RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 BVES-AS1Q5T3Y7 98 aa10.62□□□□□ -0.71
PTCD3-210ENST00000473829 CDIP1Q9H305 208 aa10.62□□□□□ -0.71
PTCD3-210ENST00000473829 PRO1933Q9H354 126 aa10.62□□□□□ -0.71
PTCD3-210ENST00000473829 KRTAP13-3Q3SY46 172 aa10.61□□□□□ -0.71
PTCD3-210ENST00000473829 MUC2Q02817 5179 aa10.61□□□□□ -0.71
PTCD3-210ENST00000473829 MUC17Q685J3 4493 aa10.58□□□□□ -0.72
PTCD3-210ENST00000473829 TMEM238LA0A1B0GVL6 79 aa10.57□□□□□ -0.72
PTCD3-210ENST00000473829 A6NJY4 79 aa10.57□□□□□ -0.72
PTCD3-210ENST00000473829 CD164Q04900 197 aa10.57□□□□□ -0.72
PTCD3-210ENST00000473829 HSD52Q0P140 79 aa10.57□□□□□ -0.72
PTCD3-210ENST00000473829 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.57□□□□□ -0.72
PTCD3-210ENST00000473829 FAM218AQ96MZ4 157 aa10.56□□□□□ -0.72
PTCD3-210ENST00000473829 LIMD2Q9BT23 127 aa10.56□□□□□ -0.72
PTCD3-210ENST00000473829 PRO1854Q9UHT4 67 aa10.56□□□□□ -0.72
PTCD3-210ENST00000473829 UQCR10Q9UDW1 63 aa10.54□□□□□ -0.72
PTCD3-210ENST00000473829 F8WEM9 126 aa10.52□□□□□ -0.73
PTCD3-210ENST00000473829 K7ERJ3 54 aa10.52□□□□□ -0.73
PTCD3-210ENST00000473829 H0YGX0 51 aa10.51□□□□□ -0.73
PTCD3-210ENST00000473829 IGLV8-61A0A075B6I0 122 aa10.5□□□□□ -0.73
PTCD3-210ENST00000473829 TRIAP1O43715 76 aa10.5□□□□□ -0.73
PTCD3-210ENST00000473829 PPDPFLQ8WWR9 84 aa10.49□□□□□ -0.73
PTCD3-210ENST00000473829 Q5XG85 94 aa10.48□□□□□ -0.73
PTCD3-210ENST00000473829 OCIAD2Q56VL3 154 aa10.47□□□□□ -0.73
PTCD3-210ENST00000473829 IGFL1Q6UW32 110 aa10.47□□□□□ -0.73
PTCD3-210ENST00000473829 Q6JHZ5 121 aa10.45□□□□□ -0.74
PTCD3-210ENST00000473829 CLEC2BQ92478 149 aa10.45□□□□□ -0.74
PTCD3-210ENST00000473829 SNHG12Q9BXW3 62 aa10.45□□□□□ -0.74
PTCD3-210ENST00000473829 H3BUT2 72 aa10.44□□□□□ -0.74
PTCD3-210ENST00000473829 C1orf195Q5TG92 126 aa10.44□□□□□ -0.74
PTCD3-210ENST00000473829 A0A1B0GX51 115 aa10.42□□□□□ -0.74
PTCD3-210ENST00000473829 SNCGO76070 127 aa10.42□□□□□ -0.74
PTCD3-210ENST00000473829 XP32Q5T750 250 aa10.42□□□□□ -0.74
PTCD3-210ENST00000473829 PSMB2P49721 201 aa10.4□□□□□ -0.74
PTCD3-210ENST00000473829 TRBV7-7A0A0K0K1E9 115 aa10.39□□□□□ -0.75
PTCD3-210ENST00000473829 ASB16-AS1Q495Z4 193 aa10.39□□□□□ -0.75
PTCD3-210ENST00000473829 C9orf92A6NGG3 77 aa10.38□□□□□ -0.75
PTCD3-210ENST00000473829 SMIM6P0DI80 62 aa10.38□□□□□ -0.75
PTCD3-210ENST00000473829 NDUFV3P56181 108 aaKnown RBP10.38□□□□□ -0.75
PTCD3-210ENST00000473829 TCL1BO95988 128 aa10.37□□□□□ -0.75
PTCD3-210ENST00000473829 FAT4Q6V0I7 4981 aa10.34□□□□□ -0.75
PTCD3-210ENST00000473829 FABP2P12104 132 aa10.34□□□□□ -0.75
PTCD3-210ENST00000473829 COX6CP09669 75 aa10.33□□□□□ -0.76
PTCD3-210ENST00000473829 KRTAP4-1Q9BYQ7 146 aa10.33□□□□□ -0.76
PTCD3-210ENST00000473829 SEC61BP60468 96 aaKnown RBP10.32□□□□□ -0.76
PTCD3-210ENST00000473829 H3BMG7 143 aa10.31□□□□□ -0.76
PTCD3-210ENST00000473829 DNAL4O96015 105 aa10.31□□□□□ -0.76
PTCD3-210ENST00000473829 ORMDL1Q9P0S3 153 aa10.3□□□□□ -0.76
PTCD3-210ENST00000473829 LOC105371267A0A1B0GV96 52 aa10.29□□□□□ -0.76
PTCD3-210ENST00000473829 GHRHP01286 108 aa10.29□□□□□ -0.76
PTCD3-210ENST00000473829 Q6Q795 121 aa10.29□□□□□ -0.76
PTCD3-210ENST00000473829 A0A0U1RQV1 116 aa10.27□□□□□ -0.77
PTCD3-210ENST00000473829 A0A1B0GV72 72 aa10.26□□□□□ -0.77
PTCD3-210ENST00000473829 M0R143 59 aa10.26□□□□□ -0.77
PTCD3-210ENST00000473829 LST1O00453 97 aa10.26□□□□□ -0.77
PTCD3-210ENST00000473829 TEN1Q86WV5 123 aa10.26□□□□□ -0.77
PTCD3-210ENST00000473829 A0A1W2PNM2 257 aa10.24□□□□□ -0.77
PTCD3-210ENST00000473829 TRACP01848 142 aa10.24□□□□□ -0.77
PTCD3-210ENST00000473829 SCGB1C2P0DMR2 95 aa10.24□□□□□ -0.77
PTCD3-210ENST00000473829 NAA38Q9BRA0 125 aaKnown RBP10.23□□□□□ -0.77
PTCD3-210ENST00000473829 A0A087WSZ3 146 aa10.22□□□□□ -0.77
PTCD3-210ENST00000473829 H3BQ85 93 aa10.22□□□□□ -0.77
PTCD3-210ENST00000473829 TMEM256-PLSCR3K7ERE1 68 aa10.22□□□□□ -0.77
PTCD3-210ENST00000473829 PCOTHQ58A44 107 aa10.21□□□□□ -0.77
PTCD3-210ENST00000473829 TSTD3H0UI37 97 aa10.2□□□□□ -0.78
PTCD3-210ENST00000473829 SS18L2Q9UHA2 77 aa10.2□□□□□ -0.78
PTCD3-210ENST00000473829 LCE2AQ5TA79 106 aaPredicted RBP10.19□□□□□ -0.78
PTCD3-210ENST00000473829 UBE2V1Q13404 147 aa10.18□□□□□ -0.78
PTCD3-210ENST00000473829 ANKRD29Q8N6D5 301 aa10.18□□□□□ -0.78
PTCD3-210ENST00000473829 Q96NJ1 140 aa10.17□□□□□ -0.78
PTCD3-210ENST00000473829 RPL37P61927 97 aaKnown RBP10.16□□□□□ -0.78
PTCD3-210ENST00000473829 TRBV7-4A0A0J9YYF1 115 aa10.13□□□□□ -0.79
PTCD3-210ENST00000473829 BATFQ16520 125 aa10.13□□□□□ -0.79
PTCD3-210ENST00000473829 OBSCN-AS1Q96MR7 158 aa10.13□□□□□ -0.79
PTCD3-210ENST00000473829 CCKP06307 115 aa10.11□□□□□ -0.79
PTCD3-210ENST00000473829 BAALC-AS2P0C853 105 aa10.11□□□□□ -0.79
PTCD3-210ENST00000473829 ATXN8Q156A1 80 aa10.1□□□□□ -0.79
PTCD3-210ENST00000473829 LCE2CQ5TA81 110 aa10.08□□□□□ -0.8
PTCD3-210ENST00000473829 RBM3P98179 157 aaKnown RBP10.07□□□□□ -0.8
PTCD3-210ENST00000473829 DSCR8Q96T75 97 aa10.04□□□□□ -0.8
PTCD3-210ENST00000473829 SIGMAR1Q99720 223 aa10.04□□□□□ -0.8
PTCD3-210ENST00000473829 VPS25Q9BRG1 176 aa10.04□□□□□ -0.8
PTCD3-210ENST00000473829 KRTAP19-2Q3LHN2 52 aa10.03□□□□□ -0.8
PTCD3-210ENST00000473829 Q75L30 129 aa10.03□□□□□ -0.8
PTCD3-210ENST00000473829 LINC00472Q9H8W2 130 aa10.02□□□□□ -0.81
PTCD3-210ENST00000473829 TAX1BP3O14907 124 aa10.01□□□□□ -0.81
PTCD3-210ENST00000473829 IGKV4-1P06312 121 aa10.01□□□□□ -0.81
PTCD3-210ENST00000473829 DEFB116Q30KQ4 102 aa10.01□□□□□ -0.81
PTCD3-210ENST00000473829 LYRM7Q5U5X0 104 aa10.01□□□□□ -0.81
PTCD3-210ENST00000473829 DSCR10P59022 87 aa10□□□□□ -0.81
PTCD3-210ENST00000473829 C9orf118A6NHY6 69 aa9.99□□□□□ -0.81
PTCD3-210ENST00000473829 C9JAW5 83 aa9.99□□□□□ -0.81
PTCD3-210ENST00000473829 TRBV20-1A0A075B6N2 111 aa9.98□□□□□ -0.81
PTCD3-210ENST00000473829 C20orf166-AS1Q96NR2 134 aa9.97□□□□□ -0.81
PTCD3-210ENST00000473829 Q6ZQT0 140 aa9.96□□□□□ -0.82
PTCD3-210ENST00000473829 A8MUU9 505 aa9.95□□□□□ -0.82
PTCD3-210ENST00000473829 JMJD7-PLA2G4BH0Y9G9 81 aa9.95□□□□□ -0.82
PTCD3-210ENST00000473829 A0A1W2PPM0 123 aa9.94□□□□□ -0.82
PTCD3-210ENST00000473829 NOTCH2NLQ7Z3S9 236 aa9.94□□□□□ -0.82
PTCD3-210ENST00000473829 LOC110117498A0A087WWA1 95 aa9.93□□□□□ -0.82
PTCD3-210ENST00000473829 ATP11AUNQ6ZP68 121 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms