RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 USH2AO75445 5202 aa9.1□□□□□ -0.95
VIM-204ENST00000478746 RPL37P61927 97 aaKnown RBP9.1□□□□□ -0.95
VIM-204ENST00000478746 HSD52Q0P140 79 aa9.1□□□□□ -0.95
VIM-204ENST00000478746 SSPOA2VEC9 5147 aa9.1□□□□□ -0.95
VIM-204ENST00000478746 HINT1P49773 126 aaPredicted RBP9.09□□□□□ -0.95
VIM-204ENST00000478746 CEND1Q8N111 149 aa9.09□□□□□ -0.95
VIM-204ENST00000478746 CBY1Q9Y3M2 126 aa9.08□□□□□ -0.96
VIM-204ENST00000478746 TRAV13-2A0A0B4J235 113 aa9.07□□□□□ -0.96
VIM-204ENST00000478746 TMEM238LA0A1B0GVL6 79 aa9.07□□□□□ -0.96
VIM-204ENST00000478746 A6NDN8 102 aa9.07□□□□□ -0.96
VIM-204ENST00000478746 A6NJY4 79 aa9.07□□□□□ -0.96
VIM-204ENST00000478746 SPRR1BP22528 89 aa9.07□□□□□ -0.96
VIM-204ENST00000478746 LAMTOR3Q9UHA4 124 aa9.07□□□□□ -0.96
VIM-204ENST00000478746 CD164Q04900 197 aa9.05□□□□□ -0.96
VIM-204ENST00000478746 H7C2G1 150 aa9.03□□□□□ -0.96
VIM-204ENST00000478746 FXYD2P54710 66 aa9.03□□□□□ -0.96
VIM-204ENST00000478746 Q6Q795 121 aa9.03□□□□□ -0.96
VIM-204ENST00000478746 RAB37Q96AX2 223 aa9.03□□□□□ -0.96
VIM-204ENST00000478746 CFC1P0CG37 223 aa9.02□□□□□ -0.97
VIM-204ENST00000478746 C1orf195Q5TG92 126 aa9.02□□□□□ -0.97
VIM-204ENST00000478746 DHRS4-AS1Q9P1J3 65 aa9.02□□□□□ -0.97
VIM-204ENST00000478746 A0A0B4J2C4 111 aa9.01□□□□□ -0.97
VIM-204ENST00000478746 FCGBPQ9Y6R7 5405 aaPredicted RBP9.01□□□□□ -0.97
VIM-204ENST00000478746 M0R143 59 aa9□□□□□ -0.97
VIM-204ENST00000478746 Q5XG85 94 aa9□□□□□ -0.97
VIM-204ENST00000478746 NHP2Q9NX24 153 aaKnown RBP8.99□□□□□ -0.97
VIM-204ENST00000478746 BVES-AS1Q5T3Y7 98 aa8.98□□□□□ -0.97
VIM-204ENST00000478746 Q1RN00 199 aa8.97□□□□□ -0.97
VIM-204ENST00000478746 C6orf99Q4VX62 202 aa8.97□□□□□ -0.97
VIM-204ENST00000478746 SMIM11BQ8TCY0 68 aa8.97□□□□□ -0.97
VIM-204ENST00000478746 PRO1854Q9UHT4 67 aa8.97□□□□□ -0.97
VIM-204ENST00000478746 DEFB105AQ8NG35 78 aa8.95□□□□□ -0.98
VIM-204ENST00000478746 KRTAP9-8Q9BYQ0 159 aa8.95□□□□□ -0.98
VIM-204ENST00000478746 K7ERJ3 54 aa8.94□□□□□ -0.98
VIM-204ENST00000478746 COX7BP24311 80 aa8.94□□□□□ -0.98
VIM-204ENST00000478746 ELOF1P60002 83 aaKnown RBP8.94□□□□□ -0.98
VIM-204ENST00000478746 SMIM29Q86T20 159 aa8.94□□□□□ -0.98
VIM-204ENST00000478746 TRBV7-6A0A0J9YX20 115 aa8.93□□□□□ -0.98
VIM-204ENST00000478746 A0A1B0GWB2 263 aa8.93□□□□□ -0.98
VIM-204ENST00000478746 VAMP3Q15836 100 aa8.93□□□□□ -0.98
VIM-204ENST00000478746 TEX49A0A1B0GTD5 131 aa8.92□□□□□ -0.98
VIM-204ENST00000478746 BATFQ16520 125 aa8.91□□□□□ -0.98
VIM-204ENST00000478746 A0A0G2JQZ4 141 aa8.89□□□□□ -0.99
VIM-204ENST00000478746 ATP11AUNQ6ZP68 121 aa8.88□□□□□ -0.99
VIM-204ENST00000478746 PCP4L1A6NKN8 68 aa8.87□□□□□ -0.99
VIM-204ENST00000478746 TCL1BO95988 128 aa8.86□□□□□ -0.99
VIM-204ENST00000478746 PSMB2P49721 201 aa8.86□□□□□ -0.99
VIM-204ENST00000478746 KRTAP19-1Q8IUB9 90 aa8.86□□□□□ -0.99
VIM-204ENST00000478746 H0YGX0 51 aa8.84□□□□□ -0.99
VIM-204ENST00000478746 TRIAP1O43715 76 aa8.84□□□□□ -0.99
VIM-204ENST00000478746 IGLV5-48A0A075B6I7 105 aa8.83□□□□□ -1
VIM-204ENST00000478746 COX6CP09669 75 aa8.83□□□□□ -1
VIM-204ENST00000478746 LINC00575Q6W349 94 aa8.83□□□□□ -1
VIM-204ENST00000478746 MACF1Q9UPN3 7388 aaKnown RBP8.81□□□□□ -1
VIM-204ENST00000478746 SNCGO76070 127 aa8.81□□□□□ -1
VIM-204ENST00000478746 Q75L30 129 aa8.81□□□□□ -1
VIM-204ENST00000478746 SYNE2Q8WXH0 6885 aaKnown RBP8.81□□□□□ -1
VIM-204ENST00000478746 hADV29S1A0JD25 119 aa8.8□□□□□ -1
VIM-204ENST00000478746 SNHG12Q9BXW3 62 aa8.8□□□□□ -1
VIM-204ENST00000478746 SCGB1C2P0DMR2 95 aa8.79□□□□□ -1
VIM-204ENST00000478746 OBSCN-AS1Q96MR7 158 aa8.78□□□□□ -1
VIM-204ENST00000478746 LCE2BO14633 110 aa8.77□□□□□ -1.01
VIM-204ENST00000478746 CLEC2BQ92478 149 aa8.77□□□□□ -1.01
VIM-204ENST00000478746 NAA38Q9BRA0 125 aaKnown RBP8.77□□□□□ -1.01
VIM-204ENST00000478746 A0A1B0GX51 115 aa8.76□□□□□ -1.01
VIM-204ENST00000478746 MT2AP02795 61 aa8.76□□□□□ -1.01
VIM-204ENST00000478746 FAM218AQ96MZ4 157 aa8.76□□□□□ -1.01
VIM-204ENST00000478746 Q6ZQY7 126 aa8.75□□□□□ -1.01
VIM-204ENST00000478746 H3BUT2 72 aa8.74□□□□□ -1.01
VIM-204ENST00000478746 COL5A1-AS1Q5SY13 56 aa8.74□□□□□ -1.01
VIM-204ENST00000478746 LYRM7Q5U5X0 104 aa8.74□□□□□ -1.01
VIM-204ENST00000478746 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.74□□□□□ -1.01
VIM-204ENST00000478746 TRBV20-1A0A075B6N2 111 aa8.73□□□□□ -1.01
VIM-204ENST00000478746 C9orf118A6NHY6 69 aa8.73□□□□□ -1.01
VIM-204ENST00000478746 TAX1BP3O14907 124 aa8.73□□□□□ -1.01
VIM-204ENST00000478746 F8WEM9 126 aa8.72□□□□□ -1.01
VIM-204ENST00000478746 DNAL4O96015 105 aa8.72□□□□□ -1.01
VIM-204ENST00000478746 OCIAD2Q56VL3 154 aa8.7□□□□□ -1.02
VIM-204ENST00000478746 LST1O00453 97 aa8.69□□□□□ -1.02
VIM-204ENST00000478746 GHRHP01286 108 aa8.69□□□□□ -1.02
VIM-204ENST00000478746 KRTAP9-3Q9BYQ3 159 aa8.69□□□□□ -1.02
VIM-204ENST00000478746 TRACP01848 142 aa8.68□□□□□ -1.02
VIM-204ENST00000478746 MT1FP04733 61 aa8.68□□□□□ -1.02
VIM-204ENST00000478746 ATXN8Q156A1 80 aa8.68□□□□□ -1.02
VIM-204ENST00000478746 PPDPFLQ8WWR9 84 aa8.68□□□□□ -1.02
VIM-204ENST00000478746 Q96NJ1 140 aa8.68□□□□□ -1.02
VIM-204ENST00000478746 A0A1W2PPM0 123 aa8.67□□□□□ -1.02
VIM-204ENST00000478746 FABP2P12104 132 aa8.67□□□□□ -1.02
VIM-204ENST00000478746 KRTAP10-10P60014 251 aa8.67□□□□□ -1.02
VIM-204ENST00000478746 LINC00846Q9NV44 126 aa8.67□□□□□ -1.02
VIM-204ENST00000478746 TRBV7-7A0A0K0K1E9 115 aa8.66□□□□□ -1.02
VIM-204ENST00000478746 Q6JHZ5 121 aa8.66□□□□□ -1.02
VIM-204ENST00000478746 ORMDL1Q9P0S3 153 aa8.66□□□□□ -1.02
VIM-204ENST00000478746 H3BQ85 93 aa8.64□□□□□ -1.03
VIM-204ENST00000478746 IGFL1Q6UW32 110 aa8.63□□□□□ -1.03
VIM-204ENST00000478746 C20orf166-AS1Q96NR2 134 aa8.61□□□□□ -1.03
VIM-204ENST00000478746 FAM236DA0A1B0GTK5 79 aa8.6□□□□□ -1.03
VIM-204ENST00000478746 TMEM256-PLSCR3K7ERE1 68 aa8.6□□□□□ -1.03
VIM-204ENST00000478746 FAM236CP0DP71 79 aa8.6□□□□□ -1.03
VIM-204ENST00000478746 SPCS1Q9Y6A9 102 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms