RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 KRTAP21-3Q3LHN1 58 aa1.86□□□□□ -2.11
UBR3-208ENST00000474426 Q6ZSA8 131 aa1.85□□□□□ -2.11
UBR3-208ENST00000474426 C10orf95Q9H7T3 257 aa1.85□□□□□ -2.11
UBR3-208ENST00000474426 SPTBN2O15020 2390 aa1.85□□□□□ -2.11
UBR3-208ENST00000474426 TENM2Q9NT68 2774 aa1.85□□□□□ -2.11
UBR3-208ENST00000474426 TPRP12270 2363 aaKnown RBP1.84□□□□□ -2.11
UBR3-208ENST00000474426 LCE1DQ5T752 114 aa1.84□□□□□ -2.11
UBR3-208ENST00000474426 SPTBN1Q01082 2364 aaKnown RBP1.84□□□□□ -2.11
UBR3-208ENST00000474426 GVQW2A0A096LPI5 108 aaPredicted RBP1.84□□□□□ -2.11
UBR3-208ENST00000474426 TP53AIP1Q9HCN2 124 aa1.84□□□□□ -2.11
UBR3-208ENST00000474426 AKAP9Q99996 3911 aa1.84□□□□□ -2.12
UBR3-208ENST00000474426 PLAC4Q8WY50 150 aa1.84□□□□□ -2.12
UBR3-208ENST00000474426 KAAG1Q9UBP8 84 aa1.84□□□□□ -2.12
UBR3-208ENST00000474426 ABCA12Q86UK0 2595 aa1.83□□□□□ -2.12
UBR3-208ENST00000474426 TOMM7Q9P0U1 55 aa1.83□□□□□ -2.12
UBR3-208ENST00000474426 KRTAP19-4Q3LI73 84 aa1.83□□□□□ -2.12
UBR3-208ENST00000474426 WNK2Q9Y3S1 2297 aa1.83□□□□□ -2.12
UBR3-208ENST00000474426 OTOGLQ3ZCN5 2332 aa1.83□□□□□ -2.12
UBR3-208ENST00000474426 INE1O15225 51 aa1.82□□□□□ -2.12
UBR3-208ENST00000474426 APELAP0DMC3 54 aa1.82□□□□□ -2.12
UBR3-208ENST00000474426 KRTAP9-8Q9BYQ0 159 aa1.82□□□□□ -2.12
UBR3-208ENST00000474426 Q6ZRN7 208 aaPredicted RBP1.82□□□□□ -2.12
UBR3-208ENST00000474426 MMP24-AS1A0A0U1RRL7 71 aa1.81□□□□□ -2.12
UBR3-208ENST00000474426 PCNX1Q96RV3 2341 aa1.81□□□□□ -2.12
UBR3-208ENST00000474426 H0YGG7 62 aa1.81□□□□□ -2.12
UBR3-208ENST00000474426 BDP1A6H8Y1 2624 aa1.8□□□□□ -2.12
UBR3-208ENST00000474426 KRTAP19-1Q8IUB9 90 aa1.8□□□□□ -2.12
UBR3-208ENST00000474426 KRTAP7-1Q8IUC3 87 aa1.8□□□□□ -2.12
UBR3-208ENST00000474426 COX14Q96I36 57 aa1.8□□□□□ -2.12
UBR3-208ENST00000474426 NBEAL2Q6ZNJ1 2754 aa1.8□□□□□ -2.12
UBR3-208ENST00000474426 CEP250Q9BV73 2442 aa1.8□□□□□ -2.12
UBR3-208ENST00000474426 PIEZO1Q92508 2521 aa1.8□□□□□ -2.12
UBR3-208ENST00000474426 BAHCC1Q9P281 2608 aa1.8□□□□□ -2.12
UBR3-208ENST00000474426 LCE3BQ5TA77 95 aa1.79□□□□□ -2.12
UBR3-208ENST00000474426 CLPSL2Q6UWE3 100 aa1.79□□□□□ -2.12
UBR3-208ENST00000474426 MRPL34Q9BQ48 92 aaKnown RBP1.79□□□□□ -2.12
UBR3-208ENST00000474426 KRTAP4-5Q9BYR2 181 aa1.79□□□□□ -2.12
UBR3-208ENST00000474426 F8P00451 2351 aa1.79□□□□□ -2.12
UBR3-208ENST00000474426 C2CD3Q4AC94 2353 aa1.79□□□□□ -2.12
UBR3-208ENST00000474426 KRTAP13-3Q3SY46 172 aa1.78□□□□□ -2.12
UBR3-208ENST00000474426 PKDREJQ9NTG1 2253 aa1.78□□□□□ -2.12
UBR3-208ENST00000474426 CREBBPQ92793 2442 aa1.78□□□□□ -2.12
UBR3-208ENST00000474426 ATRQ13535 2644 aa1.78□□□□□ -2.13
UBR3-208ENST00000474426 DEFB130BP0DP73 79 aa1.77□□□□□ -2.13
UBR3-208ENST00000474426 DEFB130AP0DP74 79 aa1.77□□□□□ -2.13
UBR3-208ENST00000474426 DEFB1P60022 68 aa1.77□□□□□ -2.13
UBR3-208ENST00000474426 ACACAQ13085 2346 aa1.77□□□□□ -2.13
UBR3-208ENST00000474426 SVEP1Q4LDE5 3571 aa1.76□□□□□ -2.13
UBR3-208ENST00000474426 WNK1Q9H4A3 2382 aa1.76□□□□□ -2.13
UBR3-208ENST00000474426 KRTAP12-2P59991 146 aa1.76□□□□□ -2.13
UBR3-208ENST00000474426 UNQ6190/PRO20217Q6UXQ8 127 aa1.76□□□□□ -2.13
UBR3-208ENST00000474426 KRTAP4-11Q9BYQ6 195 aa1.76□□□□□ -2.13
UBR3-208ENST00000474426 USP24Q9UPU5 2620 aa1.75□□□□□ -2.13
UBR3-208ENST00000474426 ZNF462Q96JM2 2506 aa1.75□□□□□ -2.13
UBR3-208ENST00000474426 NCOR1O75376 2440 aa1.75□□□□□ -2.13
UBR3-208ENST00000474426 ITPR1Q14643 2758 aa1.75□□□□□ -2.13
UBR3-208ENST00000474426 DEFB105AQ8NG35 78 aa1.75□□□□□ -2.13
UBR3-208ENST00000474426 HECTD1Q9ULT8 2610 aa1.75□□□□□ -2.13
UBR3-208ENST00000474426 TENM4Q6N022 2769 aa1.75□□□□□ -2.13
UBR3-208ENST00000474426 HMCN1Q96RW7 5635 aa1.75□□□□□ -2.13
UBR3-208ENST00000474426 H1FX-AS1Q4G0G2 97 aa1.74□□□□□ -2.13
UBR3-208ENST00000474426 APCP25054 2843 aa1.74□□□□□ -2.13
UBR3-208ENST00000474426 LYNX1P0DP58 116 aa1.74□□□□□ -2.13
UBR3-208ENST00000474426 FBN2P35556 2912 aa1.74□□□□□ -2.13
UBR3-208ENST00000474426 K7EIL1 84 aa1.74□□□□□ -2.13
UBR3-208ENST00000474426 C10orf99Q6UWK7 81 aa1.73□□□□□ -2.13
UBR3-208ENST00000474426 FAM208BQ5VWN6 2430 aa1.73□□□□□ -2.13
UBR3-208ENST00000474426 NBASA2RRP1 2371 aa1.73□□□□□ -2.13
UBR3-208ENST00000474426 KLK9Q2XQG4 91 aa1.72□□□□□ -2.13
UBR3-208ENST00000474426 CSPG4Q6UVK1 2322 aa1.72□□□□□ -2.13
UBR3-208ENST00000474426 COX6B2Q6YFQ2 88 aa1.72□□□□□ -2.13
UBR3-208ENST00000474426 SPTBN4Q9H254 2564 aa1.72□□□□□ -2.13
UBR3-208ENST00000474426 MAPK1IP1LQ8NDC0 245 aa1.71□□□□□ -2.13
UBR3-208ENST00000474426 GCN1Q92616 2671 aaKnown RBP1.71□□□□□ -2.14
UBR3-208ENST00000474426 DEFB131AP59861 70 aa1.71□□□□□ -2.14
UBR3-208ENST00000474426 DEFB110Q30KQ9 67 aa1.71□□□□□ -2.14
UBR3-208ENST00000474426 SPTA1P02549 2419 aa1.71□□□□□ -2.14
UBR3-208ENST00000474426 RPL37P61927 97 aaKnown RBP1.71□□□□□ -2.14
UBR3-208ENST00000474426 UBE2DNLQ8IWF7 75 aa1.7□□□□□ -2.14
UBR3-208ENST00000474426 CHD8Q9HCK8 2581 aa1.7□□□□□ -2.14
UBR3-208ENST00000474426 KRTAP10-9P60411 292 aa1.7□□□□□ -2.14
UBR3-208ENST00000474426 Q9Y3F1 56 aa1.7□□□□□ -2.14
UBR3-208ENST00000474426 CACNA1HO95180 2353 aa1.69□□□□□ -2.14
UBR3-208ENST00000474426 SETXQ7Z333 2677 aaKnown RBP1.69□□□□□ -2.14
UBR3-208ENST00000474426 MUC6Q6W4X9 2439 aa1.69□□□□□ -2.14
UBR3-208ENST00000474426 DNAH6Q9C0G6 4158 aa1.69□□□□□ -2.14
UBR3-208ENST00000474426 KRTAP10-2P60368 255 aa1.68□□□□□ -2.14
UBR3-208ENST00000474426 LYSTQ99698 3801 aa1.68□□□□□ -2.14
UBR3-208ENST00000474426 UNC79Q9P2D8 2635 aa1.68□□□□□ -2.14
UBR3-208ENST00000474426 CEP290O15078 2479 aa1.68□□□□□ -2.14
UBR3-208ENST00000474426 UTP20O75691 2785 aaKnown RBP1.68□□□□□ -2.14
UBR3-208ENST00000474426 J3QKU1 62 aa1.68□□□□□ -2.14
UBR3-208ENST00000474426 KRTAP13-2Q52LG2 175 aa1.68□□□□□ -2.14
UBR3-208ENST00000474426 DNHD1Q96M86 4753 aa1.68□□□□□ -2.14
UBR3-208ENST00000474426 IGKV2-30P06310 120 aa1.67□□□□□ -2.14
UBR3-208ENST00000474426 DEFB109BQ30KR1 87 aa1.67□□□□□ -2.14
UBR3-208ENST00000474426 FBN3Q75N90 2809 aa1.67□□□□□ -2.14
UBR3-208ENST00000474426 TTC28Q96AY4 2481 aa1.67□□□□□ -2.14
UBR3-208ENST00000474426 SPRR5A0A1B0GTR4 108 aa1.66□□□□□ -2.14
UBR3-208ENST00000474426 SPINK13Q1W4C9 94 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms