RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 CEND1Q8N111 149 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 Q8N377 158 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 NKAPP1Q8N9T2 125 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 MRPL18Q9H0U6 180 aaKnown RBP2.51□□□□□ -2.01
USP4-209ENST00000475873 LINC00846Q9NV44 126 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 C22orf24Q9Y442 160 aa2.51□□□□□ -2.01
USP4-209ENST00000475873 ZNF706Q9Y5V0 76 aaPredicted RBP2.51□□□□□ -2.01
USP4-209ENST00000475873 HBDP02042 147 aa2.5□□□□□ -2.01
USP4-209ENST00000475873 LINC00313P59037 77 aa2.5□□□□□ -2.01
USP4-209ENST00000475873 C7orf65Q6ZTY9 151 aa2.5□□□□□ -2.01
USP4-209ENST00000475873 C2orf91Q6ZV80 131 aa2.5□□□□□ -2.01
USP4-209ENST00000475873 C5orf38Q86SI9 138 aa2.5□□□□□ -2.01
USP4-209ENST00000475873 NXT2Q9NPJ8 142 aaKnown RBP2.5□□□□□ -2.01
USP4-209ENST00000475873 CYTL1Q9NRR1 136 aa2.5□□□□□ -2.01
USP4-209ENST00000475873 IGLV9-49A0A0B4J1Y8 123 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 APCSP02743 223 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 MGPP08493 103 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 ARL14EPLP0DKL9 152 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 UBE2AP49459 152 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 KRTAP10-10P60014 251 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 Q8NBF4 154 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 PPP1R1CQ8WVI7 109 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 CDC42SE2Q9NRR3 84 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 GNG13Q9P2W3 67 aa2.49□□□□□ -2.01
USP4-209ENST00000475873 RPL37AP8A6NKH3 93 aa2.48□□□□□ -2.01
USP4-209ENST00000475873 LINC00310P59036 64 aa2.48□□□□□ -2.01
USP4-209ENST00000475873 TWIST1Q15672 202 aa2.48□□□□□ -2.01
USP4-209ENST00000475873 TMEM170BQ5T4T1 132 aa2.48□□□□□ -2.01
USP4-209ENST00000475873 SERP2Q8N6R1 65 aa2.48□□□□□ -2.01
USP4-209ENST00000475873 HIST1H4GQ99525 98 aa2.48□□□□□ -2.01
USP4-209ENST00000475873 C9orf92A6NGG3 77 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 F2Z2F3 143 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 CXCL6P80162 114 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 PRLHP81277 87 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 KIAA0087Q14695 138 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 RNASE13Q5GAN3 156 aaKnown RBP2.47□□□□□ -2.01
USP4-209ENST00000475873 S100A7L2Q5SY68 101 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 SPANXN1Q5VSR9 72 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 Q8N8P6 123 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 NRACQ8N912 160 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 FAM218AQ96MZ4 157 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 KRTAP2-2Q9BYT5 123 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 KRTAP2-1Q9BYU5 128 aa2.47□□□□□ -2.01
USP4-209ENST00000475873 IGHV6-1A0A0B4J1U7 121 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 H7C423 109 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 NDUFA1O15239 70 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 SPINK1P00995 79 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 GCHFRP30047 84 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 HIST1H4AP62805 103 aaKnown RBP2.46□□□□□ -2.02
USP4-209ENST00000475873 RBM3P98179 157 aaKnown RBP2.46□□□□□ -2.02
USP4-209ENST00000475873 LINC01554Q52M75 96 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 C2orf82Q6UX34 121 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 RPL39LQ96EH5 51 aaKnown RBP2.46□□□□□ -2.02
USP4-209ENST00000475873 LINC00167Q96N53 147 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 SMIM7Q9BQ49 75 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 XAGE1AQ9HD64 81 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 NHP2Q9NX24 153 aaKnown RBP2.46□□□□□ -2.02
USP4-209ENST00000475873 HIGD1BQ9P298 99 aa2.46□□□□□ -2.02
USP4-209ENST00000475873 PEX7O00628 323 aa2.45□□□□□ -2.02
USP4-209ENST00000475873 ACYP1P07311 99 aa2.45□□□□□ -2.02
USP4-209ENST00000475873 CKS2P33552 79 aa2.45□□□□□ -2.02
USP4-209ENST00000475873 FAM104BQ5XKR9 115 aa2.45□□□□□ -2.02
USP4-209ENST00000475873 SOSTDC1Q6X4U4 206 aa2.45□□□□□ -2.02
USP4-209ENST00000475873 NOTCH2NLQ7Z3S9 236 aa2.45□□□□□ -2.02
USP4-209ENST00000475873 CLEC2BQ92478 149 aa2.45□□□□□ -2.02
USP4-209ENST00000475873 LTAP01374 205 aa2.44□□□□□ -2.02
USP4-209ENST00000475873 CCL20P78556 96 aa2.44□□□□□ -2.02
USP4-209ENST00000475873 LINC00643Q86TS7 51 aa2.44□□□□□ -2.02
USP4-209ENST00000475873 FAM104AQ969W3 186 aa2.44□□□□□ -2.02
USP4-209ENST00000475873 C11orf52Q96A22 123 aa2.44□□□□□ -2.02
USP4-209ENST00000475873 CYSTM1Q9H1C7 97 aa2.44□□□□□ -2.02
USP4-209ENST00000475873 NDUFA12Q9UI09 145 aa2.44□□□□□ -2.02
USP4-209ENST00000475873 NDUFC1O43677 76 aa2.43□□□□□ -2.02
USP4-209ENST00000475873 CCKP06307 115 aa2.43□□□□□ -2.02
USP4-209ENST00000475873 FXYD2P54710 66 aa2.43□□□□□ -2.02
USP4-209ENST00000475873 SPRR4Q96PI1 79 aa2.43□□□□□ -2.02
USP4-209ENST00000475873 OSTCQ9NRP0 149 aa2.43□□□□□ -2.02
USP4-209ENST00000475873 TRBV30A0A0K0K1B3 111 aa2.42□□□□□ -2.02
USP4-209ENST00000475873 SDHAF1A6NFY7 115 aa2.42□□□□□ -2.02
USP4-209ENST00000475873 SLC25A20O43772 301 aa2.42□□□□□ -2.02
USP4-209ENST00000475873 RPL37P61927 97 aaKnown RBP2.42□□□□□ -2.02
USP4-209ENST00000475873 RPS29P62273 56 aaKnown RBP2.42□□□□□ -2.02
USP4-209ENST00000475873 FAM19A2Q8N3H0 131 aa2.42□□□□□ -2.02
USP4-209ENST00000475873 MPLKIPQ8TAP9 179 aa2.42□□□□□ -2.02
USP4-209ENST00000475873 LEPROTL1O95214 131 aa2.41□□□□□ -2.02
USP4-209ENST00000475873 NPYP01303 97 aa2.41□□□□□ -2.02
USP4-209ENST00000475873 IGKV2-28A0A075B6P5 120 aa2.4□□□□□ -2.03
USP4-209ENST00000475873 LOC107984156A0A0G2JMH3 177 aa2.4□□□□□ -2.03
USP4-209ENST00000475873 A6NN06 94 aa2.4□□□□□ -2.03
USP4-209ENST00000475873 LEPROTO15243 131 aa2.4□□□□□ -2.03
USP4-209ENST00000475873 IGKV2D-28P01615 120 aa2.4□□□□□ -2.03
USP4-209ENST00000475873 ADAMTSL4-AS1Q5T5F5 129 aa2.4□□□□□ -2.03
USP4-209ENST00000475873 ARL17AQ8IVW1 177 aa2.4□□□□□ -2.03
USP4-209ENST00000475873 CHCHD1Q96BP2 118 aaKnown RBP2.4□□□□□ -2.03
USP4-209ENST00000475873 TMEM167BQ9NRX6 74 aa2.4□□□□□ -2.03
USP4-209ENST00000475873 IGLV5-37A0A075B6J1 123 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 IGLV5-45A0A087WSX0 123 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 TRAV13-2A0A0B4J235 113 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 MYMXA0A1B0GTQ4 84 aa2.39□□□□□ -2.03
USP4-209ENST00000475873 H7BZZ5 65 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms