RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 H0YGX0 51 aa8.54□□□□□ -1.04
LIMS1-212ENST00000474038 HRCT1Q6UXD1 115 aa8.54□□□□□ -1.04
LIMS1-212ENST00000474038 FP248Q71RG6 208 aaPredicted RBP8.54□□□□□ -1.04
LIMS1-212ENST00000474038 A0A0G2JQZ4 141 aa8.52□□□□□ -1.05
LIMS1-212ENST00000474038 K7ERJ3 54 aa8.52□□□□□ -1.05
LIMS1-212ENST00000474038 TPRXLQ17RH7 258 aa8.52□□□□□ -1.05
LIMS1-212ENST00000474038 FAM218AQ96MZ4 157 aa8.52□□□□□ -1.05
LIMS1-212ENST00000474038 SMIM6P0DI80 62 aa8.51□□□□□ -1.05
LIMS1-212ENST00000474038 CD164Q04900 197 aa8.51□□□□□ -1.05
LIMS1-212ENST00000474038 F8WEM9 126 aa8.5□□□□□ -1.05
LIMS1-212ENST00000474038 TRIAP1O43715 76 aa8.5□□□□□ -1.05
LIMS1-212ENST00000474038 MUC17Q685J3 4493 aa8.5□□□□□ -1.05
LIMS1-212ENST00000474038 PPDPFLQ8WWR9 84 aa8.49□□□□□ -1.05
LIMS1-212ENST00000474038 LIMD2Q9BT23 127 aa8.49□□□□□ -1.05
LIMS1-212ENST00000474038 CDIP1Q9H305 208 aa8.49□□□□□ -1.05
LIMS1-212ENST00000474038 SNCGO76070 127 aa8.48□□□□□ -1.05
LIMS1-212ENST00000474038 IGLV8-61A0A075B6I0 122 aa8.47□□□□□ -1.05
LIMS1-212ENST00000474038 A0A1B0GX51 115 aa8.46□□□□□ -1.06
LIMS1-212ENST00000474038 KRTAP13-3Q3SY46 172 aa8.46□□□□□ -1.06
LIMS1-212ENST00000474038 OCIAD2Q56VL3 154 aa8.46□□□□□ -1.06
LIMS1-212ENST00000474038 SNHG12Q9BXW3 62 aa8.46□□□□□ -1.06
LIMS1-212ENST00000474038 LOC105371267A0A1B0GV96 52 aa8.45□□□□□ -1.06
LIMS1-212ENST00000474038 PSMB2P49721 201 aa8.45□□□□□ -1.06
LIMS1-212ENST00000474038 CLEC2BQ92478 149 aa8.45□□□□□ -1.06
LIMS1-212ENST00000474038 Q6JHZ5 121 aa8.44□□□□□ -1.06
LIMS1-212ENST00000474038 Q5XG85 94 aa8.43□□□□□ -1.06
LIMS1-212ENST00000474038 IGFL1Q6UW32 110 aa8.43□□□□□ -1.06
LIMS1-212ENST00000474038 COX6CP09669 75 aa8.41□□□□□ -1.06
LIMS1-212ENST00000474038 A0A0U1RQV1 116 aa8.4□□□□□ -1.06
LIMS1-212ENST00000474038 H3BUT2 72 aa8.4□□□□□ -1.06
LIMS1-212ENST00000474038 NDUFV3P56181 108 aaKnown RBP8.4□□□□□ -1.06
LIMS1-212ENST00000474038 M0R143 59 aa8.39□□□□□ -1.07
LIMS1-212ENST00000474038 GHRHP01286 108 aa8.38□□□□□ -1.07
LIMS1-212ENST00000474038 FAT4Q6V0I7 4981 aa8.37□□□□□ -1.07
LIMS1-212ENST00000474038 FABP2P12104 132 aa8.37□□□□□ -1.07
LIMS1-212ENST00000474038 C1orf195Q5TG92 126 aa8.37□□□□□ -1.07
LIMS1-212ENST00000474038 TRBV7-7A0A0K0K1E9 115 aa8.36□□□□□ -1.07
LIMS1-212ENST00000474038 TSTD3H0UI37 97 aa8.36□□□□□ -1.07
LIMS1-212ENST00000474038 TCL1BO95988 128 aa8.36□□□□□ -1.07
LIMS1-212ENST00000474038 DNAL4O96015 105 aa8.36□□□□□ -1.07
LIMS1-212ENST00000474038 ORMDL1Q9P0S3 153 aa8.35□□□□□ -1.07
LIMS1-212ENST00000474038 SCGB1C2P0DMR2 95 aa8.34□□□□□ -1.07
LIMS1-212ENST00000474038 H3BMG7 143 aa8.33□□□□□ -1.08
LIMS1-212ENST00000474038 H3BQ85 93 aa8.32□□□□□ -1.08
LIMS1-212ENST00000474038 LST1O00453 97 aa8.32□□□□□ -1.08
LIMS1-212ENST00000474038 TRACP01848 142 aa8.32□□□□□ -1.08
LIMS1-212ENST00000474038 ASB16-AS1Q495Z4 193 aa8.32□□□□□ -1.08
LIMS1-212ENST00000474038 XP32Q5T750 250 aa8.3□□□□□ -1.08
LIMS1-212ENST00000474038 Q6Q795 121 aa8.3□□□□□ -1.08
LIMS1-212ENST00000474038 C9orf92A6NGG3 77 aa8.29□□□□□ -1.08
LIMS1-212ENST00000474038 TMEM256-PLSCR3K7ERE1 68 aa8.29□□□□□ -1.08
LIMS1-212ENST00000474038 LCE2AQ5TA79 106 aaPredicted RBP8.29□□□□□ -1.08
LIMS1-212ENST00000474038 TEN1Q86WV5 123 aa8.29□□□□□ -1.08
LIMS1-212ENST00000474038 NAA38Q9BRA0 125 aaKnown RBP8.29□□□□□ -1.08
LIMS1-212ENST00000474038 A0A1B0GV72 72 aa8.26□□□□□ -1.09
LIMS1-212ENST00000474038 UBE2V1Q13404 147 aa8.26□□□□□ -1.09
LIMS1-212ENST00000474038 BATFQ16520 125 aa8.26□□□□□ -1.09
LIMS1-212ENST00000474038 A0A1W2PNM2 257 aa8.25□□□□□ -1.09
LIMS1-212ENST00000474038 ANKRD29Q8N6D5 301 aa8.25□□□□□ -1.09
LIMS1-212ENST00000474038 SEC61BP60468 96 aaKnown RBP8.24□□□□□ -1.09
LIMS1-212ENST00000474038 KRTAP4-1Q9BYQ7 146 aa8.24□□□□□ -1.09
LIMS1-212ENST00000474038 SS18L2Q9UHA2 77 aa8.24□□□□□ -1.09
LIMS1-212ENST00000474038 A0A087WSZ3 146 aa8.23□□□□□ -1.09
LIMS1-212ENST00000474038 BAALC-AS2P0C853 105 aa8.22□□□□□ -1.09
LIMS1-212ENST00000474038 ATXN8Q156A1 80 aa8.22□□□□□ -1.09
LIMS1-212ENST00000474038 TRBV7-4A0A0J9YYF1 115 aa8.19□□□□□ -1.1
LIMS1-212ENST00000474038 CCKP06307 115 aa8.17□□□□□ -1.1
LIMS1-212ENST00000474038 RBM3P98179 157 aaKnown RBP8.17□□□□□ -1.1
LIMS1-212ENST00000474038 LYRM7Q5U5X0 104 aa8.17□□□□□ -1.1
LIMS1-212ENST00000474038 Q96NJ1 140 aa8.17□□□□□ -1.1
LIMS1-212ENST00000474038 C9orf118A6NHY6 69 aa8.16□□□□□ -1.1
LIMS1-212ENST00000474038 TAX1BP3O14907 124 aa8.16□□□□□ -1.1
LIMS1-212ENST00000474038 TRBV20-1A0A075B6N2 111 aa8.15□□□□□ -1.1
LIMS1-212ENST00000474038 PCOTHQ58A44 107 aa8.14□□□□□ -1.11
LIMS1-212ENST00000474038 DSCR8Q96T75 97 aa8.14□□□□□ -1.11
LIMS1-212ENST00000474038 KRTAP9-2Q9BYQ4 174 aa8.14□□□□□ -1.11
LIMS1-212ENST00000474038 RPL37P61927 97 aaKnown RBP8.12□□□□□ -1.11
LIMS1-212ENST00000474038 OBSCN-AS1Q96MR7 158 aa8.12□□□□□ -1.11
LIMS1-212ENST00000474038 VPS25Q9BRG1 176 aa8.12□□□□□ -1.11
LIMS1-212ENST00000474038 A0A1W2PPM0 123 aa8.11□□□□□ -1.11
LIMS1-212ENST00000474038 C9JAW5 83 aa8.11□□□□□ -1.11
LIMS1-212ENST00000474038 JMJD7-PLA2G4BH0Y9G9 81 aa8.09□□□□□ -1.11
LIMS1-212ENST00000474038 SIGMAR1Q99720 223 aa8.08□□□□□ -1.12
LIMS1-212ENST00000474038 LINC00472Q9H8W2 130 aa8.08□□□□□ -1.12
LIMS1-212ENST00000474038 IGKV4-1P06312 121 aa8.07□□□□□ -1.12
LIMS1-212ENST00000474038 DEFB116Q30KQ4 102 aa8.06□□□□□ -1.12
LIMS1-212ENST00000474038 Q6ZQT0 140 aa8.06□□□□□ -1.12
LIMS1-212ENST00000474038 LOC110117498A0A087WWA1 95 aa8.05□□□□□ -1.12
LIMS1-212ENST00000474038 Q75L30 129 aa8.04□□□□□ -1.12
LIMS1-212ENST00000474038 H3BT86 120 aa8.03□□□□□ -1.12
LIMS1-212ENST00000474038 DSCR10P59022 87 aa8.03□□□□□ -1.12
LIMS1-212ENST00000474038 C21orf62-AS1Q17RA5 79 aa8.03□□□□□ -1.12
LIMS1-212ENST00000474038 COL5A1-AS1Q5SY13 56 aa8.03□□□□□ -1.12
LIMS1-212ENST00000474038 MTURNQ8N3F0 131 aa8.03□□□□□ -1.12
LIMS1-212ENST00000474038 C14orf132Q9NPU4 83 aa8.03□□□□□ -1.12
LIMS1-212ENST00000474038 PDE6GP18545 87 aa8.02□□□□□ -1.13
LIMS1-212ENST00000474038 LCE2CQ5TA81 110 aa8.02□□□□□ -1.13
LIMS1-212ENST00000474038 SPCS1Q9Y6A9 102 aa8.01□□□□□ -1.13
LIMS1-212ENST00000474038 KRTAP19-2Q3LHN2 52 aa8□□□□□ -1.13
LIMS1-212ENST00000474038 C20orf166-AS1Q96NR2 134 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms