
CCDC28B-205ENST00000483009 BAALC-AS2P0C853 105 aa8.29□□□□□ -1.08
CCDC28B-205ENST00000483009 NAA38Q9BRA0 125 aaKnown RBP8.29□□□□□ -1.08
CCDC28B-205ENST00000483009 RBM3P98179 157 aaKnown RBP8.28□□□□□ -1.08
CCDC28B-205ENST00000483009 ATP11AUNQ6ZP68 121 aa8.28□□□□□ -1.08
CCDC28B-205ENST00000483009 TSTD3H0UI37 97 aa8.27□□□□□ -1.09
CCDC28B-205ENST00000483009 ATXN8Q156A1 80 aa8.27□□□□□ -1.09
CCDC28B-205ENST00000483009 IGKV4-1P06312 121 aa8.26□□□□□ -1.09
CCDC28B-205ENST00000483009 C20orf166-AS1Q96NR2 134 aa8.26□□□□□ -1.09
CCDC28B-205ENST00000483009 DSCR8Q96T75 97 aa8.26□□□□□ -1.09
CCDC28B-205ENST00000483009 VPS25Q9BRG1 176 aa8.25□□□□□ -1.09
CCDC28B-205ENST00000483009 A8MUU9 505 aa8.24□□□□□ -1.09
CCDC28B-205ENST00000483009 DSCR10P59022 87 aa8.24□□□□□ -1.09
CCDC28B-205ENST00000483009 LINC00472Q9H8W2 130 aa8.24□□□□□ -1.09
CCDC28B-205ENST00000483009 LOC105371267A0A1B0GV96 52 aa8.23□□□□□ -1.09
CCDC28B-205ENST00000483009 LYRM7Q5U5X0 104 aa8.22□□□□□ -1.09
CCDC28B-205ENST00000483009 KRTAP9-2Q9BYQ4 174 aa8.22□□□□□ -1.09
CCDC28B-205ENST00000483009 C9JAW5 83 aa8.21□□□□□ -1.1
CCDC28B-205ENST00000483009 MT1HP80294 61 aa8.21□□□□□ -1.1
CCDC28B-205ENST00000483009 BATFQ16520 125 aa8.21□□□□□ -1.1
CCDC28B-205ENST00000483009 DEFB116Q30KQ4 102 aa8.21□□□□□ -1.1
CCDC28B-205ENST00000483009 LINC00313P59037 77 aa8.2□□□□□ -1.1
CCDC28B-205ENST00000483009 C21orf62-AS1Q17RA5 79 aa8.19□□□□□ -1.1
CCDC28B-205ENST00000483009 JMJD7-PLA2G4BH0Y9G9 81 aa8.18□□□□□ -1.1
CCDC28B-205ENST00000483009 COX6B2Q6YFQ2 88 aa8.18□□□□□ -1.1
CCDC28B-205ENST00000483009 TRBV20-1A0A075B6N2 111 aa8.17□□□□□ -1.1
CCDC28B-205ENST00000483009 KRTAP16-1A8MUX0 517 aa8.16□□□□□ -1.1
CCDC28B-205ENST00000483009 IGHV6-1A0A0B4J1U7 121 aa8.15□□□□□ -1.1
CCDC28B-205ENST00000483009 NOTCH2NLQ7Z3S9 236 aa8.15□□□□□ -1.1
CCDC28B-205ENST00000483009 LOC110117498A0A087WWA1 95 aa8.14□□□□□ -1.11
CCDC28B-205ENST00000483009 Q6ZQT0 140 aa8.14□□□□□ -1.11
CCDC28B-205ENST00000483009 PDE6GP18545 87 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms