RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 M0R2T5 61 aa5.42□□□□□ -1.54
SYNE1-224ENST00000478916 R4GN34 69 aa5.42□□□□□ -1.54
SYNE1-224ENST00000478916 ITPR3Q14573 2671 aa5.42□□□□□ -1.54
SYNE1-224ENST00000478916 OXTP01178 125 aa5.41□□□□□ -1.54
SYNE1-224ENST00000478916 H1FX-AS1Q4G0G2 97 aa5.39□□□□□ -1.55
SYNE1-224ENST00000478916 MAST4O15021 2626 aa5.39□□□□□ -1.55
SYNE1-224ENST00000478916 LCE6AA0A183 80 aa5.38□□□□□ -1.55
SYNE1-224ENST00000478916 LINC00472Q9H8W2 130 aa5.38□□□□□ -1.55
SYNE1-224ENST00000478916 ATRQ13535 2644 aa5.37□□□□□ -1.55
SYNE1-224ENST00000478916 FLG2Q5D862 2391 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-224ENST00000478916 Q5VSD8 79 aa5.36□□□□□ -1.55
SYNE1-224ENST00000478916 PRRC2CQ9Y520 2896 aaKnown RBP5.35□□□□□ -1.55
SYNE1-224ENST00000478916 SPRR1AP35321 89 aa5.35□□□□□ -1.55
SYNE1-224ENST00000478916 CDH23Q9H251 3354 aa5.33□□□□□ -1.56
SYNE1-224ENST00000478916 SEC61BP60468 96 aaKnown RBP5.33□□□□□ -1.56
SYNE1-224ENST00000478916 CFAP46Q8IYW2 2715 aa5.33□□□□□ -1.56
SYNE1-224ENST00000478916 SPRR1BP22528 89 aa5.31□□□□□ -1.56
SYNE1-224ENST00000478916 BPTFQ12830 3046 aa5.3□□□□□ -1.56
SYNE1-224ENST00000478916 M0QZ58 72 aa5.3□□□□□ -1.56
SYNE1-224ENST00000478916 A0A0C4DFX4 3053 aa5.29□□□□□ -1.56
SYNE1-224ENST00000478916 Q8NDZ9 215 aa5.29□□□□□ -1.56
SYNE1-224ENST00000478916 KRTAP25-1Q3LHN0 102 aa5.29□□□□□ -1.56
SYNE1-224ENST00000478916 KRTAP26-1Q6PEX3 210 aa5.29□□□□□ -1.56
SYNE1-224ENST00000478916 KRTAP1-5Q9BYS1 174 aa5.29□□□□□ -1.56
SYNE1-224ENST00000478916 SPATA8Q6RVD6 105 aa5.28□□□□□ -1.56
SYNE1-224ENST00000478916 Q6ZR54 194 aa5.28□□□□□ -1.56
SYNE1-224ENST00000478916 PLAC4Q8WY50 150 aa5.28□□□□□ -1.56
SYNE1-224ENST00000478916 KRTAP10-1P60331 282 aa5.27□□□□□ -1.57
SYNE1-224ENST00000478916 A6NN06 94 aa5.26□□□□□ -1.57
SYNE1-224ENST00000478916 DNAH12Q6ZR08 3092 aa5.26□□□□□ -1.57
SYNE1-224ENST00000478916 KRTAP10-2P60368 255 aa5.25□□□□□ -1.57
SYNE1-224ENST00000478916 ADM2Q7Z4H4 148 aa5.24□□□□□ -1.57
SYNE1-224ENST00000478916 NDUFAF8A1L188 74 aa5.22□□□□□ -1.57
SYNE1-224ENST00000478916 LAMA3Q16787 3333 aa5.22□□□□□ -1.57
SYNE1-224ENST00000478916 C20orf166-AS1Q96NR2 134 aa5.21□□□□□ -1.58
SYNE1-224ENST00000478916 STAB1Q9NY15 2570 aa5.2□□□□□ -1.58
SYNE1-224ENST00000478916 DNAH14Q0VDD8 3507 aa5.2□□□□□ -1.58
SYNE1-224ENST00000478916 KRTAP29-1A8MX34 341 aaPredicted RBP5.18□□□□□ -1.58
SYNE1-224ENST00000478916 CENPEQ02224 2701 aa5.18□□□□□ -1.58
SYNE1-224ENST00000478916 XIRP2A4UGR9 3374 aa5.17□□□□□ -1.58
SYNE1-224ENST00000478916 PANO1I0J062 215 aa5.17□□□□□ -1.58
SYNE1-224ENST00000478916 CHD7Q9P2D1 2997 aa5.16□□□□□ -1.58
SYNE1-224ENST00000478916 CEP350Q5VT06 3117 aa5.14□□□□□ -1.59
SYNE1-224ENST00000478916 ZNF292O60281 2723 aa5.14□□□□□ -1.59
SYNE1-224ENST00000478916 LAMA2P24043 3122 aaKnown RBP5.14□□□□□ -1.59
SYNE1-224ENST00000478916 RANBP2P49792 3224 aaKnown RBP5.13□□□□□ -1.59
SYNE1-224ENST00000478916 C5orf42Q9H799 3197 aa5.13□□□□□ -1.59
SYNE1-224ENST00000478916 TEP1Q99973 2627 aaKnown RBP5.13□□□□□ -1.59
SYNE1-224ENST00000478916 TEX15Q9BXT5 2789 aa5.13□□□□□ -1.59
SYNE1-224ENST00000478916 BRCA2P51587 3418 aa5.13□□□□□ -1.59
SYNE1-224ENST00000478916 REV3LO60673 3130 aa5.13□□□□□ -1.59
SYNE1-224ENST00000478916 CHD9Q3L8U1 2897 aa5.12□□□□□ -1.59
SYNE1-224ENST00000478916 BAHCC1Q9P281 2608 aa5.11□□□□□ -1.59
SYNE1-224ENST00000478916 A8MU10 97 aa5.11□□□□□ -1.59
SYNE1-224ENST00000478916 SETXQ7Z333 2677 aaKnown RBP5.11□□□□□ -1.59
SYNE1-224ENST00000478916 KRTAP21-3Q3LHN1 58 aa5.11□□□□□ -1.59
SYNE1-224ENST00000478916 COL6A5A8TX70 2615 aa5.11□□□□□ -1.59
SYNE1-224ENST00000478916 MKI67P46013 3256 aaKnown RBP5.1□□□□□ -1.59
SYNE1-224ENST00000478916 UNC79Q9P2D8 2635 aa5.09□□□□□ -1.59
SYNE1-224ENST00000478916 A0A087X002 238 aa5.09□□□□□ -1.6
SYNE1-224ENST00000478916 KRTAP4-16G5E9R7 235 aaPredicted RBP5.08□□□□□ -1.6
SYNE1-224ENST00000478916 RPS29P62273 56 aaKnown RBP5.08□□□□□ -1.6
SYNE1-224ENST00000478916 NBEAL1Q6ZS30 2694 aa5.07□□□□□ -1.6
SYNE1-224ENST00000478916 DMBT1Q9UGM3 2413 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-224ENST00000478916 VCANP13611 3396 aa5.06□□□□□ -1.6
SYNE1-224ENST00000478916 A8MUU9 505 aa5.05□□□□□ -1.6
SYNE1-224ENST00000478916 CHD6Q8TD26 2715 aa5.05□□□□□ -1.6
SYNE1-224ENST00000478916 IGSF10Q6WRI0 2623 aa5.04□□□□□ -1.6
SYNE1-224ENST00000478916 Q6ZRN7 208 aaPredicted RBP5.04□□□□□ -1.6
SYNE1-224ENST00000478916 TRANK1O15050 2925 aa5.04□□□□□ -1.6
SYNE1-224ENST00000478916 C10orf95Q9H7T3 257 aa5.03□□□□□ -1.6
SYNE1-224ENST00000478916 AKAP13Q12802 2813 aa5.03□□□□□ -1.6
SYNE1-224ENST00000478916 NOTCH2NLQ7Z3S9 236 aa5.02□□□□□ -1.61
SYNE1-224ENST00000478916 GCN1Q92616 2671 aaKnown RBP5□□□□□ -1.61
SYNE1-224ENST00000478916 MGAQ8IWI9 3026 aa5□□□□□ -1.61
SYNE1-224ENST00000478916 KRTAP11-1Q8IUC1 163 aa5□□□□□ -1.61
SYNE1-224ENST00000478916 COL6A3P12111 3177 aa5□□□□□ -1.61
SYNE1-224ENST00000478916 TNP1P09430 55 aa5□□□□□ -1.61
SYNE1-224ENST00000478916 NOTCH1P46531 2555 aa4.99□□□□□ -1.61
SYNE1-224ENST00000478916 HTTP42858 3142 aa4.98□□□□□ -1.61
SYNE1-224ENST00000478916 SZT2Q5T011 3432 aa4.98□□□□□ -1.61
SYNE1-224ENST00000478916 CELSR3Q9NYQ7 3312 aa4.98□□□□□ -1.61
SYNE1-224ENST00000478916 WDFY3Q8IZQ1 3526 aa4.97□□□□□ -1.61
SYNE1-224ENST00000478916 MYO15AQ9UKN7 3530 aa4.96□□□□□ -1.62
SYNE1-224ENST00000478916 ITPR2Q14571 2701 aa4.94□□□□□ -1.62
SYNE1-224ENST00000478916 FREM2Q5SZK8 3169 aa4.94□□□□□ -1.62
SYNE1-224ENST00000478916 VPS13AQ96RL7 3174 aa4.94□□□□□ -1.62
SYNE1-224ENST00000478916 DSPP15924 2871 aaKnown RBP4.93□□□□□ -1.62
SYNE1-224ENST00000478916 PP632Q6XCG6 107 aa4.92□□□□□ -1.62
SYNE1-224ENST00000478916 NSD1Q96L73 2696 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-224ENST00000478916 KRTAP13-2Q52LG2 175 aa4.91□□□□□ -1.62
SYNE1-224ENST00000478916 KMT2BQ9UMN6 2715 aaPredicted RBP4.9□□□□□ -1.62
SYNE1-224ENST00000478916 KRTAP13-1Q8IUC0 172 aa4.89□□□□□ -1.63
SYNE1-224ENST00000478916 CFAP54Q96N23 3096 aa4.88□□□□□ -1.63
SYNE1-224ENST00000478916 SPEGQ15772 3267 aa4.88□□□□□ -1.63
SYNE1-224ENST00000478916 KRTAP7-1Q8IUC3 87 aa4.88□□□□□ -1.63
SYNE1-224ENST00000478916 UBR5O95071 2799 aaPredicted RBP4.87□□□□□ -1.63
SYNE1-224ENST00000478916 UNC80Q8N2C7 3258 aa4.87□□□□□ -1.63
SYNE1-224ENST00000478916 MAP1AP78559 2803 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-224ENST00000478916 STAB2Q8WWQ8 2551 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms