RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 PCNTO95613 3336 aa7.39□□□□□ -1.23
PTPRE-208ENST00000479896 KRTAP26-1Q6PEX3 210 aa7.39□□□□□ -1.23
PTPRE-208ENST00000479896 RPL37P61927 97 aaKnown RBP7.39□□□□□ -1.23
PTPRE-208ENST00000479896 A0A0A0MQY5 61 aa7.38□□□□□ -1.23
PTPRE-208ENST00000479896 BPTFQ12830 3046 aa7.38□□□□□ -1.23
PTPRE-208ENST00000479896 MGAM2Q2M2H8 2515 aa7.36□□□□□ -1.23
PTPRE-208ENST00000479896 ROMO1P60602 79 aa7.34□□□□□ -1.23
PTPRE-208ENST00000479896 H1FX-AS1Q4G0G2 97 aa7.34□□□□□ -1.23
PTPRE-208ENST00000479896 ADM2Q7Z4H4 148 aa7.34□□□□□ -1.23
PTPRE-208ENST00000479896 CYSTM1Q9H1C7 97 aa7.32□□□□□ -1.24
PTPRE-208ENST00000479896 Q6ZR54 194 aa7.32□□□□□ -1.24
PTPRE-208ENST00000479896 DNAH12Q6ZR08 3092 aa7.3□□□□□ -1.24
PTPRE-208ENST00000479896 FLNBO75369 2602 aaKnown RBP7.3□□□□□ -1.24
PTPRE-208ENST00000479896 Q5VV11 94 aa7.29□□□□□ -1.24
PTPRE-208ENST00000479896 PRAC1Q96KF2 57 aa7.28□□□□□ -1.24
PTPRE-208ENST00000479896 USP24Q9UPU5 2620 aa7.25□□□□□ -1.25
PTPRE-208ENST00000479896 PANO1I0J062 215 aa7.24□□□□□ -1.25
PTPRE-208ENST00000479896 RPS29P62273 56 aaKnown RBP7.22□□□□□ -1.25
PTPRE-208ENST00000479896 A0A087X002 238 aa7.22□□□□□ -1.25
PTPRE-208ENST00000479896 FLNAP21333 2647 aaKnown RBP7.19□□□□□ -1.26
PTPRE-208ENST00000479896 KRTAP4-16G5E9R7 235 aaPredicted RBP7.19□□□□□ -1.26
PTPRE-208ENST00000479896 RANBP2P49792 3224 aaKnown RBP7.18□□□□□ -1.26
PTPRE-208ENST00000479896 SPATA8Q6RVD6 105 aa7.18□□□□□ -1.26
PTPRE-208ENST00000479896 ASB16-AS1Q495Z4 193 aa7.15□□□□□ -1.27
PTPRE-208ENST00000479896 ITPR3Q14573 2671 aa7.14□□□□□ -1.27
PTPRE-208ENST00000479896 HELZ2Q9BYK8 2649 aaKnown RBP7.12□□□□□ -1.27
PTPRE-208ENST00000479896 KRTAP29-1A8MX34 341 aaPredicted RBP7.12□□□□□ -1.27
PTPRE-208ENST00000479896 MKI67P46013 3256 aaKnown RBP7.12□□□□□ -1.27
PTPRE-208ENST00000479896 HTTP42858 3142 aa7.11□□□□□ -1.27
PTPRE-208ENST00000479896 A8MUU9 505 aa7.1□□□□□ -1.27
PTPRE-208ENST00000479896 LAMA3Q16787 3333 aa7.08□□□□□ -1.28
PTPRE-208ENST00000479896 Q6ZRN7 208 aaPredicted RBP7.08□□□□□ -1.28
PTPRE-208ENST00000479896 ATRQ13535 2644 aa7.07□□□□□ -1.28
PTPRE-208ENST00000479896 C20orf166-AS1Q96NR2 134 aa7.07□□□□□ -1.28
PTPRE-208ENST00000479896 MAST4O15021 2626 aa7.07□□□□□ -1.28
PTPRE-208ENST00000479896 A0A0C4DFX4 3053 aa7.06□□□□□ -1.28
PTPRE-208ENST00000479896 BRCA2P51587 3418 aa7.06□□□□□ -1.28
PTPRE-208ENST00000479896 KRTAP21-3Q3LHN1 58 aa7.05□□□□□ -1.28
PTPRE-208ENST00000479896 CHD7Q9P2D1 2997 aa7.05□□□□□ -1.28
PTPRE-208ENST00000479896 NOTCH2NLQ7Z3S9 236 aa7.04□□□□□ -1.28
PTPRE-208ENST00000479896 H3BS24 57 aa7.02□□□□□ -1.29
PTPRE-208ENST00000479896 KRTAP11-1Q8IUC1 163 aa7□□□□□ -1.29
PTPRE-208ENST00000479896 C5orf42Q9H799 3197 aa6.99□□□□□ -1.29
PTPRE-208ENST00000479896 KRTAP13-2Q52LG2 175 aa6.99□□□□□ -1.29
PTPRE-208ENST00000479896 STAB1Q9NY15 2570 aa6.95□□□□□ -1.3
PTPRE-208ENST00000479896 CHD9Q3L8U1 2897 aa6.94□□□□□ -1.3
PTPRE-208ENST00000479896 PRUNE2Q8WUY3 3088 aa6.93□□□□□ -1.3
PTPRE-208ENST00000479896 TNP1P09430 55 aa6.92□□□□□ -1.3
PTPRE-208ENST00000479896 A8MU10 97 aa6.92□□□□□ -1.3
PTPRE-208ENST00000479896 KRTAP13-1Q8IUC0 172 aa6.91□□□□□ -1.3
PTPRE-208ENST00000479896 CFAP46Q8IYW2 2715 aa6.91□□□□□ -1.3
PTPRE-208ENST00000479896 KRTAP7-1Q8IUC3 87 aa6.89□□□□□ -1.31
PTPRE-208ENST00000479896 PRRC2CQ9Y520 2896 aaKnown RBP6.88□□□□□ -1.31
PTPRE-208ENST00000479896 KRTAP25-1Q3LHN0 102 aa6.87□□□□□ -1.31
PTPRE-208ENST00000479896 FLG2Q5D862 2391 aaPredicted RBP6.85□□□□□ -1.31
PTPRE-208ENST00000479896 LAMA2P24043 3122 aaKnown RBP6.8□□□□□ -1.32
PTPRE-208ENST00000479896 TRANK1O15050 2925 aa6.79□□□□□ -1.32
PTPRE-208ENST00000479896 NBEAL1Q6ZS30 2694 aa6.78□□□□□ -1.32
PTPRE-208ENST00000479896 KRTAP16-1A8MUX0 517 aa6.78□□□□□ -1.32
PTPRE-208ENST00000479896 UNC80Q8N2C7 3258 aa6.76□□□□□ -1.33
PTPRE-208ENST00000479896 DMBT1Q9UGM3 2413 aaPredicted RBP6.76□□□□□ -1.33
PTPRE-208ENST00000479896 CDH23Q9H251 3354 aa6.74□□□□□ -1.33
PTPRE-208ENST00000479896 ZNF292O60281 2723 aa6.74□□□□□ -1.33
PTPRE-208ENST00000479896 A6NN06 94 aa6.73□□□□□ -1.33
PTPRE-208ENST00000479896 C10orf95Q9H7T3 257 aa6.73□□□□□ -1.33
PTPRE-208ENST00000479896 KRTAP10-8P60410 259 aa6.73□□□□□ -1.33
PTPRE-208ENST00000479896 TEX15Q9BXT5 2789 aa6.72□□□□□ -1.33
PTPRE-208ENST00000479896 SZT2Q5T011 3432 aa6.71□□□□□ -1.34
PTPRE-208ENST00000479896 TEP1Q99973 2627 aaKnown RBP6.71□□□□□ -1.34
PTPRE-208ENST00000479896 XP32Q5T750 250 aa6.71□□□□□ -1.34
PTPRE-208ENST00000479896 A0A1B0GVY2 172 aa6.69□□□□□ -1.34
PTPRE-208ENST00000479896 CENPEQ02224 2701 aa6.69□□□□□ -1.34
PTPRE-208ENST00000479896 XIRP2A4UGR9 3374 aa6.68□□□□□ -1.34
PTPRE-208ENST00000479896 PP632Q6XCG6 107 aa6.67□□□□□ -1.34
PTPRE-208ENST00000479896 COL6A5A8TX70 2615 aa6.66□□□□□ -1.34
PTPRE-208ENST00000479896 BAHCC1Q9P281 2608 aa6.65□□□□□ -1.34
PTPRE-208ENST00000479896 TRIOO75962 3097 aa6.65□□□□□ -1.35
PTPRE-208ENST00000479896 SETXQ7Z333 2677 aaKnown RBP6.64□□□□□ -1.35
PTPRE-208ENST00000479896 TPRXLQ17RH7 258 aa6.64□□□□□ -1.35
PTPRE-208ENST00000479896 WDFY4Q6ZS81 3184 aa6.64□□□□□ -1.35
PTPRE-208ENST00000479896 CHD6Q8TD26 2715 aa6.62□□□□□ -1.35
PTPRE-208ENST00000479896 PRO2289Q9P1D8 64 aa6.62□□□□□ -1.35
PTPRE-208ENST00000479896 MGAQ8IWI9 3026 aa6.62□□□□□ -1.35
PTPRE-208ENST00000479896 COL6A3P12111 3177 aa6.61□□□□□ -1.35
PTPRE-208ENST00000479896 NDUFAF8A1L188 74 aa6.61□□□□□ -1.35
PTPRE-208ENST00000479896 KRTAP10-10P60014 251 aa6.61□□□□□ -1.35
PTPRE-208ENST00000479896 UNC79Q9P2D8 2635 aa6.61□□□□□ -1.35
PTPRE-208ENST00000479896 KRTAP1-4P0C5Y4 121 aa6.61□□□□□ -1.35
PTPRE-208ENST00000479896 DSPP15924 2871 aaKnown RBP6.6□□□□□ -1.35
PTPRE-208ENST00000479896 TNRC18O15417 2968 aaPredicted RBP6.57□□□□□ -1.36
PTPRE-208ENST00000479896 AKAP13Q12802 2813 aa6.55□□□□□ -1.36
PTPRE-208ENST00000479896 GCN1Q92616 2671 aaKnown RBP6.54□□□□□ -1.36
PTPRE-208ENST00000479896 VCANP13611 3396 aa6.53□□□□□ -1.36
PTPRE-208ENST00000479896 STAB2Q8WWQ8 2551 aa6.52□□□□□ -1.36
PTPRE-208ENST00000479896 CFAP54Q96N23 3096 aa6.52□□□□□ -1.37
PTPRE-208ENST00000479896 IGSF10Q6WRI0 2623 aa6.49□□□□□ -1.37
PTPRE-208ENST00000479896 NOTCH1P46531 2555 aa6.49□□□□□ -1.37
PTPRE-208ENST00000479896 NSD1Q96L73 2696 aaPredicted RBP6.46□□□□□ -1.37
PTPRE-208ENST00000479896 KRTAP13-3Q3SY46 172 aa6.45□□□□□ -1.38
PTPRE-208ENST00000479896 KMT2BQ9UMN6 2715 aaPredicted RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms