RNA–Protein interactions for RNA: ENST00000474742.1

HDAC9-222, Transcript of histone deacetylase 9, human

TSL 3

Gene HDAC9, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-222	ENST00000474742	WFDC10B	Q8IUB3	73 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	ASH1L	Q9NR48	2969 aa	Known RBP	0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	BPTF	Q12830	3046 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	HIVEP3	Q5T1R4	2406 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	GVINP1	Q7Z2Y8	2422 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	IGF2R	P11717	2491 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	TULP4	Q9NRJ4	1543 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	FSIP2	Q5CZC0	6907 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	ITSN2	Q9NZM3	1697 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	FAM208A	Q9UK61	1670 aa	Known RBP	0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	LY75	O60449	1722 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	DDX60	Q8IY21	1712 aa	Known RBP	0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742		A0A1B0GUL6	1792 aa		0.27	□□□□□ -2.37
HDAC9-222	ENST00000474742	WNK1	Q9H4A3	2382 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	ZFYVE26	Q68DK2	2539 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	POLQ	O75417	2590 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742		A0A0D9SG42	100 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	IGIP	A6NJ69	53 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	NDUFA1	O15239	70 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	CRIP1	P50238	77 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	DEFB106A	Q8N104	65 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	KAAG1	Q9UBP8	84 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742		U3KQA8	63 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	BIVM-ERCC5	R4GMW8	1640 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	DOT1L	Q8TEK3	1739 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	CSPG4	Q6UVK1	2322 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	NCOR1	O75376	2440 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	ZFHX3	Q15911	3703 aa		0.26	□□□□□ -2.37
HDAC9-222	ENST00000474742	BDP1	A6H8Y1	2624 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	CHD8	Q9HCK8	2581 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	CEP290	O15078	2479 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	EP300	Q09472	2414 aa	Predicted RBP	0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	PARP4	Q9UKK3	1724 aa	Known RBP	0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	NRXN3	Q9Y4C0	1643 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	GLI2	P10070	1586 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	LINC01546	A6NGU7	62 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742		M0QY20	66 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742		M0R2T5	61 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	DEFB130B	P0DP73	79 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	DEFB130A	P0DP74	79 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	WT1-AS	Q06250	92 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	TFF3	Q07654	80 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	MDN1	Q9NU22	5596 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	CHD9	Q3L8U1	2897 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	HECTD1	Q9ULT8	2610 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	MAP1B	P46821	2468 aa	Known RBP	0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	PKD1L2	Q7Z442	2459 aa		0.25	□□□□□ -2.37
HDAC9-222	ENST00000474742	TRANK1	O15050	2925 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	C4A	P0C0L4	1744 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	C4B	P0C0L5	1744 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	TJP1	Q07157	1748 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	CDC42BPA	Q5VT25	1732 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	TOGARAM1	Q9Y4F4	1720 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	LMO7	Q8WWI1	1683 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	USP24	Q9UPU5	2620 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	NCOR2	Q9Y618	2525 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	NAV2	Q8IVL1	2488 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	APC2	O95996	2303 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	C9orf92	A6NGG3	77 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742		A8MTW9	85 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	SNRPG	P62308	76 aa	Known RBP	0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	TOMM7	Q9P0U1	55 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	CHD6	Q8TD26	2715 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	ATR	Q13535	2644 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	MTOR	P42345	2549 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	ACACA	Q13085	2346 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	CLTCL1	P53675	1640 aa		0.24	□□□□□ -2.37
HDAC9-222	ENST00000474742	NEB	P20929	6669 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	SAMD9L	Q8IVG5	1584 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	UNC79	Q9P2D8	2635 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	LRRK2	Q5S007	2527 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	SPG11	Q96JI7	2443 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	NBAS	A2RRP1	2371 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	IGLV5-48	A0A075B6I7	105 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	MMP24-AS1	A0A0U1RRL7	71 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742		H0YAA0	97 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742		H3BNG1	76 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	TNP1	P09430	55 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	SPART-AS1	P0CW21	52 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	RPS27	P42677	84 aa	Known RBP	0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	KRTAP10-4	P60372	401 aa	Predicted RBP	0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	RPS27L	Q71UM5	84 aa	Known RBP	0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742		S4R3F8	94 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	IQGAP1	P46940	1657 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	DUOX1	Q9NRD9	1551 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	NFAT5	O94916	1531 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	ATP7A	Q04656	1500 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	FAM186A	A6NE01	2351 aa		0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	UBR5	O95071	2799 aa	Predicted RBP	0.23	□□□□□ -2.37
HDAC9-222	ENST00000474742	IGSF10	Q6WRI0	2623 aa		0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	APC	P25054	2843 aa		0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	MEGF8	Q7Z7M0	2845 aa		0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	ACAN	P16112	2415 aa		0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	GCC2	Q8IWJ2	1684 aa		0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742		M0QZ58	72 aa		0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	POLR2K	P53803	58 aa	Known RBP	0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	DEFB110	Q30KQ9	67 aa		0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	LELP1	Q5T871	98 aa		0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	LINC01590	Q5TEZ4	76 aa		0.22	□□□□□ -2.37
HDAC9-222	ENST00000474742	KIF21B	O75037	1637 aa		0.22	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms